ID: uc009wzk.2_intron_0_0_chr1_200613646_r.3p
GENE: (7)
chr1:200613596-200613845-


(1)
AGO2.ip 		(2)
B-CELL 		(3)
BRAIN 		(3)
BREAST 		(10)
CELL-LINE 		(1)
CERVIX 		(4)
LIVER 		(5)
OTHER 		(1)
SKIN 		(1)
XRN.ip

Sense strand
TTGCCACGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCTGCCTCAGCTCCCAAAGTGCTGGGGTTACAGGCGTGAGCCACTGCACCCAGCCAGTAATGCTACTTTAAGTAATATTATTCATTTTCTTTCAAAAGACACTAAGATTTTACATGGACATCTTGAAAATGTTCTTTGCATTTTATTTCAGATTGGAAGAGTAGGAAGATTAGGTCAAAATGGAACAGCGATTACTTTCAT
.....................................................................((((((((....(((....)))...)).)))))).(((((((.(((.....))).))))))).....((((....))))......................................................................................................
............................................................61...................................................................................................162......................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR189786SRR189784SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR343335SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM532929(GSM532929)
G702N. (cervix)		SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
.........................................................................................................................................CTTTCAAAAGACACTAAATTG............................................................................................2115.000.00--8.00---7.00----------------------
.................................................................AAGTGCTGGGGTTACAGGCGAGCC.................................................................................................................................................................247.000.005.002.00---------------------------
.....ACGTTGGCCAGGCTGGTCAATC...............................................................................................................................................................................................................................227.000.00-----7.00-----------------------
..................................................................AGTGCTGGGGTTACAGGCGAGCC.................................................................................................................................................................235.000.004.001.00---------------------------
.................................................................AAGTGCTGGGGTTACAGGCGAGC..................................................................................................................................................................233.000.002.001.00---------------------------
................................................................................................................................................................................................................AGTAGGAAGATTAGGTCAAAATGG..................2413.003.00---------3.00-------------------
...........................................................................................................................................TTCAAAAGACACTAAATTG............................................................................................192.000.00--2.00--------------------------
..GCCACGTTGGCCAGGCTGCAC...................................................................................................................................................................................................................................212.000.00-2.00---------------------------
........................................................................................................................................................................................................ATTGGAAGAGTAGGAAG.................................1712.002.00--------2.00--------------------
..................................................................AGTGCTGGGGTTACAGGCGAGC..................................................................................................................................................................222.000.00-2.00---------------------------
....................................................................TGCTGGGGTTACAGGCGAGCC.................................................................................................................................................................212.000.001.001.00---------------------------
..................................................................................................................................................................................TGTTCTTTGCATTTTTTGT.....................................................191.000.001.00----------------------------
..............................................................................................................................................................................................................................GTCAAAATGGAACAGCG...........1711.001.00--------1.00--------------------
........................................................................GGGGTTACAGGCGTGAGCGACT............................................................................................................................................................221.000.00-------1.00---------------------
......................................................................CTGGGGTTACAGGCGTGCA.................................................................................................................................................................191.000.00--------------------1.00--------
.......................................................................................................................................................................................................GATTGGAAGAGTAGGAAGATTAGGTCA........................2711.001.00-------1.00---------------------
....................................................................................................................................................................................................................GGAAGATTAGGTCAAAATG...................1911.001.00-------1.00---------------------
.....................................................................GCTGGGGTTACAGGCGTGGCCA...............................................................................................................................................................221.000.00---------------------------1.00-
.........................................................................................................................................CTTTCAAAAGACACTAAATT.............................................................................................201.000.00--1.00--------------------------
......................................................................................................................................................................................................................AAGATTAGGTCAAAATGGAACAGCG...........2511.001.00----------------------1.00------
.TGCCACGTTGGCCAGGCTGGTCGGA................................................................................................................................................................................................................................251.000.00-1.00---------------------------
..................................................................AGTGCTGGGGTTACAGGCGCGT..................................................................................................................................................................221.000.001.00----------------------------
...............................................................................................................................................................................................................GAGTAGGAAGATTAGGTCAAA......................2111.001.00-------1.00---------------------
..................................................................AGTGCTGGGGTTACAGGCGAGCG.................................................................................................................................................................231.000.00-1.00---------------------------
.....ACGTTGGCCAGGCTGGGCTA.................................................................................................................................................................................................................................201.000.00-1.00---------------------------
................................................................AAAGTGCTGGGGTTACAGGCGAGCC.................................................................................................................................................................251.000.001.00----------------------------
.........................................................AGCTCCCAAAGTGCTGGCATC............................................................................................................................................................................211.000.00-1.00---------------------------
.TGCCACGTTGGCCAGGCTGGGCC..................................................................................................................................................................................................................................231.000.00-1.00---------------------------
......................................................................................................................................................................................................................AAGATTAGGTCAAAATGGAACA..............2211.001.00-------------------1.00---------
......................................................................................................................................................................................................AGATTGGAAGAGTAGGAAGATTAGGTC.........................2711.001.00--------------1.00--------------
................................................................................AGGCGTGAGCCACTGCACCCAGGG..................................................................................................................................................241.000.00-1.00---------------------------
...CCACGTTGGCCAGGCTGGTCTCTGG..............................................................................................................................................................................................................................251.000.00-----------------------1.00-----
.....ACGTTGGCCAGGCTGGTCTCAAACTCCGACC......................................................................................................................................................................................................................311.000.001.00----------------------------
.....................................................................................................................................................................................................CAGATTGGAAGAGTAGGAAGATTAG............................2511.001.00--------------------------1.00--
..........................................................................................................................................................................................................TGGAAGAGTAGGAAGATTAGG...........................2111.001.00--------1.00--------------------
...........................ACTCCTGACCTCAGGTGATCCACCTGCCGGG................................................................................................................................................................................................311.000.001.00----------------------------
.................................................................AAGTGCTGGGGTTACAGGCGATCC.................................................................................................................................................................241.000.001.00----------------------------
..................................................................AGTGCTGGGGTTACAGGCGAGTC.................................................................................................................................................................231.000.001.00----------------------------
.................................................................AAGTGCTGGGGTTACAGGCGAGGC.................................................................................................................................................................241.000.00-1.00---------------------------
..................................................................AGTGCTGGGGTTACAGGCGGGCC.................................................................................................................................................................231.000.001.00----------------------------
.TGCCACGTTGGCCAGGCTGGTCGTA................................................................................................................................................................................................................................251.000.00-1.00---------------------------
......................................................................CTGGGGTTACAGGCGAAC..................................................................................................................................................................181.000.00-1.00---------------------------
..................................................................AGTGCTGGGGTTACAGGCGAGCT.................................................................................................................................................................231.000.001.00----------------------------
.TGCCACGTTGGCCAGGCTGTCTC..................................................................................................................................................................................................................................231.000.001.00----------------------------
..........................................................................................................................................................................................................TGGAAGAGTAGGAAGATTAGGTCAAAA.....................2711.001.00-------1.00---------------------
.......................................................................................................................................................................................................GATTGGAAGAGTAGGAAGATTAGGTC.........................2611.001.00-------1.00---------------------
.TGCCACGTTGGCCAGGCTGGAACT.................................................................................................................................................................................................................................241.000.00-1.00---------------------------
..................................................................AGTGCTGGGGTTACAGGCGAACC.................................................................................................................................................................231.000.001.00----------------------------
...........................................................................................................................ATATTATTCATTTTCAAT.............................................................................................................181.000.00----------1.00------------------
............................................................................................................................................................................................................................AGGTCAAAATGGAACAGC............1820.500.50-------------0.50---------------
.............................................TCCACCTGCCTCAGCTCCCAAAGTGCTGG................................................................................................................................................................................2970.140.140.14----------------------------

Antisense strand
TTGCCACGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCTGCCTCAGCTCCCAAAGTGCTGGGGTTACAGGCGTGAGCCACTGCACCCAGCCAGTAATGCTACTTTAAGTAATATTATTCATTTTCTTTCAAAAGACACTAAGATTTTACATGGACATCTTGAAAATGTTCTTTGCATTTTATTTCAGATTGGAAGAGTAGGAAGATTAGGTCAAAATGGAACAGCGATTACTTTCAT
.....................................................................((((((((....(((....)))...)).)))))).(((((((.(((.....))).))))))).....((((....))))......................................................................................................
............................................................61...................................................................................................162......................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR189786SRR189784SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR343335SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM532929(GSM532929)
G702N. (cervix)		SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
......CGTTGGCCAGGCTGGTCTGCG............................................................................................................................................................................................................................... 2138.000.0032.005.00-1.00-------------------------
......CGTTGGCCAGGCTGGTCTGCA............................................................................................................................................................................................................................... 2130.000.0025.004.00-1.00-------------------------
......CGTTGGCCAGGCTGGTCTCAGCG............................................................................................................................................................................................................................. 2316.000.0011.005.00---------------------------
......CGTTGGCCAGGCTGGTCTCAAGC............................................................................................................................................................................................................................. 2315.000.0013.002.00---------------------------
......CGTTGGCCAGGCTGGTCTCAAGCG............................................................................................................................................................................................................................ 2414.000.005.008.00-1.00-------------------------
......CGTTGGCCAGGCTGGTCTGC................................................................................................................................................................................................................................ 2010.000.0010.00----------------------------
......CGTTGGCCAGGCTGGTCTGCGA.............................................................................................................................................................................................................................. 228.000.008.00----------------------------
......CGTTGGCCAGGCTGGTCTCAAAGCG........................................................................................................................................................................................................................... 258.000.003.005.00---------------------------
......CGTTGGCCAGGCTGGTCTCAGC.............................................................................................................................................................................................................................. 227.000.007.00----------------------------
......CGTTGGCCAGGCTGGTCTCAAGCA............................................................................................................................................................................................................................ 246.000.00-6.00---------------------------
......CGTTGGCCAGGCTGGTCTCGCG.............................................................................................................................................................................................................................. 224.000.003.001.00---------------------------
......CGTTGGCCAGGCTGGTCTCAAACTGCA......................................................................................................................................................................................................................... 274.000.004.00----------------------------
......CGTTGGCCAGGCTGGTCTCAGCA............................................................................................................................................................................................................................. 234.000.001.003.00---------------------------
......CGTTGGCCAGGCTGGTCTCAAAGC............................................................................................................................................................................................................................ 243.000.003.00----------------------------
......CGTTGGCCAGGCTGGTCTCAAACTGCG......................................................................................................................................................................................................................... 272.000.002.00----------------------------
........................................................................................................................................................................................................................................AACAGCGATTACTTTCTTTG 202.000.00----1.00-----1.00------------------
......CGTTGGCCAGGCTGGTGCG................................................................................................................................................................................................................................. 192.000.002.00----------------------------
.................................................................................GGCGTGAGCCACTGCACCCAGCCAGTCG............................................................................................................................................. 282.000.002.00----------------------------
.....................................................................GCTGGGGTTACAGGCGTGAGCCACG............................................................................................................................................................ 252.000.002.00----------------------------
.............................................................................TACAGGCGTGAGCCACTGCACCCC..................................................................................................................................................... 242.000.002.00----------------------------
...............GGCTGGTCTCAAACTCCTGACCTGTCC................................................................................................................................................................................................................ 272.000.001.00-----------1.00----------------
................................................................AAAGTGCTGGGGTTACAGGCGTGAGAAA.............................................................................................................................................................. 282.000.00----2.00------------------------
......CGTTGGCCAGGCTGGTCTCAAACTGCAA........................................................................................................................................................................................................................ 282.000.00-2.00---------------------------
..............................CCTGACCTCAGGTGATCCACCTCTAT.................................................................................................................................................................................................. 262.000.00-----------2.00-----------------
......CGTTGGCCAGGCTGGTCTGCAA.............................................................................................................................................................................................................................. 222.000.002.00----------------------------
......CGTTGGCCAGGCTGGTCTCAAAGCGA.......................................................................................................................................................................................................................... 262.000.001.001.00---------------------------
......CGTTGGCCAGGCTGGTCTCAGCC............................................................................................................................................................................................................................. 232.000.00-2.00---------------------------
........................................................................................................................................................................................................................................AACAGCGATTACTTTCATT 192.000.00----2.00------------------------
...............GGCTGGTCTCAAACTCCTGACCTGCCC................................................................................................................................................................................................................ 272.000.002.00----------------------------
...........................................................CTCCCAAAGTGCTGGGGTTACAGGCGTACAG................................................................................................................................................................ 311.000.001.00----------------------------
............................CTCCTGACCTCAGGTGATCCACCTGCCTCACC.............................................................................................................................................................................................. 321.000.001.00----------------------------
....................GTCTCAAACTCCTGACCTCAGGACGA............................................................................................................................................................................................................ 261.000.00----------------1.00------------
......CGTTGGCCAGGCTGGTCTCAAGGA............................................................................................................................................................................................................................ 241.000.00-1.00---------------------------
......CGTTGGCCAGGCTGGTCTCAAAGTGG.......................................................................................................................................................................................................................... 261.000.00-1.00---------------------------
.......................................................................TGGGGTTACAGGCGTGAGCTCCC............................................................................................................................................................ 231.000.00---1.00-------------------------
......CGTTGGCCAGGCTGGTCTCAAAGCT........................................................................................................................................................................................................................... 251.000.00-1.00---------------------------
..............................................CCACCTGCCTCAGCTCCCAGTC...................................................................................................................................................................................... 221.000.00-1.00---------------------------
.................................................................AAGTGCTGGGGTTACAGGCGTGAGCTTG............................................................................................................................................................. 281.000.001.00----------------------------
...................................................................................CGTGAGCCACTGCACCCAGCCAGG............................................................................................................................................... 241.000.001.00----------------------------
.................................................................AAGTGCTGGGGTTACAGGCGTAA.................................................................................................................................................................. 231.000.00------------------1.00----------
......CGTTGGCCAGGCTGGTCTGCGG.............................................................................................................................................................................................................................. 221.000.001.00----------------------------
.................................................................AAGTGCTGGGGTTACAGGCGTGAGCTG.............................................................................................................................................................. 271.000.00------------1.00----------------
......CGTTGGCCAGGCTGGTCTCAGGA............................................................................................................................................................................................................................. 231.000.001.00----------------------------
.............................................TCCACCTGCCTCAGCTCCCAAG....................................................................................................................................................................................... 221.000.00-1.00---------------------------
...............GGCTGGTCTCAAACTCCTGACCTCGGTC............................................................................................................................................................................................................... 281.000.001.00----------------------------
...............GGCTGGTCTCAAACTCCTGACCTCAGTCC.............................................................................................................................................................................................................. 291.000.001.00----------------------------
......CGTTGGCCAGGCTGGTCTCAGCAA............................................................................................................................................................................................................................ 241.000.00-1.00---------------------------
......CGTTGGCCAGGCTGGTCTCAAACTACC......................................................................................................................................................................................................................... 271.000.001.00----------------------------
..............................CCTGACCTCAGGTGATCCACCTGCCTCTAA.............................................................................................................................................................................................. 301.000.001.00----------------------------
...................................................................GTGCTGGGGTTACAGGCGTGA.................................................................................................................................................................. 211.000.00---------------------1.00-------
......CGTTGGCCAGGCTGGTCTGCC............................................................................................................................................................................................................................... 211.000.001.00----------------------------
......CGTTGGCCAGGCTGGTCTCAAACTGC.......................................................................................................................................................................................................................... 261.000.00-1.00---------------------------
.........................................................................GGGTTACAGGCGTGAGCCACTGCATAAC..................................................................................................................................................... 281.000.00-1.00---------------------------
..................................................CTGCCTCAGCTCCCAAAGTGCTGGGGTTTAGG........................................................................................................................................................................ 321.000.00-1.00---------------------------
......CGTTGGCCAGGCTGGTCTCAAAGCC........................................................................................................................................................................................................................... 251.000.00-1.00---------------------------
.................................................CCTGCCTCAGCTCCCAACAC..................................................................................................................................................................................... 201.000.00-1.00---------------------------
......CGTTGGCCAGGCTGGTCTCAAGCGA........................................................................................................................................................................................................................... 251.000.00-1.00---------------------------
...............GGCTGGTCTCAAACTCCTGACCTGGTC................................................................................................................................................................................................................ 271.000.001.00----------------------------
......CGTTGGCCAGGCTGGTCTCAACA............................................................................................................................................................................................................................. 231.000.00-1.00---------------------------
......CGTTGGCCAGGCTGGTCTCAGCGA............................................................................................................................................................................................................................ 241.000.001.00----------------------------
......CGTTGGCCAGGCTGGTCTGCT............................................................................................................................................................................................................................... 211.000.00-1.00---------------------------
........................................................................................CTGGCTGGGTGCAGTGGC................................................................................................................................................ 1801.001.00-------------1.00---------------
..................................................................AGTGCTGGGGTTACAGGCGTGG.................................................................................................................................................................. 221.000.00-1.00---------------------------
........................................................................GGGGTTACAGGCGTGAGCCACCGCC......................................................................................................................................................... 251.000.00---1.00-------------------------
......CGTTGGCCAGGCTGGTCTCAAACTCCTGAC...................................................................................................................................................................................................................... 301.000.00-------1.00---------------------
.........................................................................GGGTTACAGGCGTGAGCCACTGAAC........................................................................................................................................................ 251.000.001.00----------------------------
...............GGCTGGTCTCAAACTCCTGACCTCAGGTGGTC........................................................................................................................................................................................................... 321.000.001.00----------------------------
...............................................CACCTGCCTCAGCTCCCAAA....................................................................................................................................................................................... 201.000.00-------------------------1.00---
..........................................................................................................................................................................CTTGAAAATGTTCTTTGCTGG........................................................... 211.000.00----------------------------1.00
...............GGCTGGTCTCAAACTCCTGAGCCC................................................................................................................................................................................................................... 241.000.001.00----------------------------
.....ACGTTGGCCAGGCTGGTCTCAATGG............................................................................................................................................................................................................................ 251.000.00-1.00---------------------------
......CGTTGGCCAGGCTGGTCTCAAACTCGCA........................................................................................................................................................................................................................ 281.000.00-1.00---------------------------
....................................................................TGCTGGGGTTACAGGCGTGAGCCATCCC.......................................................................................................................................................... 281.000.001.00----------------------------
........................................................................................................................................................................................................................................AACAGCGATTACTTTCTGCC 201.000.00---1.00-------------------------
...............................CTGACCTCAGGTGATCCACCTCGA................................................................................................................................................................................................... 241.000.00---------------1.00-------------
..................................................................AGTGCTGGGGTTACAGGCGTGAGGGG.............................................................................................................................................................. 261.000.00---1.00-------------------------
......CGTTGGCCAGGCTGGTCTCAAACTGCGA........................................................................................................................................................................................................................ 281.000.001.00----------------------------
......CGTTGGCCAGGCTGGTCTCAAGCCA........................................................................................................................................................................................................................... 251.000.00-1.00---------------------------
.................................................................AAGTGCTGGGGTTACAGGCGTAT.................................................................................................................................................................. 231.000.00---1.00-------------------------
......CGTTGGCCAGGCTGGTCTCAGAGA............................................................................................................................................................................................................................ 241.000.00-1.00---------------------------
....................................................................TGCTGGGGTTACAGGCGTGAGTTA.............................................................................................................................................................. 241.000.00----1.00------------------------
......CGTTGGCCAGGCTGGTCTGACA.............................................................................................................................................................................................................................. 221.000.00-1.00---------------------------
.................................................CCTGCCTCAGCTCCCGAGA...................................................................................................................................................................................... 191.000.00------------------------1.00----
........................................................................................................................................................................................................................................AACAGCGATTACTTTCATTTG 211.000.00----1.00------------------------
......CGTTGGCCAGGCTGGTCTGTGC.............................................................................................................................................................................................................................. 221.000.001.00----------------------------
.....................................................................................................................................................................................................................................GAAAGTAATCGCTGTTCCA.. 1911.001.00-----------------1.00-----------
......CGTTGGCCAGGCTGGTCTCAAACTCCTATGA..................................................................................................................................................................................................................... 311.000.00-1.00---------------------------
......CGTTGGCCAGGCTGGTCTCAAACTCCTGTA...................................................................................................................................................................................................................... 301.000.001.00----------------------------
..........................................TTGGGAGCTGAGGCAGGTGGATCA........................................................................................................................................................................................ 2490.110.110.11----------------------------