ID: uc009wyd.2_intron_2_0_chr1_182852352_f
GENE: (3)
chr1:182852302-182852504+


(1)
AGO2.ip 		(6)
B-CELL 		(2)
BRAIN 		(3)
BREAST 		(13)
CELL-LINE 		(1)
CERVIX 		(4)
HEART 		(1)
HELA 		(4)
LIVER 		(2)
OTHER 		(6)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
CACTGGACCAGATAATAATTTGGATGTTGTTATCTCCCTCCTGGCCTTTGGTGTGTACCCCAATGTATGCTATCATAAGGAAAAGAGGAAGATTCTCACCACTGAAGGGCGTAATGCACTTATCCACAAATCATCTGTTAATTGTCCTTTTAGTAGCCAAGACATGAAGTACCCATCTCCCTTCTTTGTATTTGGTGAAAAGG
......................................................................................(((.((((..........(((.((.....)).))).......)))).)))...................................................................
.....................................................................................86.....................................................141............................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR040027(GSM532912)
G220T. (cervix)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR343336SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343337SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
..........................................................................................GATTCTCACCACTGAAGGGCG............................................................................................2115.005.00-5.00----------------------------------------------
............................................................................AAGGAAAAGAGGAAGATTCTCACC.......................................................................................................2413.003.00------2.00-------------1.00---------------------------
..............................................................................................CTCACCACTGAAGGGCGTAA.........................................................................................2013.003.003.00-----------------------------------------------
.............................................................................AGGAAAAGAGGAAGATTCTCACCAC.....................................................................................................2513.003.00---3.00--------------------------------------------
.........................................................................................................................................................................................TTGTATTTGGTGAAAAG.1752.202.20------------1.20-----------------0.40--------------0.200.200.20
........................................................................................AAGATTCTCACCACTGAAGGGCGTAATG.......................................................................................2812.002.00--------2.00---------------------------------------
..............ATAATTTGGATGTTGGGAC..........................................................................................................................................................................192.000.00-----------2.00------------------------------------
...............................................................................................TCACCACTGAAGGGCGTAATG.......................................................................................2112.002.002.00-----------------------------------------------
.................................................................................................ACCACTGAAGGGCGTAATG.......................................................................................1912.002.001.00------1.00----------------------------------------
..............................................................................................CTCACCACTGAAGGGCGTAATG.......................................................................................2212.002.002.00-----------------------------------------------
....................................................................................................ACTGAAGGGCGTAATGCACA...................................................................................202.000.00---------2.00--------------------------------------
....................................................................................GAGGAAGATTCTCACCAC.....................................................................................................1812.002.00-----------------------1.00-1.00----------------------
...................................................................................................................................................TTTTAGTAGCCAAGACATGAAGTACC..............................2631.331.33----0.67---0.33---------------------------------0.33-----
.............................................................................AGGAAAAGAGGAAGATTCTCA.........................................................................................................2111.001.00------1.00-----------------------------------------
......................................................................................................................CTTATCCACAAATCATCTG..................................................................1921.001.00--1.00---------------------------------------------
........................................................................................AAGATTCTCACCACTGAAGGGCGTAAT........................................................................................2711.001.00-------------1.00----------------------------------
.............................................................................AGGAAAAGAGGAAGATTCTCACCACTGAAGGG..............................................................................................3211.001.00-----1.00------------------------------------------
.....................................................................................................................................TCTGTTAATTGTCCTTCT....................................................181.000.00----------------------1.00-------------------------
.............................................................................AGGAAAAGAGGAAGATTCT...........................................................................................................1911.001.00---------------------1.00--------------------------
....................TGGATGTTGTTATCTCCCTCC..................................................................................................................................................................2111.001.00----1.00-------------------------------------------
...................................................................................................................................................TTTTAGTAGCCAAGACATCA....................................201.000.00-------1.00----------------------------------------
.............................................................................AGGAAAAGAGGAAGATTCTCACCA......................................................................................................2411.001.00--------------1.00---------------------------------
.........................................................................................AGATTCTCACCACTGAAGGGCGTAATGC......................................................................................2811.001.00---------------1.00--------------------------------
..............................................................................GGAAAAGAGGAAGATTCTCACCA......................................................................................................2311.001.00-----------------------------1.00------------------
.................................................................................................................ATGCACTTATCCACAAATCATCTG..................................................................2421.001.00---------------------------------0.50------0.50-------
....................TGGATGTTGTTATCTCCCTCCTGGCC.............................................................................................................................................................2611.001.00----------1.00-------------------------------------
.................................................................TATGCTATCATAAGGAAAAGATG...................................................................................................................231.000.00-----1.00------------------------------------------
.................................................................................AAAGAGGAAGATTCTCACCACTGAAGGGC.............................................................................................2911.001.00-----1.00------------------------------------------
........................................................................................AAGATTCTCACCACTGAAGGGCGTAATGCA.....................................................................................3011.001.00----------------1.00-------------------------------
...................................................................................................CACTGAAGGGCGTAATGCA.....................................................................................1911.001.00----------------------------1.00-------------------
.........................................................................CATAAGGAAAAGAGGAAGATTC............................................................................................................2211.001.00--------------------------1.00---------------------
...................................................................................................................................................TTTTAGTAGCCAAGACATGAAGTACCC.............................2721.001.00----0.50-------------------------------0.50-----------
..........................................................................ATAAGGAAAAGAGGAAATGG.............................................................................................................201.000.00------------------------1.00-----------------------
.......................................................................................GAAGATTCTCACCACTGAAGGGCG............................................................................................2411.001.00-1.00----------------------------------------------
......................................................................................GGAAGATTCTCACCACTGAAGGGC.............................................................................................2411.001.001.00-----------------------------------------------
.............................................................................AGGAAAAGAGGAAGATTC............................................................................................................1811.001.00---1.00--------------------------------------------
.......................................................................ATCATAAGGAAAAGAGGAAGATTC............................................................................................................2411.001.00------------------1.00-----------------------------
.............................................................................AGGAAAAGAGGAAGATTCTCACCACTGAAGGGC.............................................................................................3311.001.00-----------------1.00------------------------------
....................TGGATGTTGTTATCTCCCTCCTGGCCTTTGG........................................................................................................................................................3111.001.00----------1.00-------------------------------------
.........................................................................................................................................................................TACCCATCTCCCTTCTTTGT..............2011.001.001.00-----------------------------------------------
......................................................................................................................................................TAGTAGCCAAGACATGAAGTACC..............................2330.670.670.67-----------------------------------------------
...................................................................................AGAGGAAGATTCTCACC.......................................................................................................1720.500.50-------------------------------------0.50----------
....................................................................................................................CACTTATCCACAAATCATCT...................................................................2020.500.50--0.50---------------------------------------------
....................................................................................................................CACTTATCCACAAATCATCTAATT...............................................................2420.500.50--------------------------------------0.50---------
...................................................................................................................................................TTTTAGTAGCCAAGACATGAAGTACCCATC..........................3020.500.50-----------------------------------------0.50------
..................................................................................................................................TCATCTGTTAATTGTCC........................................................1720.500.50-------------------------------0.50----------------
....................................................................................................................CACTTATCCACAAATCATCTGTTAATTG...........................................................2820.500.50--0.50---------------------------------------------
....................................................................................................................................................................TGAAGTACCCATCTCCCTTC...................2020.500.50---------------------------------------0.50--------
.............AATAATTTGGATGTTGTTAT..........................................................................................................................................................................2020.500.50-------0.50----------------------------------------
.................................................................TATGCTATCATAAGGAAAAG......................................................................................................................2020.500.50-----------------------------------0.50------------
...............................................................................................................................AAATCATCTGTTAATTGTC.........................................................1920.500.50----0.50-------------------------------------------
...................................................................................................................................CATCTGTTAATTGTCCT.......................................................1720.500.50----------------------------------0.50-------------
...................................................................................................................................................TTTTAGTAGCCAAGACATGA....................................2030.330.330.33-----------------------------------------------
........................................................................................................................................................................................TTTGTATTTGGTGAAAAG.1830.330.33------------------------------0.33-----------------
....................................................................................................................................................TTTAGTAGCCAAGACATGAAGTACC..............................2530.330.33----0.33-------------------------------------------
............................................................................AAGGAAAAGAGGAAGATT.............................................................................................................1840.250.25-------------------------------------------0.25----
...................................................................................................................................................TTTTAGTAGCCAAGAC........................................1650.200.20--------------------------------------------0.20---

Antisense strand
CACTGGACCAGATAATAATTTGGATGTTGTTATCTCCCTCCTGGCCTTTGGTGTGTACCCCAATGTATGCTATCATAAGGAAAAGAGGAAGATTCTCACCACTGAAGGGCGTAATGCACTTATCCACAAATCATCTGTTAATTGTCCTTTTAGTAGCCAAGACATGAAGTACCCATCTCCCTTCTTTGTATTTGGTGAAAAGG
......................................................................................(((.((((..........(((.((.....)).))).......)))).)))...................................................................
.....................................................................................86.....................................................141............................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR040027(GSM532912)
G220T. (cervix)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR343336SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343337SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
.......................................................TACCCCAATGTATGCGTGG................................................................................................................................. 191.000.00---------------------------1.00--------------------
.................ATTTGGATGTTGTTAATCG....................................................................................................................................................................... 191.000.00-------------------1.00----------------------------
................AATTTGGATGTTGTTATATA....................................................................................................................................................................... 201.000.00--1.00---------------------------------------------
....................................................................................................................................AAGGACAATTAACAGAT...................................................... 1720.500.50--------------------------------0.50---------------