ID: uc009wxl.2_intron_16_0_chr1_180010384_f
GENE: CEP350(17)
chr1:180010334-180010846+


(1)
B-CELL
(2)
BRAIN
(9)
BREAST
(17)
CELL-LINE
(2)
CERVIX
(5)
HEART
(1)
KIDNEY
(6)
LIVER
(2)
OTHER
(14)
SKIN
(1)
TESTES
(4)
UTERUS
(1)
XRN.ip

Sense strand
CTCTGGAGAGTCAGAGACAATTAGAAGAAACCCGAAACAAAGCAGCTCAGGTAACTTATTTTGCAGCAGGTTCTTGTTTTTTAAACCTAAATTTGTATCTTAGAAATTACTTTAGCGTTCTTTTAATTATATAGGAGAAAAAAGTGTATATATAAATAATAAAGTTTTAGTACTTTTTATGGGATAATGCCATGTAATTCGATTTTTGTTACAACCTTGTGAAATAAATTGTCAAGACTCATTTCCAGTTTAGGGAAGTGGCAACTGAGGTACGTTGTATTTATTTATCCACAGATACAGTAACTTGTGAACAGTAGAGTTAAGACTTAAACCATGAAATCCAGATTGTAGTAAAGTGTTTTTTACTATGAATAAGACATGAAATAAATTTATAAATTAAAATTAATTCAGGAGGAGGGGAGATTAAAACATAACTTCTTTTTTAAACCCCTTTTATTTAAAGGTCCATGCAGAATCATTACAGCAGGTGGTTCAATCACAACGGGAAGTAAC
............................................................................................................................................................................................................................................................................(((....(((((((..........))))))).((((((..........))))))........)))....................................................................................................................................................................................
....................................................................................................................................................................................................................................................................261...............................................................................343........................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553575(SRX182781)
source: Kidney. (Kidney)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189787SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189784SRR189782SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR040042(GSM532927)
G428N. (cervix)
TAX577580(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040031(GSM532916)
G013T. (cervix)
SRR029128(GSM416757)
H520. (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577739(Rovira)
total RNA. (breast)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577742(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
TAX577453(Rovira)
total RNA. (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
.........................................................................................................................................................................................................................................................................TGAGGTACGTTGTATAGTT.....................................................................................................................................................................................................................................1958.000.004.0011.005.002.005.00--2.003.004.001.001.00-3.00----2.00--2.001.001.001.002.00--1.00--1.00----1.00--1.00----------1.00-----1.00-1.00---1.00-----
.........................................................................................................................................................................................................................................................................TGAGGTACGTTGTATAGT......................................................................................................................................................................................................................................1820.000.008.002.002.00-1.00---1.00-1.00------------1.00---------1.00-------1.001.00------------1.00------------
.........................................................................................................................................................................................................................................................................TGAGGTACGTTGTATGGTT.....................................................................................................................................................................................................................................1917.000.004.002.003.002.00------1.00-------------1.00-------------1.00-----1.00----1.00---------1.00--------
.........................................................................................................................................................................................................................................................................TGAGGTACGTTGTATAG.......................................................................................................................................................................................................................................1714.000.002.007.003.00-------1.00-------------------------------------------1.00-------------
.........................................................................................................................................................................................................................................................................TGAGGTACGTTGTATAGA......................................................................................................................................................................................................................................187.000.004.002.001.00-----------------------------------------------------------------
.........................................................................................................................................................................................................................................................................TGAGGTACGTTGTATGGT......................................................................................................................................................................................................................................186.000.001.001.00-1.00----------------2.00---------1.00-------------------------------------
................................CGAAACAAAGCAGCTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.005.00-----4.001.00-------------------------------------------------------------
.......................GAAGAAACCCGAAACAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.004.00---1.00----------------------2.00----------1.00------------------------------
.........................................................................................................................................................................................................................................................................TGAGGTACGTTGTATTGTT.....................................................................................................................................................................................................................................194.000.002.00------2.00------------------------------------------------------------
...............................CCGAAACAAAGCAGCTCAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003.00--------------3.00-----------------------------------------------------
.........................................................................................................................................................................................................................................................................TGAGGTACGTTGTATGG.......................................................................................................................................................................................................................................173.000.001.00-1.001.00----------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................TAAGACTTAAACCATGAAA..............................................................................................................................................................................1912.002.00----------------2.00---------------------------------------------------
...........................................................................................................................................................................................................................................................AGGGAAGTGGCAACTGAG....................................................................................................................................................................................................................................................1812.002.00-----2.00--------------------------------------------------------------
..........................GAAACCCGAAACAAAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002.00------2.00-------------------------------------------------------------
........................AAGAAACCCGAAACAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-------------------------------------------1.00------------------------
............................................................................................................................................................................................................................................................................................................................................................................ACTATGAATAAGACATC....................................................................................................................................171.000.00------------------------------------------------------------1.00-------
....GGAGAGTCAGAGACAATTAGAAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00----------------------------1.00---------------------------------------
.........................................................................................................................................................................................................................................................................TGAGGTACGTTGTATAGTC.....................................................................................................................................................................................................................................191.000.00-------1.00------------------------------------------------------------
......................................................................................................................................................TATAAATAATAAAGTCAGA........................................................................................................................................................................................................................................................................................................................................................191.000.00-----------------------------------------------1.00--------------------
.........................................................................................................................................................................................................................................................................TGAGGTACGTTGTATATTT.....................................................................................................................................................................................................................................191.000.00-1.00------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAACATAACTTCTTTTT......................................................................2111.001.00------------1.00-------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAACGGGAAGTAACTTA191.000.00----------------------------------1.00---------------------------------
....................................................AACTTATTTTGCAGCAGGAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00-----------1.00--------------------------------------------------------
......................................................................................................................................................................................................................................................AGTTTAGGGAAGTGGATTG........................................................................................................................................................................................................................................................191.000.00-----------------------------1.00--------------------------------------
.....................................................................GTTCTTGTTTTTTAAATACT........................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00-----------------1.00--------------------------------------------------
..........................................................................................................................................................................................................................................................TAGGGAAGTGGCAACTGAGGTACG...............................................................................................................................................................................................................................................2411.001.00-----------------------------------1.00--------------------------------
.....................................................................GTTCTTGTTTTTTAAATACA........................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00----------------------------------------------------1.00---------------
...................................................................................................................................................................................................................................................................................................................TGAACAGTAGAGTTAAGACTTAAATA....................................................................................................................................................................................261.000.00---------------------------1.00----------------------------------------
...................ATTAGAAGAAACCCGAAACAAAGCAGCTCAGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................3311.001.00---1.00----------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAATCACAACGGGAAG....1811.001.00------------1.00-------------------------------------------------------
.........................................................................................................................................................................................................................................................................TGAGGTACGTTGTATA........................................................................................................................................................................................................................................161.000.00-1.00------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................TGAGGTACGTTGTATAGTA.....................................................................................................................................................................................................................................191.000.001.00-------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................AATCCAGATTGTAGTAA...............................................................................................................................................................1711.001.001.00-------------------------------------------------------------------
..............AGACAATTAGAAGAAACCCGAAACAAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3111.001.00---------------------------------------------------------1.00----------
....................................................................................................................................................................................................................................................CCAGTTTAGGGAAGTGGCAA.........................................................................................................................................................................................................................................................2011.001.00------1.00-------------------------------------------------------------
.......................GAAGAAACCCGAAACAAAGCAGCTCAGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................301.000.00---1.00----------------------------------------------------------------
....GGAGAGTCAGAGACAATTAGAAGAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00--------------------------------1.00-----------------------------------
........................AAGAAACCCGAAACAAAGCAGCTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00-----1.00--------------------------------------------------------------
.........................................................................................................................................................................................................................................................................TGAGGTACGTTGTATACTT.....................................................................................................................................................................................................................................191.000.00----------------------1.00---------------------------------------------
................................CGAAACAAAGCAGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00------1.00-------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................TGTGAACAGTAGAGTTAAGACTTAAACC....................................................................................................................................................................................2811.001.00----------------------------------------1.00---------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATCACAACGGGAAGT...1811.001.00----1.00---------------------------------------------------------------
............................................................................................................ACTTTAGCGTTCTTTTAA...................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00----------------------------------------------1.00---------------------
..................................................................................................................................................................................................................................................................................................................................................ATCCAGATTGTAGTATATA............................................................................................................................................................191.000.00---------------------------1.00----------------------------------------
.....................................................................GTTCTTGTTTTTTAAGTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-----------------1.00--------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................CCAGATTGTAGTAAA..............................................................................................................................................................1540.250.25---------------------------------------------------------------0.25----
.......................................................................................................................................................................................................................................................GTTTAGGGAAGTGGCA..........................................................................................................................................................................................................................................................1640.250.25----------------------------------------------------------------0.25---
...................................................................................................................................................................................................................................................................................................................................................TCCAGATTGTAGTAA...............................................................................................................................................................1550.200.20-------------------------------------------------------------------0.20
.................................................................................................................................................................................................................................................................................................................TGTGAACAGTAGAGTT................................................................................................................................................................................................1650.200.20------------------------------------------------------------------0.20-
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AAACATAACTTCTTTTTT.....................................................................1870.140.14-----------------------------0.14--------------------------------------

Antisense strand
CTCTGGAGAGTCAGAGACAATTAGAAGAAACCCGAAACAAAGCAGCTCAGGTAACTTATTTTGCAGCAGGTTCTTGTTTTTTAAACCTAAATTTGTATCTTAGAAATTACTTTAGCGTTCTTTTAATTATATAGGAGAAAAAAGTGTATATATAAATAATAAAGTTTTAGTACTTTTTATGGGATAATGCCATGTAATTCGATTTTTGTTACAACCTTGTGAAATAAATTGTCAAGACTCATTTCCAGTTTAGGGAAGTGGCAACTGAGGTACGTTGTATTTATTTATCCACAGATACAGTAACTTGTGAACAGTAGAGTTAAGACTTAAACCATGAAATCCAGATTGTAGTAAAGTGTTTTTTACTATGAATAAGACATGAAATAAATTTATAAATTAAAATTAATTCAGGAGGAGGGGAGATTAAAACATAACTTCTTTTTTAAACCCCTTTTATTTAAAGGTCCATGCAGAATCATTACAGCAGGTGGTTCAATCACAACGGGAAGTAAC
............................................................................................................................................................................................................................................................................(((....(((((((..........))))))).((((((..........))))))........)))....................................................................................................................................................................................
....................................................................................................................................................................................................................................................................261...............................................................................343........................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553575(SRX182781)
source: Kidney. (Kidney)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189787SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189784SRR189782SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR040042(GSM532927)
G428N. (cervix)
TAX577580(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040031(GSM532916)
G013T. (cervix)
SRR029128(GSM416757)
H520. (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577739(Rovira)
total RNA. (breast)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577742(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
TAX577453(Rovira)
total RNA. (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................................................ATATAGGAGAAAAAACCG............................................................................................................................................................................................................................................................................................................................................................................... 184.000.00---------------3.00---------------------------------------------1.00------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGAATCATTACAGCAAA......................... 201.000.00-------------------1.00------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAATCATTACAGCCAAA........................ 201.000.00-------------------1.00------------------------------------------------
......................................................................................................................................GAGAAAAAAGTGTATTTAG........................................................................................................................................................................................................................................................................................................................................................................ 191.000.00-----------------------------------------------------1.00--------------
..............................................................................................................TTTAGCGTTCTTTTAATTG................................................................................................................................................................................................................................................................................................................................................................................................ 191.000.00-----------1.00--------------------------------------------------------
......................................................................................................................................GAGAAAAAAGTGTATTGTG........................................................................................................................................................................................................................................................................................................................................................................ 191.000.00---------------------------------------------------1.00----------------
.........................................................................................................................................AAAAAAGTGTATATATAAATTGA................................................................................................................................................................................................................................................................................................................................................................. 231.000.00------------------------------------------------1.00-------------------
........................................................................................................................................................................AGTACTTTTTATGGGCTG....................................................................................................................................................................................................................................................................................................................................... 181.000.00---------------------------------------------1.00----------------------
..................................................................................................................................................................................ATGGGATAATGCCATGTG............................................................................................................................................................................................................................................................................................................................. 181.000.00------------1.00-------------------------------------------------------
.............................................................................................................AAAAGAACGCTAAAG..................................................................................................................................................................................................................................................................................................................................................................................................... 1540.250.25-----------------------------------------------------------------0.25--