ID: uc009wwv.2_intron_6_0_chr1_176012404_r
GENE: RFWD2(10)
chr1:176012354-176012895-


(1)
AGO2.ip 		(1)
AGO3.ip 		(10)
B-CELL 		(3)
BRAIN 		(4)
BREAST 		(20)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(5)
HELA 		(7)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(17)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
CTGTTATTTTATGGGATGGATTCACAGGACAGAGGTCAAAGGTCTATCAGGTAAATAAGGGTACTAGTTACATGTTATATGAATCATACATTTGGTTTGTTAAAACTTTTAGAACTTCATGTGCCTTATAATTACAGATTTGAAGTCACTATTTAGTATTTTTTATACCTGTGTAACACCTATGCAATACCAAATGCTTTTTTTTCCTGTCTCCCACTTTTGGTACCATATGCTTTTCCAAAGCATTTCTTCAGACTTCGGTCTTTATGGAATGTATCAGGTAAATTTCTAAAAGCAATAATTTTGGTAAATGTATAAAAAGTTTTGGAAGTACTTTATATCAACATCTTATTTGCTTTTCATTTGTTTTCTAGCCTGTTGTCTTTCCCTCTCCCCGTAACAATAAATTGATATCAGGTTTTTTTTTTTCTTGCTTTATTCATTTTGAGATCTGTATTCTATCTGAGGCTACTGTCTTCTTTCTGCTTCCAGGAGCATGAGAAGAGGTGTTGGAGTGTTGACTTTAATTTGATGGATCCTAA
..............................................................................................................................................................................................................................................................................................................................................................................................................................((((((((........................))))))))..........(((((...............))))).....................................................
.............................................................................................................................................................................................................................................................................................................................................................................................................................414...........................................................................492................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189784SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR040025(GSM532910)
G613T. (cervix)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		TAX577453(Rovira)
total RNA. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTCTTGCTTGGCG......................................................................................................2254.000.0045.009.00--------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTCTTGCTTGGCG......................................................................................................2142.000.0035.007.00--------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTTTTTTTTCTTGCTTTAGTC.....................................................................................................2611.000.0011.00---------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGTGTTGAC....................1618.008.00----8.00-----------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAGGTGTTGGAGTGTT.......................2018.008.00------1.00--1.00-2.00-----------1.00-------1.00----------1.00-----------1.00---------------------
...........................................................................................................................................................................................................................................................................................................................................TACTTTATATCAACATC..................................................................................................................................................................................................1716.006.00---6.00------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAGGTGTTGGAGTGT........................1914.004.00------1.00-1.00--1.00------1.00---------------------------------------------------------
..............GATGGATTCACAGGACAGAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2223.503.50---------2.500.50----------------------------------------------------0.50------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAGGTGTTGGAGTGTTG......................2113.003.00--------2.00---------------------------------------1.00---------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTTTTTTTTCTTGC............................................................................................................1913.003.001.00------------2.00--------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAGGTGTTGGAGTGTTGA.....................2213.003.00---------1.00----1.00---1.00---------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGAGAAGAGGTGTTGG.............................2013.003.00-------1.00------------2.00-------------------------------------------------------
.........................AGGACAGAGGTCAAAGGTCTATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.001.00--3.00-------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGAGGTGTTGGAGTGTTGA.....................2313.003.00-----3.00----------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGTGTTGGAGTGTATAT....................202.000.00----------1.00---------------------------------1.00-------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAGGTGTTGGAGTG.........................1812.002.00-------------------2.00--------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGTTTTTTTTTTTCTCATC...........................................................................................................222.000.00-2.00--------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCTACTGTCTTCTTTCTGCTT......................................................2412.002.00----------------------2.00-----------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAGGTGTTGGAGTGTTGT.....................2212.003.00-----------------2.00----------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGTTTTTTTTTTTCTCCC............................................................................................................212.000.002.00---------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGAAGAGGTGTTGGAGTGTTG......................2412.002.00--2.00-------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAGGTGTTGGAGTGTG.......................2012.004.00------2.00---------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAGGTGTTGGAGTGTTGAC....................2312.002.00--1.00-------------------------1.00-----------------------------------------------
....................TTCACAGGACAGAGGTCAAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2221.501.50-----1.50----------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGTTTTTTTTTTTCTTTTAC..........................................................................................................231.000.00-1.00--------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTTTTTTTTCTTGCTTGGGG......................................................................................................251.000.001.00---------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTCTTGCTGGCC.......................................................................................................211.000.001.00---------------------------------------------------------------------------
..............................AGAGGTCAAAGGTCTATCAGGAGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.00----------1.00-----------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTCTTGCTTTATTGGG...................................................................................................201.000.001.00---------------------------------------------------------------------------
...........................................................................................................TTTAGAACTTCATGTGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-------------------------------------------1.00--------------------------------
....................................................................................................................................................CTATTTAGTATTTTTTATATT.....................................................................................................................................................................................................................................................................................................................................................................................211.000.00---------------1.00------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGTTTTTTTTTTTCTCGTC...........................................................................................................231.000.001.00---------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTTGACTTTAATTTGATGGAT.....2511.001.00--------1.00-------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAAGAGGTGTTGGAGTGTTGACT...................2611.001.00-1.00--------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGAGAAGAGGTGTTGGAGTGTTGACTTT.................3111.001.00----------------1.00-----------------------------------------------------------
..............................AGAGGTCAAAGGTCTATCAGGAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.00----------1.00-----------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTTTTTTTTCTTGCTTTAGTCT....................................................................................................271.000.001.00---------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTTTTTTTTCTTGCTTTAGGC.....................................................................................................261.000.001.00---------------------------------------------------------------------------
..............GATGGATTCACAGGACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1921.001.00-----------------------------1.00----------------------------------------------
...............ATGGATTCACAGGACAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00---------------------1.00------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................AAGTACTTTATATCAACA....................................................................................................................................................................................................1811.001.00---1.00------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTCTTGCTGTCA.......................................................................................................211.000.00-1.00--------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGTGTTGACTTTAATTTGATGGATA....281.000.00-------1.00--------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGTGTTGGAGTGTTGACTTTAATTTGATGGA......3411.001.00-----------------------------------------------------1.00----------------------
..................GATTCACAGGACAGAGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00-----1.00----------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTCTTGCTTTATCG.....................................................................................................231.000.001.00---------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGAGGTGTTGGAGT..........................1811.001.00-----------------------------------------1.00----------------------------------
....TATTTTATGGGATGGATTCACAGGACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001.00------------1.00---------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTCTTGCGCCG........................................................................................................201.000.001.00---------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGTGTTGACTTTTGT..............181.000.00-------------------------------------1.00--------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTCTTGCTTTGAC......................................................................................................211.000.001.00---------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGAGAAGAGGTGTTGGAGTGTTGACC...................301.000.00---1.00------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCATGAGAAGAGGTG.................................1911.001.00------1.00---------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTTTTTTTTCTTGCCGAC........................................................................................................2311.003.001.00---------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTTTTTTCTTGCTTTGTTT.....................................................................................................241.000.001.00---------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGTTTTTTTTTTTCTC..............................................................................................................201.000.00-1.00--------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTCTTGCTTGCCT......................................................................................................221.000.001.00---------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTTTTTTCTTGCTGGG........................................................................................................211.000.001.00---------------------------------------------------------------------------
...............ATGGATTCACAGGACAGAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00----------------------------------1.00-----------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGAGAAGAGGTGTTGGAGTGTTG......................2711.001.00-------1.00--------------------------------------------------------------------
................TGGATTCACAGGACAGAGGTCAAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2721.001.00------------1.00---------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTCTTGCTTTTCGG.....................................................................................................231.000.00-1.00--------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGAAGAGGTGTTGGAGTGTT.......................2311.001.00---------------------1.00------------------------------------------------------
...........................GACAGAGGTCAAAGGTCTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00--------1.00-------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGAAGAGGTGTTGGAGTGTTGACTTTAAT..............3211.001.00------------1.00---------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTCTTGCTTTAGT......................................................................................................221.000.00-------------1.00--------------------------------------------------------------
...........................................................................................TTGGTTTGTTAAAACTTTTAGAACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00---------------------------------------1.00------------------------------------
.........................AGGACAGAGGTCAAAGGTCTATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00--1.00-------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................TATCAGGTTTTTTTTTGAGG...............................................................................................................201.000.001.00---------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGAAGAGGTGTTGGAGTGTTGACTTT.................2811.001.00----------------------------------------------------1.00-----------------------
...................................................................................................................................................................................................................................................CATTTCTTCAGACTTCGGT........................................................................................................................................................................................................................................................................................1911.001.00----------------1.00-----------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................TGATATCAGGTTTTTTCTCG..................................................................................................................201.000.00--------------------------------------1.00-------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTCTTGCTTTATTCATTTTGAG.............................................................................................3111.001.00---1.00------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGAAGAGGTGTTGGAGTGTTGACTTTAATTTGA..........3611.001.00----------------------------------------1.00-----------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAGGTGTTGGAGTGTTGTA....................2311.003.00-----------------------------------1.00----------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTCTTGCTTGGCA......................................................................................................211.000.001.00---------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTTTTTTTTCTTGCTTTAATC.....................................................................................................261.000.001.00---------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTGGAGTGTTGACTCTG................211.000.00----------------------------------------------1.00-----------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTCTTGCTTACTT......................................................................................................211.000.00---1.00------------------------------------------------------------------------
.....ATTTTATGGGATGGATTCACAGGACAGAGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3211.001.00---------------1.00------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTTTTTTTTCGC..............................................................................................................171.000.001.00---------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAGGTGTTGGAGTGTTGACTTT.................2611.001.00---------------------------------1.00------------------------------------------
.........................AGGACAGAGGTCAAAGGTCTATCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00--1.00-------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGCATGAGAAGAGGTGTTG..............................2311.001.00------------------------------------1.00---------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTTTTTTTTCTGGAG...........................................................................................................201.000.001.00---------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGTTGGAGTGTTGACTTT.................2111.001.00---------------------------------------------1.00------------------------------
.........................AGGACAGAGGTCAAAGGTCTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00--1.00-------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGAGAAGAGGTATTG..............................191.000.00-----------------------------------------------1.00----------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTTTTTTTTCTTGCTGAGG.......................................................................................................241.000.001.00---------------------------------------------------------------------------
...............ATGGATTCACAGGACAGAGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00---------------------------1.00------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTGGAGTGTTGTGG...................181.000.00--------------------------------------------------1.00-------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGACTTTAATTTGATGGA......2111.001.00-------------------------------------------------1.00--------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGATCTGTATTCTATCTGAGGCTACT.....................................................................2911.001.00---------------------------------------------------1.00------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGTTTTTTTTTTTCTTTGAG..........................................................................................................231.000.00-1.00--------------------------------------------------------------------------
....................................................................................................................................................................................................................CCCACTTTTGGTACCA..........................................................................................................................................................................................................................................................................................................................1660.830.83-------------------------0.17----------------------------------------------0.170.170.170.17
........................CAGGACAGAGGTCAAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.500.50-----------------------------------------------------------0.50----------------
.........................AGGACAGAGGTCAAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.500.50--0.50-------------------------------------------------------------------------
.............GGATGGATTCACAGGACAGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.500.50-----------0.50----------------------------------------------------------------
..........ATGGGATGGATTCACAGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.500.50-------0.50--------------------------------------------------------------------
..............GATGGATTCACAGGACAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.500.50----------------------------------------------------------------0.50-----------
..................GATTCACAGGACAGAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.500.50---------------------------------------------------------------------0.50------
........................CAGGACAGAGGTCAAAGGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.500.50--0.50-------------------------------------------------------------------------
....................TTCACAGGACAGAGGTCAAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.500.50-------------------------------------------------------------0.50--------------
...........TGGGATGGATTCACAGGACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.500.50--------------------------------------------------------------0.50-------------
...............ATGGATTCACAGGACAGAGGTCAAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.500.50-------------------------------------------------------0.50--------------------
................TGGATTCACAGGACAGAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.500.50-----------------------0.50----------------------------------------------------
................TGGATTCACAGGACAGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.500.50------------------------------------------------------------0.50---------------
.........TATGGGATGGATTCACAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.500.50--------------0.50-------------------------------------------------------------
..............GATGGATTCACAGGACAGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.500.50-----0.50----------------------------------------------------------------------
................TGGATTCACAGGACAGAGGTCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.500.50---------------------------------------------------------0.50------------------
..........ATGGGATGGATTCACAGGACAGAGGTCAAAGGTCTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3620.500.50--------------------------------------------------------0.50-------------------
...............ATGGATTCACAGGACAGAGGTCAAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.500.50-------------------------------------------------------------------0.50--------
.............GGATGGATTCACAGGACAGAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.500.50--------------------------------------------------------------------0.50-------
......................CACAGGACAGAGGTCAAAGGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.500.50-------0.50--------------------------------------------------------------------
...............ATGGATTCACAGGACAGAGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.500.50------------------------------------------------------------------0.50---------
............GGGATGGATTCACAGGACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.500.50-----------------------------------------------------------------0.50----------
..............GATGGATTCACAGGACAGAGGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.503.50----------------------------------------------------------0.50-----------------
.........................................................................................................................................................................................................................................................................................................................................................................................GTTGTCTTTCCCTCTC.....................................................................................................................................................1630.330.33----------------------------------------------------------------------0.33-----
................................................................................................................................................................................................................................ACCATATGCTTTTCCA..............................................................................................................................................................................................................................................................................................................1670.140.14-------------------------------------------------------0.14--------------------

Antisense strand
CTGTTATTTTATGGGATGGATTCACAGGACAGAGGTCAAAGGTCTATCAGGTAAATAAGGGTACTAGTTACATGTTATATGAATCATACATTTGGTTTGTTAAAACTTTTAGAACTTCATGTGCCTTATAATTACAGATTTGAAGTCACTATTTAGTATTTTTTATACCTGTGTAACACCTATGCAATACCAAATGCTTTTTTTTCCTGTCTCCCACTTTTGGTACCATATGCTTTTCCAAAGCATTTCTTCAGACTTCGGTCTTTATGGAATGTATCAGGTAAATTTCTAAAAGCAATAATTTTGGTAAATGTATAAAAAGTTTTGGAAGTACTTTATATCAACATCTTATTTGCTTTTCATTTGTTTTCTAGCCTGTTGTCTTTCCCTCTCCCCGTAACAATAAATTGATATCAGGTTTTTTTTTTTCTTGCTTTATTCATTTTGAGATCTGTATTCTATCTGAGGCTACTGTCTTCTTTCTGCTTCCAGGAGCATGAGAAGAGGTGTTGGAGTGTTGACTTTAATTTGATGGATCCTAA
..............................................................................................................................................................................................................................................................................................................................................................................................................................((((((((........................))))))))..........(((((...............))))).....................................................
.............................................................................................................................................................................................................................................................................................................................................................................................................................414...........................................................................492................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189784SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR040025(GSM532910)
G613T. (cervix)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		TAX577453(Rovira)
total RNA. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
................................................................................................................................................................................................................................................................................................................................AGTTTTGGAAGTACTTTAGGCA........................................................................................................................................................................................................ 221.000.00------------------------------1.00---------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCATGAGAAGAACTG................................. 191.000.00------------------------1.00---------------------------------------------------
..GTTATTTTATGGGATCTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00-------------------------1.00--------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................TCCCTCTCCCCGTAACAAGCCA....................................................................................................................................... 221.000.001.00---------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGCATGAGAAGAGAGAC................................ 211.000.00--------------1.00-------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTTTTTTTTCTTGGAG.......................................................................................................... 201.000.00--------------------------------1.00-------------------------------------------
..........................GGACAGAGGTCAAAGGAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 201.000.00-------1.00--------------------------------------------------------------------
................................................................................................................................................................................................................ACCAAAAGTGGGAGAC.............................................................................................................................................................................................................................................................................................................................. 1630.330.33------------------------0.33---------------------------------------------------
......................................................................................................................................................................................................GGGAGACAGGAAAAAAA....................................................................................................................................................................................................................................................................................................................................... 1770.290.29-----------------------------------------------------------------------0.29----
.....................................................................................................................................................................................................GGGAGACAGGAAAAAAAA....................................................................................................................................................................................................................................................................................................................................... 1850.200.20-------------------------------------------------------0.20--------------------