ID: uc009wsl.1_intron_2_0_chr1_156877523_f
GENE: PEAR1(3)
chr1:156877473-156877756+


(2)
AGO2.ip
(1)
B-CELL
(10)
BREAST
(9)
CELL-LINE
(4)
CERVIX
(2)
HEART
(3)
HELA
(3)
LIVER
(3)
OTHER
(1)
RRP40.ip
(11)
SKIN

Sense strand
GTGTCTTCCAAACCCCACAGGGCTCCTGCAGCTGCCCCCCTGGCTGGATGGTATGGAGGGTGGGGCCTGTGGGCATGGGGTGTGGGTCTGGGGAGAATTCTGTGGGTGGTGCTAAGCAGGGCTCCAAGGTGAGTGAGGGGGGTGAGCTCTGTGGTTATGGGGGTGTCAAGGGGTCCTGTGGCCTTGGGGAGGAGGCTGGGTGCCTGGGGCCCTGTTGACCTCTTATCCCCACAGGGCACCATCTGCTCCCTGCCCTGCCCAGAGGGCTTTCACGGACCCAACTG
..................................................................................................................(((...(((((.............)))))..)))((((((..(((((((.((((((((((((((.((((((((........))))).)))))))))))).))))))))))))..))))))..................................................
..............................................................................................................111........................................................................................................................234................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR189782SRR040028(GSM532913)
G026N. (cervix)
TAX577738(Rovira)
total RNA. (breast)
SRR189784SRR189785SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR029124(GSM416753)
HeLa. (hela)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR040016(GSM532901)
G645N. (cervix)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR037937(GSM510475)
293cand2. (cell line)
SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
TAX577739(Rovira)
total RNA. (breast)
GSM532890(GSM532890)
G576T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
SRR040025(GSM532910)
G613T. (cervix)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR191416(GSM715526)
34genomic small RNA (size selected RNA from t. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
TAX577579(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
...................................................................................................................GCAGGGCTCCAAGGTGAAC......................................................................................................................................................19144.002.0038.00-------------1.00--------1.00------1.001.001.00----1.00--------
..................................................................................................................AGCAGGGCTCCAAGGTGA........................................................................................................................................................1818.008.00-3.00-1.001.00-1.00-------------------1.00-1.00-----------------
...................................................................................................................GCAGGGCTCCAAGGTGAA.......................................................................................................................................................1816.002.00-1.00-1.00-1.001.00---1.00------------------1.00----------------
..................................................................................................................AGCAGGGCTCCAAGGTGAA.......................................................................................................................................................1915.008.00-1.00--2.00--------1.00----1.00---------------------------
...................................................................................................................GCAGGGCTCCAAGGTGAACAG....................................................................................................................................................2115.002.00--2.00------1.00------------1.00-1.00---------------------
..................................................................................................................AGCAGGGCTCCAAGGTGAAC......................................................................................................................................................2013.008.003.00---------------------------------------------
.................................................................................................................AAGCAGGGCTCCAAGGTGA........................................................................................................................................................1912.002.00-1.00-1.00------------------------------------------
...................................................................................................................GCAGGGCTCCAAGGTGA........................................................................................................................................................1712.002.00-1.00---------------1.00----------------------------
..................................................................................................................AGCAGGGCTCCAAGGTGAACAG....................................................................................................................................................2212.008.00---1.00-1.00----------------------------------------
....................................................................................................................CAGGGCTCCAAGGTGAACAG....................................................................................................................................................2041.750.500.25-----0.25--0.75---0.25------------------------------0.25-
...........................................................................TGGGGTGTGGGTCTGGGGAGAATTCTG......................................................................................................................................................................................2711.001.00---------------------------------1.00------------
...................................................................................................................GCAGGGCTCCAAGGTGAAA......................................................................................................................................................1911.002.00----1.00-----------------------------------------
....................................................................................................................CAGGGCTCCAAGGTGCACA.....................................................................................................................................................191.000.00------1.00---------------------------------------
....................................................................................................................................GTGAGGGGGGTGAGCTCTG.....................................................................................................................................1911.001.00---------------------------------------1.00------
.....................................................................................................................AGGGCTCCAAGGTGAAC......................................................................................................................................................171.000.00-------------------------1.00--------------------
..................................................................................................................................................................................................................CCTGTTGACCTCTTATCCCCACAG..................................................2411.001.00-------------------1.00--------------------------
...................................................................................GGGTCTGGGGAGAATCCT.......................................................................................................................................................................................181.000.00----------------1.00-----------------------------
..................................................................................................................AGCAGGGCTCCAAGGGGAA.......................................................................................................................................................191.000.00--------1.00-------------------------------------
.....................................................................................................................AGGGCTCCAAGGTGAACAG....................................................................................................................................................191.000.00--------1.00-------------------------------------
........................................................................GCATGGGGTGTGGGTCTGGGGAGAATTCTG......................................................................................................................................................................................3011.001.00------------------------------------1.00---------
..................................................................................................................................................................................................................CCTGTTGACCTCTTATCCCCA.....................................................2111.001.00--------------------1.00-------------------------
...............................................................................GTGTGGGTCTGGGGAGGGCG.........................................................................................................................................................................................201.000.00---------------1.00------------------------------
....................................................................................................................CAGGGCTCCAAGGTGAAC......................................................................................................................................................1841.000.500.50-----------------------------------------0.250.25--
...................................................................................................................GCAGGGCTCCAAGGTGAACA.....................................................................................................................................................2011.002.00------1.00---------------------------------------
.......................................................................................................................................................................................TTGGGGAGGAGGCTGGATAG.................................................................................201.000.00--1.00-------------------------------------------
..................................................................................................................AGCAGGGCTCCAAGGTGAAAA.....................................................................................................................................................2111.008.00-1.00--------------------------------------------
..........AACCCCACAGGGCTCCTG................................................................................................................................................................................................................................................................1811.001.00---------------------------1.00------------------
..................................................................................................................AGCAGGGCTCCAAGGGGA........................................................................................................................................................181.000.00-1.00--------------------------------------------
.................................................................................................................AAGCAGGGCTCCAAGGAG.........................................................................................................................................................181.000.00---1.00------------------------------------------
.................................................................................................................AAGCAGGGCTCCAAGGCGAA.......................................................................................................................................................201.000.00-----------------------------------1.00----------
.................................................................................................................................................................................................GGCTGGGTGCCTGGGGCTTC.......................................................................201.000.00---1.00------------------------------------------
..................................................................................................................AGCAGGGCTCCAAGGGG.........................................................................................................................................................171.000.00----1.00-----------------------------------------
..................................................................................................................AGCAGGGCTCCAAGGTGTA.......................................................................................................................................................1920.500.50----0.50-----------------------------------------
..................................................................................................................AGCAGGGCTCCAAGGTG.........................................................................................................................................................1720.500.50----------0.50-----------------------------------
....................................................................................................................CAGGGCTCCAAGGTGA........................................................................................................................................................1640.500.50---------0.25-------------------------------0.25----
.....................................................................................GTCTGGGGAGAATTCTG......................................................................................................................................................................................1740.500.50------------0.25-0.25-------------------------------
........................................................................................................................................GGGGGGTGAGCTCTG.....................................................................................................................................1530.330.33----------------------------------------0.33-----
....................................................................................................................CAGGGCTCCAAGGTGAACA.....................................................................................................................................................1940.250.50---------------------------------------------0.25

Antisense strand
GTGTCTTCCAAACCCCACAGGGCTCCTGCAGCTGCCCCCCTGGCTGGATGGTATGGAGGGTGGGGCCTGTGGGCATGGGGTGTGGGTCTGGGGAGAATTCTGTGGGTGGTGCTAAGCAGGGCTCCAAGGTGAGTGAGGGGGGTGAGCTCTGTGGTTATGGGGGTGTCAAGGGGTCCTGTGGCCTTGGGGAGGAGGCTGGGTGCCTGGGGCCCTGTTGACCTCTTATCCCCACAGGGCACCATCTGCTCCCTGCCCTGCCCAGAGGGCTTTCACGGACCCAACTG
..................................................................................................................(((...(((((.............)))))..)))((((((..(((((((.((((((((((((((.((((((((........))))).)))))))))))).))))))))))))..))))))..................................................
..............................................................................................................111........................................................................................................................234................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR189782SRR040028(GSM532913)
G026N. (cervix)
TAX577738(Rovira)
total RNA. (breast)
SRR189784SRR189785SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR029124(GSM416753)
HeLa. (hela)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR040016(GSM532901)
G645N. (cervix)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR037937(GSM510475)
293cand2. (cell line)
SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
TAX577739(Rovira)
total RNA. (breast)
GSM532890(GSM532890)
G576T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
SRR040025(GSM532910)
G613T. (cervix)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
SRR191416(GSM715526)
34genomic small RNA (size selected RNA from t. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
TAX577579(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
..........................................................................................GGGAGAATTCTGTGGTTTG............................................................................................................................................................................... 194.000.00--2.00--2.00----------------------------------------
.......................TCCTGCAGCTGCCCCCCTACCT............................................................................................................................................................................................................................................... 222.000.00-------2.00--------------------------------------
................................................................................................................CTTGGAGCCCTGCTTA............................................................................................................................................................ 1621.501.50-----------1.50----------------------------------
...................................................................................................CTGTGGGTGGTGCTACTTG...................................................................................................................................................................... 191.000.00-----1.00----------------------------------------
.................................................................................................................................................................................................GGCTGGGTGCCTGGGGCC......................................................................... 181.000.00---------------------1.00------------------------
.......CCAAACCCCACAGGGCTCC.................................................................................................................................................................................................................................................................. 191.000.00----------------------------------1.00-----------
......................................................................................................................................................................................................................................................TCCCTGCCCTGCCCAGCAAA.................. 201.000.00--------------------------------------1.00-------
..........................................................................................GGGAGAATTCTGTGGTTGG............................................................................................................................................................................... 191.000.00--1.00-------------------------------------------
...........................................................................................................................................................................................................................................TCTGGGCAGGGCAGGGAGCAGATGGTGC..................... 2811.001.00------------1.00---------------------------------
..........................................................................................GGGAGAATTCTGTGGTCCC............................................................................................................................................................................... 191.000.00--1.00-------------------------------------------