ID: uc009wlp.2_intron_10_0_chr1_150315929_f.3p
GENE: PRPF3(11)
chr1:150316438-150316687+


(2)
AGO2.ip
(4)
B-CELL
(1)
BRAIN
(7)
BREAST
(22)
CELL-LINE
(2)
CERVIX
(2)
HEART
(2)
HELA
(2)
LIVER
(4)
OTHER
(9)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
TCTTCAACTTAATTGTGTGAACTTCTGCAAATGCTGAAGTGATTGGATGGGATTTTCAAGATAGGAGTTATTGGAGGAAGTGAGTTTAGAGCAGAGATTTGAAATAGGTAAATAATATGAATTGGTATGGAAGAAATAACAAGTTACTCCAGCTGGAGAAGTGACTTCAAAGACTGATTGTTGTCCTCTCTTCACTGCAGTGAGAATTTCTAATTTGATGCGAGTATTAGGAACAGAAGCTGTTCAAGAC
..................................................................................................................................................((.(((.((((((((.(((..(((.......)))..))))).))))))))).))..................................................
..............................................................................................................................................143......................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189782SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
GSM359175(GSM359175)
hela_5_pct. (hela)
SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR191442(GSM715552)
107genomic small RNA (size selected RNA from . (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577579(Rovira)
total RNA. (breast)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR191486(GSM715596)
125genomic small RNA (size selected RNA from . (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
....................................................................................................................................................................................TTGTCCTCTCTTCACTGCAGT.................................................21133.0033.00--8.00---5.00---2.003.003.00--1.002.002.00-----1.00--1.00-1.00----1.00-----1.00-----1.00----1.00------
...................................................................................................................................................TCCAGCTGGAGAAGTGACTTCAA................................................................................23116.0016.009.00----6.00----------------1.00----------------------------------
...................................................................................................................................................TCCAGCTGGAGAAGTGACTTCA.................................................................................22111.0011.00---1.007.00---1.00----------------1.00---------------------1.00---------
...................................................................................................................................................TCCAGCTGGAGAAGTGACT....................................................................................1919.009.00-9.00-------------------------------------------------------
...............................................................................................................................................................................GATTGTTGTCCTCTCTTCACTGCA...................................................2416.006.00---6.00-----------------------------------------------------
....................................................................................................................................................................................TTGTCCTCTCTTCACTGCAG..................................................2013.003.00---------------1.00------------------------1.00--------1.00-------
.............................................................................................GAGATTTGAAATAGGTAAATAATATGA..................................................................................................................................2712.002.00------------------------------------1.00-----1.00--------------
..............................................................AGGAGTTATTGGAGGAAGTGAG......................................................................................................................................................................2212.002.00-------2.00-------------------------------------------------
....................................................................................................................................................................................TTGTCCTCTCTTCACTGCAGTAT...............................................2311.0033.00-------------------------------------------1.00-------------
....................................................................................................................................................................................TTGTCCTCTCTTCACTGCAGTAG...............................................2311.0033.00---------------------1.00-----------------------------------
....................................................................................................................................................................................TTGTCCTCTCTTCACTGCAGA.................................................2111.003.00---------------------------1.00-----------------------------
................................................................................TGAGTTTAGAGCAGACTG........................................................................................................................................................181.000.00--------1.00------------------------------------------------
...............................................................................................................................................................................GATTGTTGTCCTCTCTTCACTGCAG..................................................2511.001.00--------------------------------------1.00------------------
.......................................................................................................................AATTGGTATGGAAGAAATAACAAGTT.........................................................................................................2611.001.00-----------------------------1.00---------------------------
..................................................................................................TTGAAATAGGTAAATCTTG.....................................................................................................................................191.000.00------------------1.00--------------------------------------
..........................................................................................................................TGGTATGGAAGAAATAGT..............................................................................................................181.000.00---------------------------------------------------1.00-----
...................................................................................................................................................TCCAGCTGGAGAAGTGACTT...................................................................................2011.001.00--------------------------------------------1.00------------
......................................................................................................................................................................................................AGTGAGAATTTCTAATTTGATGCGAGT.........................2721.001.00-------1.00-------------------------------------------------
...................................................................................................................................................TCCAGCTGGAGAAGTGACTTCG.................................................................................221.000.00-----------------------------------1.00---------------------
....................................................................................................................................................................................TTGTCCTCTCTTCACTGCA...................................................1911.001.00----------------------------------------------1.00----------
.........................................................................................................................................................................AAGACTGATTGTTGTCCTCTCT...........................................................2211.001.00------------------------------1.00--------------------------
..............................................................................................................AATAATATGAATTGGTATGGAAGAAATAAA..............................................................................................................301.000.00--------------------1.00------------------------------------
...................................................................................................................................................................................................................AATTTGATGCGAGTATTAGGAACAGA.............2621.001.00-------1.00-------------------------------------------------
...................................................................................................................................................TCCAGCTGGAGAAGTGACCTCA.................................................................................221.000.00--------------1.00------------------------------------------
....................................................................................................................................................................................TTGTCCTCTCTTCACTGCAGTA................................................2211.0033.00-------------------------------------1.00-------------------
....................................................................................................................................................................................................................................AGGAACAGAAGCTGTCCGA...191.000.00-----------------------------------------1.00---------------
..............................................................................................................................................................................TGATTGTTGTCCTCTCTTCACTGCAGA.................................................271.000.00------------------------1.00--------------------------------
..................................TGAAGTGATTGGATGGGATTTTCAAG..............................................................................................................................................................................................2611.001.00-------------1.00-------------------------------------------
.............................AATGCTGAAGTGATTGGATGGGATTTTC.................................................................................................................................................................................................2811.001.00----------------------------------1.00----------------------
.........................................................................................................................................................................................................................................CAGAAGCTGTTCAAGTTT181.000.00--------1.00------------------------------------------------
....................................................................................................................................................................................TTGTCCTCTCTTCACTGCAGTTT...............................................2311.0033.00-------------------------------1.00-------------------------
....................................................................................................................................................................................TTGTCCTCTCTTCACTGCAGTAA...............................................2311.0033.00----------1.00----------------------------------------------
............................................GGATGGGATTTTCAAGATAGGAGTTATTGGA...............................................................................................................................................................................3111.001.00-------------1.00-------------------------------------------
.....................................................................................................................................................CAGCTGGAGAAGTGACGATA.................................................................................201.000.00------------------------------------------------1.00--------
...................................................................................................................................................TCCAGCTGGAGAAGTGACTCCA.................................................................................2211.009.00--------------1.00------------------------------------------
.............................................................................................................................................................................................................ATTTCTAATTTGATGCGAGTATTAGG...................2620.500.50-------0.50-------------------------------------------------
.............................................................................................................................................................................................................ATTTCTAATTTGATGCGAGTATT......................2320.500.50------------------0.50--------------------------------------
...............................................................................................................................................................................................................................GTATTAGGAACAGAAGCTGTTCAA...2420.500.50------------------------------------------------------0.50--
...................................................................................................................................................................................................................AATTTGATGCGAGTATTAGGAAC................2320.500.50-------------------0.50-------------------------------------
..........................................................................................................................................................................................................AGAATTTCTAATTTGATGCGAGTATTAG....................2820.500.50----------------------------------------------------0.50----
........................................................................................................................................................................................................................GATGCGAGTATTAGGAACAGAAGCTGTT......2820.500.50-------------------------------------------------------0.50-
...............................................................................................................................................................................................................................GTATTAGGAACAGAAGCTGT.......2020.500.50--------------------0.50------------------------------------
.....................................................................................................................................................................................................................TTTGATGCGAGTATTAGGAACAGAAGC..........2720.500.50-----------------------------------------------------0.50---
...................................................................................................................................................TCCAGCTGGAGAAGTGA......................................................................................1730.330.33--------------------------------------------------------0.33
....................................................................................................................................................................................TTGTCCTCTCTTCACT......................................................1670.140.14--------0.14------------------------------------------------

Antisense strand
TCTTCAACTTAATTGTGTGAACTTCTGCAAATGCTGAAGTGATTGGATGGGATTTTCAAGATAGGAGTTATTGGAGGAAGTGAGTTTAGAGCAGAGATTTGAAATAGGTAAATAATATGAATTGGTATGGAAGAAATAACAAGTTACTCCAGCTGGAGAAGTGACTTCAAAGACTGATTGTTGTCCTCTCTTCACTGCAGTGAGAATTTCTAATTTGATGCGAGTATTAGGAACAGAAGCTGTTCAAGAC
..................................................................................................................................................((.(((.((((((((.(((..(((.......)))..))))).))))))))).))..................................................
..............................................................................................................................................143......................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189782SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
GSM359175(GSM359175)
hela_5_pct. (hela)
SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR191442(GSM715552)
107genomic small RNA (size selected RNA from . (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577579(Rovira)
total RNA. (breast)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR191486(GSM715596)
125genomic small RNA (size selected RNA from . (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
..............................................................................................................................................................................TGATTGTTGTCCTCTAAC.......................................................... 184.000.00---------4.00-----------------------------------------------
.....................................................................ATTGGAGGAAGTGAGTTTCT................................................................................................................................................................. 201.000.00--------------------------------1.00------------------------
........................................................................................................................................................................................................................................ACAGAAGCTGTTCAAGTGC 191.000.00-------------------1.00-------------------------------------
......................................................................................................AATAGGTAAATAATATAG.................................................................................................................................. 181.000.00--------1.00------------------------------------------------