ID: uc009whg.1_intron_3_0_chr1_117984948_f.3p
GENE: MAN1A2(4)
chr1:118002911-118003160+


(7)
B-CELL 		(1)
BRAIN 		(4)
BREAST 		(23)
CELL-LINE 		(8)
CERVIX 		(2)
HEART 		(1)
HELA 		(4)
LIVER 		(1)
OTHER 		(10)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
ATTTAAAAACTACTGTTTTAATTTTTAGAACATGGATTTATTACCTATTTAAATTTTTAATACAATTTTAGATATAAATAAGCTATCGTGTCAGATATAATAATTTATAAGAGATCTATTTAAAATTTACATATTCATTAAACGAATGTTTTGGTCTTTTCCCAATCCTGTGTCTCCTTTTACTTTTCCTTTTCATTCAGTGGAGTAGGGCGAAACTGGGGCTGGGCATCTGCAGGTAGCAGCATTCTGG
........................................................................(((((((....((((......)))).....))))))).............................................................................................................................................
......................................................................71.................................................................138..............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040042(GSM532927)
G428N. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR040040(GSM532925)
G612N. (cervix)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040028(GSM532913)
G026N. (cervix)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR040036(GSM532921)
G243N. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782SRR040031(GSM532916)
G013T. (cervix)		TAX577739(Rovira)
total RNA. (breast)		SRR040039(GSM532924)
G531T. (cervix)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR038859(GSM458542)
MM386. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR040043(GSM532928)
G428T. (cervix)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...........................................................................AAATAAGCTATCGTGCCCA............................................................................................................................................................1926.000.005.00---3.002.00-1.00--1.00-----2.00-1.00---------1.001.001.00-1.00---1.00-1.00----1.001.00---1.00--1.00-1.00----------
...........................................................................AAATAAGCTATCGTGCCC.............................................................................................................................................................187.000.002.00----1.00---1.00--2.00----------1.00----------------------------------------
..........................................................................TAAATAAGCTATCGTGCCCA............................................................................................................................................................203.000.00--------------2.00------------------1.00------------------------------
..........................................................................TAAATAAGCTATCGTGCC..............................................................................................................................................................183.000.00-------2.00-------1.00------------------------------------------------
......................................................................................................................................................................................................AGTGGAGTAGGGCGAAAC..................................1812.002.00--2.00-------------------------------------------------------------
....................................................................................................................................................................................................................................TCTGCAGGTAGCAGCATTCT..2012.002.00---2.00------------------------------------------------------------
............................................................................AATAAGCTATCGTGTC..............................................................................................................................................................1612.002.00-----------2.00----------------------------------------------------
.........................................................................ATAAATAAGCTATCGGGCC..............................................................................................................................................................192.000.00---------------------1.00---------1.00--------------------------------
.......................................................................................................................................................................................................GTGGAGTAGGGCGAAAAAA................................192.000.00-------------2.00--------------------------------------------------
...........................................................................AAATAAGCTATCGTGAAC.............................................................................................................................................................181.000.00---------------1.00------------------------------------------------
....................................................................................................................................................................................................................AAACTGGGGCTGGGCATCT...................1911.001.00--1.00-------------------------------------------------------------
...........................................................................................................................................................................................................AGTAGGGCGAAACTGGGGCTGG.........................2211.001.00-------------------------------------------------------1.00--------
......................................................................................................................................................................................................................ACTGGGGCTGGGCATCTGCGGA..............221.000.00----1.00-----------------------------------------------------------
.......................................................................................................................................................................................................................CTGGGGCTGGGCATCTGCAGGTAGCAGC.......2811.001.00-1.00--------------------------------------------------------------
........................................................................................................................................................................................................................TGGGGCTGGGCATCTGCAGGTAGCAGCATT....3011.001.00--------------------------------------------------1.00-------------
....................................................................................................................................................................................................................AAACTGGGGCTGGGCATCTGCAGGT.............2511.001.00--------1.00-------------------------------------------------------
..........................................................................TAAATAAGCTATCGTGTCC.............................................................................................................................................................191.000.00-----------------------------------------------------------1.00----
...........................................................................AAATAAGCTATCGTGCAT.............................................................................................................................................................181.000.00-------------------1.00--------------------------------------------
.........................................................................ATAAATAAGCTATCGGGC...............................................................................................................................................................181.000.00-------------------------------------1.00--------------------------
.............................................................................................................................................................................................................TAGGGCGAAACTGGGGCTGT.........................201.000.00--------1.00-------------------------------------------------------
................................................................ATTTTAGATATAAATAAGCTATCGTG................................................................................................................................................................2611.001.00----------------------------------------1.00-----------------------
.........................................................................ATAAATAAGCTATCGG.................................................................................................................................................................161.000.00--------------------------------------------------------1.00-------
..................................................................................................................TCTATTTAAAATTTACCACC....................................................................................................................201.000.00---------------------------------------------------------1.00------
...........................................................................AAATAAGCTATCGTGCGT.............................................................................................................................................................181.000.00---------1.00------------------------------------------------------
...........................................................................AAATAAGCTATCGTGTCC.............................................................................................................................................................181.000.00-----------------------------------1.00----------------------------
......................................................................................................................................................................................................AGTGGAGTAGGGCGAAACT.................................1911.001.00--1.00-------------------------------------------------------------
....................................................................................................................................................................................................................AAACTGGGGCTGGGCATCTGCAGGTAG...........2711.001.00---1.00------------------------------------------------------------
..................................................................................................................................................................................................................CGAAACTGGGGCTGGGCA......................1811.001.00--------1.00-------------------------------------------------------
...............................................................................................................................................................................................................GGGCGAAACTGGGGCTGGGCAT.....................2211.001.00---------------------------------------1.00------------------------
..........................................................................TAAATAAGCTATCGTGCCAA............................................................................................................................................................201.000.00------1.00---------------------------------------------------------
..........................................................................TAAATAAGCTATCGTGG...............................................................................................................................................................171.000.00-------------------------------------------------1.00--------------
..........................................................................TAAATAAGCTATCGTGCCC.............................................................................................................................................................191.000.00--1.00-------------------------------------------------------------
............................AACATGGATTTATTACCA............................................................................................................................................................................................................181.000.00---1.00------------------------------------------------------------
...........................................................................AAATAAGCTATCGTGTCCA............................................................................................................................................................191.000.00----------------------------------------------1.00-----------------
.......................................................................................................................................................................................................................CTGGGGCTGGGCATCTGCAGGT.............2211.001.00------------------1.00---------------------------------------------
.....................................................................................................................................................................................................................AACTGGGGCTGGGCATCTGCAGGC.............241.000.00-1.00--------------------------------------------------------------
...........................................................................AAATAAGCTATCGTGCAA.............................................................................................................................................................181.000.00------------------------------------------1.00---------------------
...........................................................................AAATAAGCTATCGTGCCTA............................................................................................................................................................191.000.00-----------------1.00----------------------------------------------
...........................................................................AAATAAGCTATCGTGTACCT...........................................................................................................................................................201.000.00-----------------1.00----------------------------------------------
............................................................................................................................................................................TCTCCTTTTACTTTTCCTTTTCATTCAG..................................................2811.001.00-------------------------1.00--------------------------------------
.......................................................................................................................................................................................................................................GCAGGTAGCAGCATTCTGG1911.001.00----------1.00-----------------------------------------------------
.............................................................................................................................................................................................TTTTCATTCAGTGGAGTAGG.........................................2011.001.00----------------------1.00-----------------------------------------
........................................................................................................................................................................................................................TGGGGCTGGGCATCTGCAGGT.............2111.001.00--------------------------1.00-------------------------------------
.........................................................................ATAAATAAGCTATCGAAA...............................................................................................................................................................181.000.00------1.00---------------------------------------------------------
..........................................................................TAAATAAGCTATCGTTCT..............................................................................................................................................................181.000.00----------------------------------------------------1.00-----------
................................TGGATTTATTACCTATTTAAA.....................................................................................................................................................................................................2111.001.00----------------------------------------------------------1.00-----
....................................................................................................................................................................................................................AAACTGGGGCTGGGCATC....................1811.001.00---1.00------------------------------------------------------------
..........................................................................TAAATAAGCTATCGTACC..............................................................................................................................................................181.000.00---------------------------------------------1.00------------------
......................................................................................................................................................................................................................ACTGGGGCTGGGCATCTGCAGGCAGT..........261.000.00-1.00--------------------------------------------------------------
..........................................................................TAAATAAGCTATCGTC................................................................................................................................................................161.000.00------------------------------------------------------1.00---------
................................................................................................................................................................................................................GGCGAAACTGGGGCTGGGCATC....................2211.001.00---------------------------1.00------------------------------------
..........................................................................TAAATAAGCTATCGTAAAC.............................................................................................................................................................191.000.00-----------------------------------------------1.00----------------
.......................................................................................................................................................................................................GTGGAGTAGGGCGAA....................................1511.001.00------------------------1.00---------------------------------------
.....................................................................................................................................................................................................................AACTGGGGCTGGGCATCTGCAGGTAGCAGCAC.....321.000.00-1.00--------------------------------------------------------------
......................................................................................................................................................................................................................ACTGGGGCTGGGCATGAG..................181.000.00-1.00--------------------------------------------------------------
...............................................................................................................................................................................CCTTTTACTTTTCCTTT..........................................................1720.500.50-------------------------------------------------------------0.50--
...............................................................................................................................................................................................TTCATTCAGTGGAGTAG..........................................1720.500.50------------------------------------------------------------0.50---
...................................................................................................................................................................................................................GAAACTGGGGCTGGGCAT.....................1840.250.25--------------------------------------------------------------0.25-
................................................................................................................................................................................CTTTTACTTTTCCTTTT.........................................................1790.110.11---------------------------------------------------------------0.11

Antisense strand
ATTTAAAAACTACTGTTTTAATTTTTAGAACATGGATTTATTACCTATTTAAATTTTTAATACAATTTTAGATATAAATAAGCTATCGTGTCAGATATAATAATTTATAAGAGATCTATTTAAAATTTACATATTCATTAAACGAATGTTTTGGTCTTTTCCCAATCCTGTGTCTCCTTTTACTTTTCCTTTTCATTCAGTGGAGTAGGGCGAAACTGGGGCTGGGCATCTGCAGGTAGCAGCATTCTGG
........................................................................(((((((....((((......)))).....))))))).............................................................................................................................................
......................................................................71.................................................................138..............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040042(GSM532927)
G428N. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR040040(GSM532925)
G612N. (cervix)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040028(GSM532913)
G026N. (cervix)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR040036(GSM532921)
G243N. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782SRR040031(GSM532916)
G013T. (cervix)		TAX577739(Rovira)
total RNA. (breast)		SRR040039(GSM532924)
G531T. (cervix)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR038859(GSM458542)
MM386. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR040043(GSM532928)
G428T. (cervix)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
....AAAAACTACTGTTTTATTG................................................................................................................................................................................................................................... 191.000.00----------------------------------1.00-----------------------------
.................................................................................................................................................................................................................ATGCCCAGCCCCAGTTTCGC..................... 2011.001.00--------------------1.00-------------------------------------------
..................................................................................................................................................................................................................TGCCCAGCCCCAGTTTCG...................... 1811.001.00-----------------------------------------1.00----------------------
........................................................................................................................................................................................................................................CAGGTAGCAGCATTCTACT 191.000.00------1.00---------------------------------------------------------