ID: uc009wgk.1_intron_4_0_chr1_113248875_r.3p
GENE: RHOC(1)
chr1:113248825-113249074-


(1)
AGO2.ip
(3)
BRAIN
(3)
BREAST
(17)
CELL-LINE
(1)
CERVIX
(3)
HEART
(2)
HELA
(1)
LIVER
(2)
OTHER
(62)
SKIN
(1)
TESTES

Sense strand
GTGTGTGTGTGTGTGTGTGTGTAGAGAGAGAGAGAGAGAGAGAAAATGAGATTGAGAATCCTCCTTCTTCATACTCGAACCAAGAAAGAGTATCCTGGGGTTTGGGACTGGGATCCCGAGGCCGAGTCCCGCCCTCACTCTGGTTTTAAAGTTGAGAATGCAGTATCTCTTGGTATCTCCAGAACGGATTCCTTCCCTAGGTGTAGGGTGGGCCGGCAAAGTCAACCGGCCGCTCTGGATCATCTGGGAA
.......................................................................................................((((((.((.((....)))).))))))...((((..((........)).))))..............................................................................................
.......................................................................................................104.................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR343337SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343335SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM532876(GSM532876)
G547T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343336GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191634(GSM715744)
98genomic small RNA (size selected RNA from t. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038862(GSM458545)
MM472. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
............................................................................................................TGGGATCCCGAGGCC...............................................................................................................................153140.00140.0029.33-5.335.004.674.674.333.673.673.333.003.003.003.002.002.672.672.672.672.332.332.330.672.332.002.002.002.002.000.67-1.331.000.331.001.001.001.001.001.000.67------1.00---1.001.001.000.67-1.00-----0.670.670.670.670.670.670.670.670.670.670.33-0.330.330.330.330.330.330.330.330.330.330.330.330.330.330.330.330.330.330.330.330.330.330.330.330.330.33
....................GTAGAGAGAGAGAGAGGATC..................................................................................................................................................................................................................2019.000.00-19.00--------------------------------------------------------------------------------------------------
............................................AATGAGATTGAGAATC..............................................................................................................................................................................................1645.255.25-5.25--------------------------------------------------------------------------------------------------
............................................................................................................TGGGATCCCGAGGCCC..............................................................................................................................1631.67140.00----------------------1.33-----------------0.33-----------------------------------------------------------
............................................................................................................TGGGATCCCGAGGCCA..............................................................................................................................1631.00140.00----------------------0.33---------0.33---------------------0.33---------------------------------------------
...................................................................................................................................................AAAGTTGAGAATGCAGTGAGA..................................................................................211.000.00---------------------------------1.00------------------------------------------------------------------
....................................................................................................................................................................................................CTAGGTGTAGGGTGGGAAAG..................................201.000.00-------------------------------------------1.00--------------------------------------------------------
............................................................................................................TGGGATCCCGAGGCCGAGG...........................................................................................................................191.000.00--------------------------------------------------1.00-------------------------------------------------
.............................................................................................................GGGATCCCGAGGCCGCT............................................................................................................................171.000.00------------------------------1.00---------------------------------------------------------------------
.............................................................................................................GGGATCCCGAGGCCGCTC...........................................................................................................................181.000.00----------------------------------------------1.00-----------------------------------------------------
........................................................................................................................................................................................................GTGTAGGGTGGGCCGGCAAAGTCA..........................2411.001.00-------------------------------------------------------1.00--------------------------------------------
...........................................................................................................CTGGGATCCCGAGGCC...............................................................................................................................1621.001.00---------------------------------------------1.00------------------------------------------------------
................................................................................................................................................................................................TTCCCTAGGTGTAGGGTGGGCCAT..................................241.000.00-------------------------------------------------1.00--------------------------------------------------
.....................................................................................................................................................................................................TAGGTGTAGGGTGGGCCGTCA................................211.000.00-----------------------------1.00----------------------------------------------------------------------
................................................................................CAAGAAAGAGTATCCTGGGGTT....................................................................................................................................................2211.001.00--1.00-------------------------------------------------------------------------------------------------
............................................................................................................TGGGATCCCGAGGCCGCTCC..........................................................................................................................201.000.00---------------------------------------------------------1.00------------------------------------------
........................................................................................................................................................................................................GTGTAGGGTGGGCCGGCAAAGT............................2211.001.00-------------------------------------------------------------1.00--------------------------------------
...........................................................................................................CTGGGATCCCGAGGC................................................................................................................................1550.400.40----------0.20-------------------------------------------------------------0.20---------------------------
............................................................................................................TGGGATCCCGAGGCCCC.............................................................................................................................1730.33140.00----0.33-----------------------------------------------------------------------------------------------
............................................................................................................TGGGATCCCGAGGCCCCT............................................................................................................................1830.33140.00-------0.33--------------------------------------------------------------------------------------------
............................................................................................................TGGGATCCCGAGGCCAC.............................................................................................................................1730.33140.000.33---------------------------------------------------------------------------------------------------
............................................................................................................TGGGATCCCGAGGCCCCTC...........................................................................................................................1930.33140.000.33---------------------------------------------------------------------------------------------------
............................................................................................................TGGGATCCCGAGGCCACTC...........................................................................................................................1930.33140.000.33---------------------------------------------------------------------------------------------------
............................................................................................................TGGGATCCCGAGGCCCA.............................................................................................................................1730.33140.00------------------------------0.33---------------------------------------------------------------------

Antisense strand
GTGTGTGTGTGTGTGTGTGTGTAGAGAGAGAGAGAGAGAGAGAAAATGAGATTGAGAATCCTCCTTCTTCATACTCGAACCAAGAAAGAGTATCCTGGGGTTTGGGACTGGGATCCCGAGGCCGAGTCCCGCCCTCACTCTGGTTTTAAAGTTGAGAATGCAGTATCTCTTGGTATCTCCAGAACGGATTCCTTCCCTAGGTGTAGGGTGGGCCGGCAAAGTCAACCGGCCGCTCTGGATCATCTGGGAA
.......................................................................................................((((((.((.((....)))).))))))...((((..((........)).))))..............................................................................................
.......................................................................................................104.................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR343337SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343335SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM532876(GSM532876)
G547T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343336GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191634(GSM715744)
98genomic small RNA (size selected RNA from t. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038862(GSM458545)
MM472. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
........GTGTGTGTGTGTGTAGACAG.............................................................................................................................................................................................................................. 201.000.00----------------------------------------------------------1.00-----------------------------------------
...........................................................................CGAACCAAGAAAGAGGTG............................................................................................................................................................. 181.000.00-----------------------------------------1.00----------------------------------------------------------
....GTGTGTGTGTGTGTGTGTAGAGTCT............................................................................................................................................................................................................................. 251.000.00------------------------------------------1.00---------------------------------------------------------
............................................................................GAACCAAGAAAGAGTATGG........................................................................................................................................................... 191.000.00------------------------------------------------1.00---------------------------------------------------
................................................................................................................................................................................................................................TTCCCAGATGATCCAGAGCGGCCGGT 2611.001.00--------------------------------------------1.00-------------------------------------------------------
...........................................................................CGAACCAAGAAAGAGTTG............................................................................................................................................................. 181.000.00-----------------------------------------------------------1.00----------------------------------------
................GTGTGTAGAGAGAGACGCC....................................................................................................................................................................................................................... 191.000.00--------------1.00-------------------------------------------------------------------------------------
................................AGAGAGAGAGAAAATGATG....................................................................................................................................................................................................... 191.000.00------------------------------------------------------------1.00---------------------------------------
......................................................ATGAAGAAGGAGGATTCT.................................................................................................................................................................................. 1820.500.50-------------------------------------------------------------------------0.50--------------------------