ID: uc009wce.1_intron_0_0_chr1_82436219_f.3p
GENE: LPHN2(1)
chr1:82437336-82437585+


(1)
AGO1.ip 		(1)
AGO2.ip 		(3)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(13)
CELL-LINE 		(2)
HEART 		(1)
HELA 		(3)
LIVER 		(2)
OTHER 		(15)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CAGTTTGAAGTAAATAAATTATTTTCCTTTGTTAAGTCAAAGCCAACTCAGAATTATTAGAGGTCTTGCACATGATAAATGAATCTTCAAAGGCAAATGTAAAGATAGTTTTGTCTGTTAGGTTTTTAAAATCCTATTTTCCTTGTGATGTTGAGGTTCCATAGAAACTACTAATGCATATTCTTCTCTTTTCATAATAGTTGCTGGCTTCATGTTGATAACTACTTTATATGGAGCTTCATTGGACCTG
........................................................((((((..((...(((.((((((...(((((.....((....)).)))))...))))))))).))..)))))).........................................................................................................................
..................................................51...............................................................................132....................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191534(GSM715644)
153genomic small RNA (size selected RNA from . (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)
.....................................................TTATTAGAGGTCTTGGGGC..................................................................................................................................................................................1915.000.00-4.001.00-3.00--1.001.00----1.00-----1.00-1.00------1.001.00----------------
...................................................AATTATTAGAGGTCTTGGGGC..................................................................................................................................................................................21212.501.505.002.50-0.50---0.500.50---------1.00-------1.00---------------0.50-0.500.50
..................................................GAATTATTAGAGGTCTTGGGGC..................................................................................................................................................................................22110.003.003.00-----2.00---------1.001.00-----1.001.00-----1.00---------------
...................................................AATTATTAGAGGTCTTGGGG...................................................................................................................................................................................2025.001.500.501.00-0.50-0.50----------------------------0.50--0.500.500.50-0.50----
..................................................GAATTATTAGAGGTCTTGTGGC..................................................................................................................................................................................2214.003.004.00---------------------------------------------
....................................................ATTATTAGAGGTCTTGGGGC..................................................................................................................................................................................203.000.001.00--------------1.00-----------1.00------------------
..................................................GAATTATTAGAGGTCTTGGGG...................................................................................................................................................................................2113.003.00---2.00-----1.00------------------------------------
..................................................GAATTATTAGAGGTCTTG......................................................................................................................................................................................1813.003.00--2.00-------------------1.00-----------------------
..................................................GAATTATTAGAGGTCTTGG.....................................................................................................................................................................................1913.003.00-----1.00-----1.00--------1.00-------------------------
...................................................AATTATTAGAGGTCTTGGGTC..................................................................................................................................................................................2122.501.502.50---------------------------------------------
...................................................AATTATTAGAGGTCTTGTGGC..................................................................................................................................................................................2122.001.502.00---------------------------------------------
...................................................AATTATTAGAGGTCTTG......................................................................................................................................................................................1721.501.50-----------------------------------0.500.50---0.50-----
...................................................................................................................................................................................................................ATGTTGATAACTACTTTATATGGAGC.............2611.001.00----------1.00-----------------------------------
.....................................................TTATTAGAGGTCTTGGGG...................................................................................................................................................................................181.000.00--------------1.00-------------------------------
.................................................................................................................................................................................................ATAATAGTTGCTGGCTTCATGTTG.................................2411.001.00-----1.00----------------------------------------
...................................................AATTATTAGAGGTCTTGGTGC..................................................................................................................................................................................2121.001.501.00---------------------------------------------
....................................................................CACATGATAAATGAACCG....................................................................................................................................................................181.000.00------------1.00---------------------------------
..................................................GAATTATTAGAGGTCTTGGCGC..................................................................................................................................................................................2211.003.001.00---------------------------------------------
...............................................................................................................TGTCTGTTAGGTTTTTGGTT.......................................................................................................................201.000.00-------------------------1.00--------------------
..................................................GAATTATTAGAGGTCTTGGTGC..................................................................................................................................................................................2211.003.001.00---------------------------------------------
...................................................AATTATTAGAGGTCTTGTTG...................................................................................................................................................................................2020.501.50-------------------------------------------0.50--
......................................................................................................................................................................................CTTCTCTTTTCATAATAG..................................................1820.500.50---------------------------------0.50------------
...................................................AATTATTAGAGGTCTTGGTG...................................................................................................................................................................................2020.501.500.50---------------------------------------------
...................................................AATTATTAGAGGTCTTGTTGC..................................................................................................................................................................................2120.501.500.50---------------------------------------------
...................................................AATTATTAGAGGTCTT.......................................................................................................................................................................................1630.330.33-0.33--------------------------------------------
.......................................................................................................................................................................................................................................TGGAGCTTCATTGGA....1540.250.25--0.25-------------------------------------------

Antisense strand
CAGTTTGAAGTAAATAAATTATTTTCCTTTGTTAAGTCAAAGCCAACTCAGAATTATTAGAGGTCTTGCACATGATAAATGAATCTTCAAAGGCAAATGTAAAGATAGTTTTGTCTGTTAGGTTTTTAAAATCCTATTTTCCTTGTGATGTTGAGGTTCCATAGAAACTACTAATGCATATTCTTCTCTTTTCATAATAGTTGCTGGCTTCATGTTGATAACTACTTTATATGGAGCTTCATTGGACCTG
........................................................((((((..((...(((.((((((...(((((.....((....)).)))))...))))))))).))..)))))).........................................................................................................................
..................................................51...............................................................................132....................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191534(GSM715644)
153genomic small RNA (size selected RNA from . (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)
.....TGAAGTAAATAAATTTTCG.................................................................................................................................................................................................................................. 191.000.00-------------------------------1.00--------------
.....................................................................................................................................................................TATGCATTAGTAGTT...................................................................... 1530.670.67--------------------------------0.67-------------