ID: uc009waa.1_intron_3_0_chr1_59131304_r.5p
GENE: (3)
chr1:59132510-59132759-


(1)
BRAIN
(8)
CELL-LINE
(2)
LIVER
(1)
OTHER
(1)
SKIN

Sense strand
TTGATCCTAATCCTTCCTTACGAGATATTGACACACAAGCTAAATACCAGGTATTACATGTATATTTATATTCTGTAAATGGTTGCACACCCCCTCAATGCTCCCTTTTAAATAGATAAACTTTAAACATTTTTCATATTACATTTCTAATATTCTTTATACTGGGGATTTTGTTTGTTTATTTTTATTTATTTTTATTATTATTTTTTTTTTGAGACAGAGTTTCGCTCTTGTTGCCCAAGCTGGAGTG
................................................................................((..(((...........)))..))....(((((((((((...((((((.....((......((..(((.(((.....))).)))..))..))..))))))..)))))))))))........................................................
............................................................................77................................................................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189784SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
......................................................................................................................................................................................TTTTATTTATTTTTATTATAG...............................................21106.000.0036.0033.0022.0015.00---------
...........................................................................................................................................................................................TTTATTTTTATTATTATTTTCAG........................................233.000.001.002.00-----------
.......................................................................................................................................................................................TTTATTTATTTTTATTATTATTTTTTTTTAG....................................313.000.001.002.00-----------
......................................................................................................................................................................................TTTTATTTATTTTTATTACAG...............................................212.000.00--1.001.00---------
......................................................................................................................................................................................TTTTATTTATTTTTATTATTATTTTTTTTTAG....................................322.000.00-2.00-----------
..............................................................................................................................................................ATACTGGGGATTTTGTTTGTTTATTTC.................................................................272.000.00----1.001.00-------
...............................................................................................................................................................................................TTTTTATTATTATTTTTTTAATG....................................232.000.001.00---1.00--------
................................................................................................................................................................................GTTTATTTTTATTTATTTTTATC...................................................232.000.00-----2.00-------
...............................................................................................................................................................................................TTTTTATTATTATTTTTTTTTCTAG..................................252.000.002.00------------
................................................................................................................................................................ACTGGGGATTTTGTTGAA........................................................................181.000.00------1.00------
................................................................................................................................................................ACTGGGGATTTTGTTTGTTTAT....................................................................2211.001.00----1.00--------
............................................................................................................................................................................................TTATTTTTATTATTATTTTTTTTCAAG...................................271.000.00-1.00-----------
......................................................................................................................................................................................TTTTATTTATTTTTATTATTATTTTTTTTTATT...................................331.000.00-1.00-----------
..............................................................................................................................................................ATACTGGGGATTTTGTTTGTTTATTC..................................................................261.000.00-----1.00-------
..............................................................................................................................................................................................ATTTTTATTATTATTTTTTTTTTTTAT.................................271.000.001.00------------
...............................................................................................................................................................................................TTTTTATTATTATTTTTTTTTCAG...................................241.000.00---1.00---------
..............................................................................................................................................................ATACTGGGGATTTTGTTTGTTTATTTTTATTC............................................................321.000.00----1.00--------
...........................................................................................................................................................................................TTTATTTTTATTATTATTTTTTTCAT.....................................261.000.001.00------------
..............................................................................................................................................................ATACTGGGGATTTTGTTTGTTTATTTTT................................................................2811.001.00----1.00--------
................................................................................................................................................................ACTGGGGATTTTGTTTGTTTATTTTTACTT............................................................301.000.00----1.00--------
................................................................................................................................................................ACTGGGGATTTTGTTTGTTTATTTTTATTC............................................................301.000.00----1.00--------
.............................................................................................................................................................................................................................GTTTCGCTCTTGTTGCCGAGT........211.000.00----------1.00--
.................................................................................GTTGCACACCCCCTCAATGCT....................................................................................................................................................2111.001.00-----------1.00-
..............................................................................................................................................................ATACTGGGGATTTTGTTTGTTTACTT..................................................................261.000.00----1.00--------
....................................................................................................................................................................................ATTTTTATTTATTTTTATTATAG...............................................231.000.00-1.00-----------
................................................................................................................................................................ACTGGGGATTTTGTTTGTTTACTT..................................................................241.000.00-----1.00-------
..............................................................................................................................................................................................ATTTTTATTATTATTTTTTTTGCG....................................241.000.00-----1.00-------
.................................................................................................................................................................................TTTATTTTTATTTATTTTTATTATTATTTTTTTTG......................................351.000.00---1.00---------
.............................................................................................................................................................TATACTGGGGATTTTGTTTGTTTATTTCTA...............................................................301.000.00----1.00--------
.......................................................................................................................................................................................................ATTATTTTTTTTTTGAGACAGGACG..........................251.000.00-----1.00-------
......................................................................................................................................................................................TTTTATTTATTTTTATTATTAAATG...........................................251.000.00-1.00-----------
..................................................................................................................................................................................TTATTTTTATTTATTTTTATTATTATTTTTTTT.......................................3311.001.00--1.00----------
................................................................................................................................................................................................TTTTATTATTATTTTTTTATG.....................................211.000.00-1.00-----------
.......................................................................................................................................................................ATTTTGTTTGTTTATTTTTATTTATTC........................................................271.000.00-----1.00-------
....................................................................................................................................................................GGGATTTTGTTTGTTTATTTTTATT.............................................................2511.001.00----1.00--------
.................................................................................................................................................................................................TTTATTATTATTTTTTTTTCACG..................................231.000.00--1.00----------
...............................................................................................................................................................TACTGGGGATTTTGTTTGTTTATTTTTATCT............................................................311.000.00-----1.00-------
..............................................................................................................................................................................................ATTTTTATTATTATTTTTTTTTAA....................................241.000.001.00------------
..........................................................................................................................................TTACATTTCTAATATTAG..............................................................................................181.000.00-------1.00-----
.......................................................................................................................................................................................TTTATTTATTTTTATTATTACTTG...........................................241.000.00---1.00---------
..........................................................................................................................................................................................................ATTTTTTTTTTGAGACAGAGTTTCTG......................261.000.00----1.00--------
.......................................................................................................................................................................ATTTTGTTTGTTTATTTTTATACTT..........................................................251.000.00-----1.00-------
.....................................................................................................................................................................................................TTATTATTTTTTTTTTGAGACTGG.............................241.000.00----1.00--------
..........................................................................................................................................................................................ATTTATTTTTATTATTATTTCT..........................................221.000.00--1.00----------
................................................................................................................................................................................................TTTTATTATTATTTTTTTTTAAAG..................................241.000.00---1.00---------
.......................................................................................................................................................................................TTTATTTATTTTTATTACAG...............................................201.000.00---1.00---------
.................................................................................................................................................................................TTTATTTTTATTTATTTTTATTATAG...............................................261.000.00--1.00----------
...............................................................................................................................................................................................TTTTTATTATTATTTTTTTTTTGGGG.................................261.000.00-----1.00-------
......................................................................................................................................................................................TTTTATTTATTTTTATTATTAAATT...........................................251.000.001.00------------
.............................................................................................................................................................................................TATTTTTATTATTATTTATTG........................................211.000.001.00------------
..............................................................................................................................................................ATACTGGGGATTTTGTTTGTTTACC...................................................................251.000.00----1.00--------
............................................................................................................................................................................................TTATTTTTATTATTATTTTTTTTATTG...................................271.000.001.00------------
................................................................................................................................................................ACTGGGGATTTTGTTTTA........................................................................181.000.00------1.00------
.....................................................................................................................................................................................TTTTTATTTATTTTTATTATTATATG...........................................261.000.001.00------------
.................................................................................................................................................................................TTTATTTTTATTTATTTTTATTATTATTTTCTT........................................331.000.00------------1.00
..........................................................................................................................................................................................ATTTATTTTTATTATTATTTTTTGG.......................................251.000.00-----1.00-------
..................................................................................................................................................................................................................TTTGAGACAGAGTTTCGCCCC...................211.000.00-----1.00-------
.......................................................................................................................................................................ATTTTGTTTGTTTATTTTTATTCATC.........................................................261.000.00-----1.00-------
.............................................................................................................................................................TATACTGGGGATTTTGTTCGTT.......................................................................221.000.00----1.00--------
..............................................................................................................................................................................................ATTTTTATTATTATTTTTTCTAG.....................................231.000.00---1.00---------
........................................................................................................................................................................................TTATTTATTTTTATTATTATTTTTTTTTA.....................................291.000.001.00------------
.............................................................................................................................................................................................TATTTTTATTATTATTTTTTTTTTTAG..................................271.000.00---1.00---------
..............................................................................................................................................................ATACTGGGGATTTTGTTTGTTTATTTTTATC.............................................................311.000.00-----1.00-------
................................................................................................................................................................................................TTTTATTATTATTTTTTTTCTAG...................................231.000.00--1.00----------
................................................................................................................................................................ACTGGGGATTTTGTTAAT........................................................................181.000.00------1.00------
.................................................................................................................................................................................TTTATTTTTATTTATTTTTATTATTATTTTTTTTT......................................3511.001.00---1.00---------
......................................................................................................................................................................................TTTTATTTATTTTTATTATTATTTTTTTTTAT....................................321.000.00-1.00-----------
...............................................................................................................................................................TACTGGGGATTTTGTTTGTTTATC...................................................................241.000.00----1.00--------
...............................................................................................................................................................TACTGGGGATTTTGTTTGTTTATTTTTATC.............................................................301.000.00----1.00--------
.........................................................................................................................................................TCTTTATACTGGGGATT................................................................................1720.500.50----0.50--------
...................................................................................................................ATAAACTTTAAACATTTT.....................................................................................................................1870.290.29-0.140.14----------
...........................................................................................................................................................................................TTTATTTTTATTATTATTTTTTTTTTGAG..................................2940.250.25-----0.25-------
...........................................................................................................................................................................................TTTATTTTTATTATTATTTTTTTTTTG....................................2740.250.25--0.25----------
............................................................................................................................................................................................TTATTTTTATTATTATTTTTTTTTTG....................................2650.200.200.20------------

Antisense strand
TTGATCCTAATCCTTCCTTACGAGATATTGACACACAAGCTAAATACCAGGTATTACATGTATATTTATATTCTGTAAATGGTTGCACACCCCCTCAATGCTCCCTTTTAAATAGATAAACTTTAAACATTTTTCATATTACATTTCTAATATTCTTTATACTGGGGATTTTGTTTGTTTATTTTTATTTATTTTTATTATTATTTTTTTTTTGAGACAGAGTTTCGCTCTTGTTGCCCAAGCTGGAGTG
................................................................................((..(((...........)))..))....(((((((((((...((((((.....((......((..(((.(((.....))).)))..))..))..))))))..)))))))))))........................................................
............................................................................77................................................................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189784SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..................................................................................................................................................................................TTATTTTTATTTATTTTTATGG.................................................. 221.000.00------1.00------
.........................................................................................................................................................................TTTGTTTGTTTATTTTTATTTATTCG....................................................... 261.000.00---1.00---------
.............................................................................................CTCAATGCTCCCTTTTG............................................................................................................................................ 171.000.00---------1.00---
.......................................................................................................................................................................................................................GACAGAGTTTCGCTCTTGTTGCCCAACCA...... 291.000.00----1.00--------
....................................................................................................................................................................................................................TGAGACAGAGTTTCGCTCTC.................. 201.000.00--------1.00----