ID: uc009vzg.2_intron_4_0_chr1_53250726_f.3p
GENE: (5)
chr1:53255475-53255724+


(1)
AGO1.ip 		(1)
BREAST 		(12)
CELL-LINE 		(1)
HELA 		(1)
LIVER 		(2)
OTHER

Sense strand
AATAAAAAAAAGGTACAAGTAAACTTGTATGGGTCTCCTGGAACTCAGCCTTTCAATACTAGGGGGGCAGATAAAGATTGTAAGAAATAACTGGTGTTTCATCAGTCTTCTTCTTTTTTTTTTTTTATGGAAGCTACCATGGTTAAAATATAACAAAGTGATATTTTATTTAGGATTTTTTTCTTCCTTTGATTCTTTAGTTACAGAAGAATTGCCTCCTTTCACTTTGCAGTGACCGGATCCTTCAAGA
........................................................................................................(((..(((..((..((((..((((((......))))))..))))...))..))).)))...(((...((((.........)))).)))..........................................................
.......................................................................................................104.............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
............................................................................................................TCTTCTTTTTTTTTTTTTATCAG.......................................................................................................................2316.000.0010.00-6.00---------------
............................................................................................................TCTTCTTTTTTTTTTTTTATTTTG......................................................................................................................244.000.003.001.00----------------
.............TACAAGTAAACTTGTATGGGTCTCC....................................................................................................................................................................................................................2514.004.00-----4.00------------
............................................................................................................TCTTCTTTTTTTTTTTTTATAATG......................................................................................................................243.000.003.00-----------------
..........................................................................................................CTTCTTCTTTTTTTTTTTTTATG.........................................................................................................................2342.752.751.25-0.750.50---0.25----------
.............................................................................................................CTTCTTTTTTTTTTTTTATG.........................................................................................................................2072.142.140.57-0.710.43---0.43----------
.....................................................................................................................................................................................TCTTCCTTTGATTCTTTAG..................................................1912.002.00-------------1.00---1.00
.............................................................................................................CTTCTTTTTTTTTTTTTATAAGG......................................................................................................................232.000.00--1.00----1.00----------
.............................................................................................................CTTCTTTTTTTTTTTTTATCAG.......................................................................................................................222.000.00---1.00---1.00----------
..............................................................................................TGTTTCATCAGTCTTCTTCTTTTTTATG................................................................................................................................281.000.00------1.00-----------
.........................................................................................................TCTTCTTCTTTTTTTTTTTTTACG.........................................................................................................................241.000.00-1.00----------------
..............................................................................................................TTCTTTTTTTTTTTTTATGCTGG.....................................................................................................................231.000.00----1.00-------------
.............................................................................................................CTTCTTTTTTTTTTTTTACGG........................................................................................................................211.000.00--1.00---------------
.............................................................................................................CTTCTTTTTTTTTTTTTACATA.......................................................................................................................221.000.00---1.00--------------
............................................................................................................TCTTCTTTTTTTTTTTTTACCAG.......................................................................................................................231.000.00---1.00--------------
..................................................................................................TCATCAGTCTTCTTCTTGTTG...................................................................................................................................211.000.00----------------1.00-
........................................................................................................GTCTTCTTCTTTTTTTTTTTTTTCT.........................................................................................................................251.000.00-1.00----------------
...........................................................................................................TTCTTCTTTTTTTTTTTTTACG.........................................................................................................................221.000.001.00-----------------
.............................................................................................................CTTCTTTTTTTTTTTTTATTCCG......................................................................................................................231.000.00---1.00--------------
..................................................................................................................................................................................................................................TTGCAGTGACCGGATCCTTCAAGACGT271.000.00----1.00-------------
.......................................................................................................AGTCTTCTTCTTTTTTTTTTGGG............................................................................................................................231.000.00-1.00----------------
..................................................................................................................................................................ATTTTATTTAGGATTTTTTATT..................................................................221.000.00------1.00-----------
............................................................................................................TCTTCTTTTTTTTTTTTTATGGGGAG....................................................................................................................261.000.00-1.00----------------
.........................................................................................................TCTTCTTCTTTTTTTTTTTTTATAG........................................................................................................................251.000.00---1.00--------------
.........................................................................................................TCTTCTTCTTTTTTTTTTTTTACAG........................................................................................................................251.000.00---1.00--------------
........................................................................................................................................................................TTTAGGATTTTTTTCTTTGGT.............................................................211.000.00-1.00----------------
...........................................................................................................TTCTTCTTTTTTTTTTTTTACTTC.......................................................................................................................241.000.001.00-----------------
.........................................................................................................TCTTCTTCTTTTTTTTTTTTTATATG.......................................................................................................................261.000.00--1.00---------------
.....................................................................................................................................................................TTATTTAGGATTTTTTTCTTTAG..............................................................231.000.00------------1.00-----
...............................................................................................................................................................................TTTTTTTCTTCCTTTGCAG........................................................191.000.00-1.00----------------
.......................................................................................................AGTCTTCTTCTTTTTTTTTTTGG............................................................................................................................231.000.00-1.00----------------
.....................................................................................................TCAGTCTTCTTCTTTTTTTTTTTTATGG.........................................................................................................................281.000.00----1.00-------------
..........................................................................................................CTTCTTCTTTTTTTTTTTTTACCG........................................................................................................................241.000.001.00-----------------
............................................................................................................TCTTCTTTTTTTTTTTTTATTTC.......................................................................................................................231.000.00--1.00---------------
.......................................................................................................AGTCTTCTTCTTTTTTTTTTTTTTAAC........................................................................................................................271.000.00-1.00----------------
................................................................................................TTTCATCAGTCTTCTTCTTTTTTATA................................................................................................................................261.000.00------1.00-----------
...........................................................................................................TTCTTCTTTTTTTTTTTTTACCTT.......................................................................................................................241.000.00----1.00-------------
............................................................................................................TCTTCTTTTTTTTTTTTTATAAT.......................................................................................................................231.000.00--1.00---------------
................................................................................................................................................................ATATTTTATTTAGGATTTTTTTC...................................................................2311.001.00----1.00-------------
............................................................................................................TCTTCTTTTTTTTTTTTTATAATT......................................................................................................................241.000.001.00-----------------
...........................................................................................................TTCTTCTTTTTTTTTTTTTATTAG.......................................................................................................................241.000.00---1.00--------------
.....................................................................................................................................................................TTATTTAGGATTTTTTTTGT.................................................................201.000.00-----------1.00------
.............................................................................................................CTTCTTTTTTTTTTTTTATTAGC......................................................................................................................231.000.00------1.00-----------
.........................................................................................................TCTTCTTCTTTTTTTTTTTTTATAATG......................................................................................................................271.000.001.00-----------------
........................................................................................................GTCTTCTTCTTTTTTTTTTAAG............................................................................................................................221.000.00-------1.00----------
.........................................................................................................TCTTCTTCTTTTTTTTTTTTTATG.........................................................................................................................2441.001.000.25-0.500.25--------------
..............................................................................................................TTCTTTTTTTTTTTTTATGCAGC.....................................................................................................................231.000.00-1.00----------------
............................................................................................................TCTTCTTTTTTTTTTTTTATATG.......................................................................................................................231.000.001.00-----------------
...........................................................................................................TTCTTCTTTTTTTTTTTTTACTAG.......................................................................................................................241.000.00----1.00-------------
.......................................................................................................AGTCTTCTTCTTTTTTTTTTTTTTTCC........................................................................................................................271.000.00-1.00----------------
..........................................................................................................CTTCTTCTTTTTTTTTTTTTATTC........................................................................................................................241.000.001.00-----------------
.......................................................................................................AGTCTTCTTCTTTTTTTTTTTTGG...........................................................................................................................241.000.00-1.00----------------
..............................................................................................................TTCTTTTTTTTTTTTTATGGGAGG....................................................................................................................241.000.00-1.00----------------
......................................................................................................................TTTTTTTTATGGAAGGGTT.................................................................................................................191.000.00--------1.00---------
............................................................................................................TCTTCTTTTTTTTTTTTTATG.........................................................................................................................2150.400.400.20------0.20----------
...........................................................................................................TTCTTCTTTTTTTTTTTTTATG.........................................................................................................................2250.400.400.20-0.20---------------
.........................................................................................................TCTTCTTCTTTTTTTTTTTTTATGTG.......................................................................................................................2640.251.00-0.25----------------
.............................................................................................................CTTCTTTTTTTTTTTTTATGTTCA.....................................................................................................................2470.142.14-0.14----------------

Antisense strand
AATAAAAAAAAGGTACAAGTAAACTTGTATGGGTCTCCTGGAACTCAGCCTTTCAATACTAGGGGGGCAGATAAAGATTGTAAGAAATAACTGGTGTTTCATCAGTCTTCTTCTTTTTTTTTTTTTATGGAAGCTACCATGGTTAAAATATAACAAAGTGATATTTTATTTAGGATTTTTTTCTTCCTTTGATTCTTTAGTTACAGAAGAATTGCCTCCTTTCACTTTGCAGTGACCGGATCCTTCAAGA
........................................................................................................(((..(((..((..((((..((((((......))))))..))))...))..))).)))...(((...((((.........)))).)))..........................................................
.......................................................................................................104.............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
..................................................................................................TCATCAGTCTTCTTCTTTTTG................................................................................................................................... 211.000.00----------1.00-------
.................................................................................................TTCATCAGTCTTCTTCG........................................................................................................................................ 171.000.00-1.00----------------
..................................................................................................................................................................................................................ATTGCCTCCTTTCACCGTC..................... 191.000.00--------------1.00---
................................................................................................TTTCATCAGTCTTCTTCTTGA..................................................................................................................................... 211.000.00---------1.00--------
........................................................................................................................................................................................TCCTTTGATTCTTTAGAAA............................................... 191.000.00---------------1.00--