ID: uc009vxn.2_intron_0_0_chr1_45795110_r.3p
GENE: (9)
chr1:45795060-45795309-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
BRAIN 		(2)
BREAST 		(10)
CELL-LINE 		(1)
CERVIX 		(1)
HELA 		(3)
LIVER 		(2)
OTHER 		(4)
SKIN 		(1)
XRN.ip

Sense strand
GGACAATTCGATTCCCTCAGGCAGCCTTTTGGAGGGTTGATTGATGGGGCAGATACTTGAGGCAGGATGAAAGCTCTACAGCATTCCAGGCTAAGCCTAGCTAGATCAGTAGAGTCGGGGAAAGGGAGAGAGGACAAGGAGAGGATTCTCTGCTCCCCCTCCCCCAACTACAAGGCCTCCCTCCTTCCATTTTTTCACAGGGTTCCAAAAGGTCCCAGGTGTCCTCTCCGTGCAGTCGGAAAAAGCCCCG
............................................................................................................((((....(((((..(((((((((((...........)))))).)))))..)))))...)))).(((....)))....................................................................
............................................................................................................109........................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR191541(GSM715651)
63genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040035(GSM532920)
G001T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................................................GTCGGGGAAAGGGAGAGAGGA....................................................................................................................21117.0017.0017.00------------------------
.................................................................................................................GTCGGGGAAAGGGAGAGAGG.....................................................................................................................2019.009.007.00-2.00----------------------
.................................................................................................................GTCGGGGAAAGGGAGAGAGGAA...................................................................................................................2213.0017.002.00---------1.00--------------
..........................................................................................................................AGGGAGAGAGGACAAGGA..............................................................................................................1822.502.50-2.50-----------------------
.........................................................................................................................AAGGGAGAGAGGACAAGGCCT............................................................................................................212.000.00-----1.001.00------------------
.....................................................................................................................................................................................................................................GTGCAGTCGGAAAAAGCC...1812.002.00-2.00-----------------------
.................................................................................................................................GAGGACAAGGAGAGGATTCTCTG..................................................................................................2312.002.00-2.00-----------------------
..............................................................................................GCCTAGCTAGATCAGTAGAG........................................................................................................................................2012.002.00--2.00----------------------
........................................TTGATGGGGCAGATACTTGAG.............................................................................................................................................................................................2112.002.00-----------2.00-------------
..............................................................................................................................AGAGAGGACAAGGAGAGGAT........................................................................................................2012.002.00-2.00-----------------------
..............................................................................................................................................................................GCCTCCCTCCTTCCAACCC.........................................................191.000.00--------------------1.00----
............................................................................................................GTAGAGTCGGGGAAAGGGA...........................................................................................................................1911.001.00----1.00--------------------
.......................................................................AGCTCTACAGCATTCTGGG................................................................................................................................................................191.000.00---------1.00---------------
.....................................................................................................TAGATCAGTAGAGTCGGGGA.................................................................................................................................2011.001.00-------------------1.00-----
.......................................................................................................................................................................................................................................GCAGTCGGAAAAAGCCCC.1811.001.00----1.00--------------------
.........................................................TGAGGCAGGATGAAACAA...............................................................................................................................................................................181.000.00-------1.00-----------------
.........................................................................................................................AAGGGAGAGAGGACAAGGCCAT...........................................................................................................221.000.00-----1.00-------------------
....................................................................................................................................................................................CTCCTTCCATTTTTTCACAGGGTTC.............................................2511.001.00--------1.00----------------
.................................................................................................................................GAGGACAAGGAGAGGATT.......................................................................................................1821.001.00-0.50--------------------0.50--
.............................................................................................AGCCTAGCTAGATCAGTAGA.........................................................................................................................................2011.001.00----------------1.00--------
.................................................................................................................GTCGGGGAAAGGGAGAGGGGA....................................................................................................................211.000.00----------1.00--------------
...........................................................................................................................................................................................................TCCAAAAGGTCCCAGGTGTCCTCTC......................2511.001.00-------1.00-----------------
................................................................................................................AGTCGGGGAAAGGGAGAGA.......................................................................................................................1911.001.00---------------1.00---------
..................................................................................................................................................................................................TCACAGGGTTCCAAAGCT......................................181.000.00---------1.00---------------
.............................................................................................................................GAGAGAGGACAAGGAGAGGATT.......................................................................................................2211.001.00------1.00------------------
.........................................................................................................TCAGTAGAGTCGGGGAAAGG.............................................................................................................................2011.001.00--1.00----------------------
...............................................................................................................................................................................................TTTTCACAGGGTTCCAAAAGG......................................2111.001.00--1.00----------------------
.................................................................................................................................GAGGACAAGGAGAGGATTCT.....................................................................................................2021.001.00-1.00-----------------------
........................................................................................................ATCAGTAGAGTCGGGAC.................................................................................................................................171.000.00------------1.00------------
................................................................................................................AGTCGGGGAAAGGGAGAGAGA.....................................................................................................................211.000.00--------1.00----------------
...............................................................................................................................GAGAGGACAAGGAGAGCAT........................................................................................................191.000.00-----------------1.00-------
.................................................................................................................GTCGGGGAAAGGGAGAGATGA....................................................................................................................211.000.001.00------------------------
...............................................................................................................................GAGAGGACAAGGAGAGGA.........................................................................................................1820.500.50-----------------------0.50-
....................................................................................................................GGGGAAAGGGAGAGAGGA....................................................................................................................1870.140.14------------------------0.14

Antisense strand
GGACAATTCGATTCCCTCAGGCAGCCTTTTGGAGGGTTGATTGATGGGGCAGATACTTGAGGCAGGATGAAAGCTCTACAGCATTCCAGGCTAAGCCTAGCTAGATCAGTAGAGTCGGGGAAAGGGAGAGAGGACAAGGAGAGGATTCTCTGCTCCCCCTCCCCCAACTACAAGGCCTCCCTCCTTCCATTTTTTCACAGGGTTCCAAAAGGTCCCAGGTGTCCTCTCCGTGCAGTCGGAAAAAGCCCCG
............................................................................................................((((....(((((..(((((((((((...........)))))).)))))..)))))...)))).(((....)))....................................................................
............................................................................................................109........................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR191541(GSM715651)
63genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040035(GSM532920)
G001T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................TGGAATGCTGTAGAGCT.................................................................................................................................................................. 1713.003.00---3.00---------------------
................................................................................................................................................................AGGCCTTGTAGTTGGGGG........................................................................ 1812.002.00-2.00-----------------------
....................................................................................................................................................................................CTCCTTCCATTTTTTTGGA................................................... 191.000.00--------------1.00----------
.................CAGGCAGCCTTTTGGGTT....................................................................................................................................................................................................................... 181.000.00-------------1.00-----------
............................................................................................................................................................................................................ACACCTGGGACCTTTTGG............................ 1811.001.00-1.00-----------------------
........................................................................................................................................................................................................................AGGTGTCCTCTCCGTCAC................ 181.000.00---------------------1.00---
.............................................................................................................................................................CCTCCCCCAACTACAAGGT.......................................................................... 191.000.00--1.00----------------------
.............................................GGGGCAGATACTTGAGG............................................................................................................................................................................................ 171.000.00------------------1.00------
............................................................................................................................................................CCTTGTAGTTGGGGGAGGG........................................................................... 1911.001.00--1.00----------------------