ID: uc009vph.2_intron_1_0_chr1_19403397_r.3p
GENE: (17)
chr1:19403347-19403596-


(1)
B-CELL 		(4)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(2)
HELA 		(1)
LIVER 		(1)
RRP40.ip 		(10)
SKIN

Sense strand
TAAGGAGGGCCTAAGAGGAATGAAGTGAAATTGTGTCGTTCCTGGAGACAAAACGCACGCTCTAGGGTGCCTGTTGGTATGCTTTGGTGTAGGTTGGGAGGGCTGTCCTTTGAGGGGTTGAAATGGCCTGACTGACTTGAGGCGGAAGATGAGGCAGCAGTAAGTCACCCACCTCTCTTGTCTCCTGTTGATTCTCGTAGAAGGTGCCTACCAGTAACACAGAGGGAGGCTGGTCCTGCTCTCTCGCTGA
.....................................................................................................((((.((((....(((((.....)))))..(((........))).....))))))))............................................................................................
....................................................................................................101...........................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
...........................................................................................................................................AGGCGGAAGATGAGGCTGAA...........................................................................................207.000.007.00-------------------
............................................................................................................................................GGCGGAAGATGAGGCTGT............................................................................................186.000.006.00-------------------
............................................................................................................................................GGCGGAAGATGAGGCTGAA...........................................................................................194.000.004.00-------------------
.........................................................................................................................................................................................TGTTGATTCTCGTAGAAGGTGCCTAC.......................................2612.002.00-2.00------------------
...................................................................................................................................................................................................................CAGTAACACAGAGGGAGGCT...................2012.002.00----2.00---------------
...........................................................................................................................................AGGCGGAAGATGAGGCAGA............................................................................................192.000.002.00-------------------
............................................................................................................................................GGCGGAAGATGAGGCTTA............................................................................................182.000.002.00-------------------
...........................................................................................................................................AGGCGGAAGATGAGGCTT.............................................................................................182.000.002.00-------------------
...........................................................................................................................................AGGCGGAAGATGAGGCTTTA...........................................................................................202.000.002.00-------------------
............................................................................................................................................GGCGGAAGATGAGGCTGAG...........................................................................................192.000.002.00-------------------
............................................................................................................................................GGCGGAAGATGAGGCTGC............................................................................................182.000.002.00-------------------
...........................................................................................................................................AGGCGGAAGATGAGGCTGC............................................................................................192.000.002.00-------------------
...........................................................................................................................................AGGCGGAAGATGAGGCTTT............................................................................................192.000.002.00-------------------
............................................................................................................................................GGCGGAAGATGAGGCTTTA...........................................................................................191.000.001.00-------------------
............................................................................................................................................GGCGGAAGATGAGGCTGG............................................................................................181.000.001.00-------------------
............................................................................................................................................GGCGGAAGATGAGGCTGTC...........................................................................................191.000.001.00-------------------
.........................................................................................................TCCTTTGAGGGGTTGAAATGG............................................................................................................................2111.001.00-------------------1.00
.................................................AAAACGCACGCTCTAGGGTGCCTGT................................................................................................................................................................................2511.001.00-------------1.00------
..........................................................................................................................................................................................................................ACAGAGGGAGGCTGGTCC..............1811.001.00---------1.00----------
............................................................................................................................................GGCGGAAGATGAGGCTGTT...........................................................................................191.000.001.00-------------------
............................................................................................................................................GGCGGAAGATGAGGCCGA............................................................................................181.000.001.00-------------------
......................AAGTGAAATTGTGTCGTTCCTGGAGACA........................................................................................................................................................................................................2811.001.00-----------1.00--------
......................................TTCCTGGAGACAAAACG...................................................................................................................................................................................................1711.001.00-------1.00------------
.......................................................CACGCTCTAGGGTGCCTA.................................................................................................................................................................................181.000.00--1.00-----------------
...........................................................................................................................................AGGCGGAAGATGAGGCTGT............................................................................................191.000.001.00-------------------
...........................................................................................................................................AGGCGGAAGATGAGGCTA.............................................................................................181.000.001.00-------------------
...................................................AACGCACGCTCTAGGGTGCCTGCTGG.............................................................................................................................................................................261.000.00---1.00----------------
..............................................................................................................................................................................................................................AGGGAGGCTGGTCCTGCT..........1811.001.00--------1.00-----------
............................................................................................................................................GGCGGAAGATGAGGCTTC............................................................................................181.000.001.00-------------------
...............................................................................................................................CTGACTGACTTGAGGCGGAAGATGAG.................................................................................................2611.001.00-----1.00--------------
..................................................................GTGCCTGTTGGTATGCTTT.....................................................................................................................................................................1911.001.00----------------1.00---
....................................................................................TGGTGTAGGTTGGGAGGGCTGTCC..............................................................................................................................................2411.001.00---1.00----------------
..........................................................................................................................................................................................GTTGATTCTCGTAGA.................................................1511.001.00------1.00-------------
..........................................................................................................................ATGGCCTGACTGACTTGAGGCGGAAGATGAG.................................................................................................3111.001.00---------------1.00----
...............................................................................................................GAGGGGTTGAAATGGCCTGACTGACTTGAGGCGGAAGATGAGGCAGCAGTA........................................................................................5111.001.00------------------1.00-
.......................................................CACGCTCTAGGGTGCCAA.................................................................................................................................................................................181.000.00--1.00-----------------
...........................................................................................................................................AGGCGGAAGATGAGGGTGA............................................................................................191.000.001.00-------------------
......................................TTCCTGGAGACAAAACGC..................................................................................................................................................................................................1811.001.00----------1.00---------
...........................................................................................................................................AGGCGGAAGATGAGGCTGAG...........................................................................................201.000.001.00-------------------
.........................................CTGGAGACAAAACGCACGCTCTAGG........................................................................................................................................................................................2511.001.00-1.00------------------

Antisense strand
TAAGGAGGGCCTAAGAGGAATGAAGTGAAATTGTGTCGTTCCTGGAGACAAAACGCACGCTCTAGGGTGCCTGTTGGTATGCTTTGGTGTAGGTTGGGAGGGCTGTCCTTTGAGGGGTTGAAATGGCCTGACTGACTTGAGGCGGAAGATGAGGCAGCAGTAAGTCACCCACCTCTCTTGTCTCCTGTTGATTCTCGTAGAAGGTGCCTACCAGTAACACAGAGGGAGGCTGGTCCTGCTCTCTCGCTGA
.....................................................................................................((((.((((....(((((.....)))))..(((........))).....))))))))............................................................................................
....................................................................................................101...........................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
.........................................................................................................................................................................CACCTCTCTTGTCTCTAG............................................................... 182.000.00------------1.00-1.00-----
................................GTGTCGTTCCTGGAGCA......................................................................................................................................................................................................... 171.000.00-----------------1.00--