ID: uc009voy.1_intron_2_0_chr1_17257090_f.5p
GENE: CROCC(3)
chr1:17257040-17257289+


(2)
B-CELL
(4)
BREAST
(1)
CELL-LINE
(11)
CERVIX
(2)
FIBROBLAST
(2)
HEART
(1)
OTHER
(18)
SKIN

Sense strand
GCCGCAAGGAGCTGGAGCACCGGGAGGCGGCGTGGAGGCGCGAGGAGGAGGTGGGCATGGGGGTGCAGGGAGGCCAGCCTGACCCAAGAGGAAGGGGCACTGCAGAGGAGGGAGGACTCAGAAGCCTGGAGAGGGAGAGGGAGCACTGTCCAAGGGAGCCTGTTAGCAGAAGTAAATAGCCGTCATCACAATAGCTGGTCTTTATCAGTGTGTAGCATGTACCACGTGCACGGTGTGCGTTGACCTTTAT
..................................................................................................................................((.(((.((......)).)))...((...(((((.((....)).))))))).))..................................................................
................................................................................................................................129......................................................186..............................................................
SizePerfect hitTotal NormPerfect NormSRR040036(GSM532921)
G243N. (cervix)
SRR040029(GSM532914)
G026T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR189784SRR040037(GSM532922)
G243T. (cervix)
SRR040038(GSM532923)
G531N. (cervix)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR040018(GSM532903)
G701N. (cervix)
SRR040040(GSM532925)
G612N. (cervix)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR040010(GSM532895)
G529N. (cervix)
SRR040019(GSM532904)
G701T. (cervix)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
TAX577739(Rovira)
total RNA. (breast)
SRR040039(GSM532924)
G531T. (cervix)
TAX577590(Rovira)
total RNA. (breast)
TAX577742(Rovira)
total RNA. (breast)
SRR040035(GSM532920)
G001T. (cervix)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
.....................................................................................................................................GGAGAGGGAGCACTGTAGCT.................................................................................................2023.000.0017.003.00----1.00-------1.00---1.00------------------------
.....................................................................................................................................GGAGAGGGAGCACTGTTGCT.................................................................................................205.000.003.00--1.00-------1.00-------------------------------
.....................................................................................................................................GGAGAGGGAGCACTGTAGC..................................................................................................195.000.002.00-----1.00-1.00----1.00-----------------------------
............................................................................................AGGGGCACTGCAGAGGAGGGAGGACCCAG.................................................................................................................................294.000.00--4.00----------------------------------------
.....................................................................................................................................GGAGAGGGAGCACTGCAGC..................................................................................................193.000.003.00------------------------------------------
......................................................................................................................................GAGAGGGAGCACTGTAGCT.................................................................................................192.000.00------------1.00----1.00-------------------------
........................................................................................................................................................................................................................ATGTACCACGTGCACTAT................181.000.00----1.00--------------------------------------
.....................................................................................................................................GGAGAGGGAGCACTGTTGT..................................................................................................191.000.001.00------------------------------------------
.....................................................................................................................................GGAGAGGGAGCACTGTATG..................................................................................................191.000.001.00------------------------------------------
.....................................................................................................................................GGAGAGGGAGCACTGATGT..................................................................................................191.000.001.00------------------------------------------
.....................................................................................................................................GGAGAGGGAGCACTGTCGC..................................................................................................191.000.00---1.00---------------------------------------
......................................................................................................................................GAGAGGGAGCACTGTATG..................................................................................................181.000.00---------------------1.00---------------------
..................ACCGGGAGGCGGCGTTTG......................................................................................................................................................................................................................181.000.00----------------------1.00--------------------
.....................................................................................................................................GGAGAGGGAGCACTGTAGCG.................................................................................................201.000.001.00------------------------------------------
.....................................................................................................................................GGAGAGGGAGCACTGTCGCA.................................................................................................201.000.00-----1.00-------------------------------------
.....................................................................................................................................GGAGAGGGAGCACTGTACCG.................................................................................................201.000.00-----1.00-------------------------------------
....CAAGGAGCTGGAGCACG.....................................................................................................................................................................................................................................171.000.00-----------------------1.00-------------------
.....................................................................................................................................GGAGAGGGAGCACTGTTGG..................................................................................................191.000.001.00------------------------------------------
......................................................................................................................................GAGAGGGAGCACTGTATCT.................................................................................................191.000.00-1.00-----------------------------------------
.....................................................................................................................................GGAGAGGGAGCACTGTTGC..................................................................................................191.000.001.00------------------------------------------
.....................................................................................................................................GGAGAGGGAGCACTGTGGCT.................................................................................................201.000.00---1.00---------------------------------------
.....................................................................................................................................GGAGAGGGAGCACTGTAG...................................................................................................181.000.001.00------------------------------------------
..................ACCGGGAGGCGGCGTTCTT.....................................................................................................................................................................................................................191.000.00---------------1.00---------------------------
.....................................................................................................................................GGAGAGGGAGCACTGAACC..................................................................................................191.000.001.00------------------------------------------
.....................................................................................................................................GGAGAGGGAGCACTGTTGGG.................................................................................................201.000.001.00------------------------------------------
.....................................................................................................................................GGAGAGGGAGCACTGTGGC..................................................................................................191.000.00---------1.00---------------------------------
...................................................................................................................................................................TAGCAGAAGTAAATAATTG....................................................................191.000.00----------------1.00--------------------------
..CGCAAGGAGCTGGAGACG......................................................................................................................................................................................................................................181.000.00--------------------1.00----------------------
..................................................................................................ACTGCAGAGGAGGGAGGGCA....................................................................................................................................201.000.00-------------------1.00-----------------------
.....................................................................................................................................GGAGAGGGAGCACTGTTGTT.................................................................................................201.000.001.00------------------------------------------
.....................................................................................................................................GGAGAGGGAGCACTGTAAAA.................................................................................................201.000.001.00------------------------------------------
.....................................................................................................................................GGAGAGGGAGCACTGTCGAG.................................................................................................201.000.001.00------------------------------------------
.....................................................................................................................................GGAGAGGGAGCACTGTAGTT.................................................................................................201.000.001.00------------------------------------------
.....................................................................................AAGAGGAAGGGGCACTGC...................................................................................................................................................1820.500.50-------0.50-----------------------------------
....................................................................................................................CTCAGAAGCCTGGAGAGGGAGAGGGAGCAC........................................................................................................3020.500.50------------------------0.50------------------
...................................................................................................................................................................TAGCAGAAGTAAATAGC......................................................................1730.330.33-----------------------------0.33-------------
.........................................................TGGGGGTGCAGGGAGGC................................................................................................................................................................................1780.120.12----------------------------0.12--------------

Antisense strand
GCCGCAAGGAGCTGGAGCACCGGGAGGCGGCGTGGAGGCGCGAGGAGGAGGTGGGCATGGGGGTGCAGGGAGGCCAGCCTGACCCAAGAGGAAGGGGCACTGCAGAGGAGGGAGGACTCAGAAGCCTGGAGAGGGAGAGGGAGCACTGTCCAAGGGAGCCTGTTAGCAGAAGTAAATAGCCGTCATCACAATAGCTGGTCTTTATCAGTGTGTAGCATGTACCACGTGCACGGTGTGCGTTGACCTTTAT
..................................................................................................................................((.(((.((......)).)))...((...(((((.((....)).))))))).))..................................................................
................................................................................................................................129......................................................186..............................................................
SizePerfect hitTotal NormPerfect NormSRR040036(GSM532921)
G243N. (cervix)
SRR040029(GSM532914)
G026T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR189784SRR040037(GSM532922)
G243T. (cervix)
SRR040038(GSM532923)
G531N. (cervix)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR040018(GSM532903)
G701N. (cervix)
SRR040040(GSM532925)
G612N. (cervix)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR040010(GSM532895)
G529N. (cervix)
SRR040019(GSM532904)
G701T. (cervix)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
TAX577739(Rovira)
total RNA. (breast)
SRR040039(GSM532924)
G531T. (cervix)
TAX577590(Rovira)
total RNA. (breast)
TAX577742(Rovira)
total RNA. (breast)
SRR040035(GSM532920)
G001T. (cervix)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
.........................................................................................................AGGAGGGAGGACTCAGAA............................................................................................................................... 181.000.00-------1.00-----------------------------------
........................................................ATGGGGGTGCAGGGAATTG............................................................................................................................................................................... 191.000.00----1.00--------------------------------------
.........................GGCGGCGTGGAGGCGGCCA.............................................................................................................................................................................................................. 191.000.00----------1.00--------------------------------
.......................................CCCATGCCCACCTCCTCCTCGC............................................................................................................................................................................................. 2240.750.75--------------------------0.250.25----0.25----------
.......................................CCCCCATGCCCACCTCCTCCTCGC........................................................................................................................................................................................... 2440.750.75---------------------------0.25-----0.25------0.25--
.......................................CCCCATGCCCACCTCCTCCTCGC............................................................................................................................................................................................ 2340.500.50----------------------------------0.25----0.25---
.......................................CATGCCCACCTCCTCCTCGC............................................................................................................................................................................................... 2040.500.50----------------------------0.25-------0.25------
............................................................................................................CCCTCTCCAGGCTTCTGAGTCCTCCCT................................................................................................................... 2720.500.50-------------------------0.50-----------------
.......................................TGCCCACCTCCTCCTCGC................................................................................................................................................................................................. 1840.500.50-------------------------------------0.250.25----
.......................................CACCCCCATGCCCACCTCCTCCTCGC......................................................................................................................................................................................... 2640.500.50--------------------------0.25--------0.25-------
.......................................ACCCCCATGCCCACCTCCTCCTCGC.......................................................................................................................................................................................... 2540.250.25------------------------------0.25------------
....................................CCATGCCCACCTCCTCCTCGCGCC.............................................................................................................................................................................................. 2440.250.25-------------------------------0.25-----------
...........................................................................................................................CCTCTCCCTCTCCAGGC.............................................................................................................. 1770.140.14-----------------------------------------0.14-