ID: uc009vmx.2_intron_3_0_chr1_10716794_r.3p
GENE: CASZ1(5)
chr1:10716744-10716993-


(1)
B-CELL
(1)
BRAIN
(3)
BREAST
(3)
CELL-LINE
(14)
CERVIX
(2)
HEART
(1)
OTHER
(37)
SKIN

Sense strand
CCTTTCTTGGGGCCAGGCCTCTTTGCCTCAATGGGCCTGGGATTCCCGCCAGGCCCAGTCACTTGCCTGGGCCTCTGCAACTTCACCTCCCCTCTGCATCCCATACAGGGCCCGAAGAGTCCTCCCTGGGGCTGGGGCTGGGGCTGGGGCTGGGACTGTCACCCACAGCAGGGCCCTGACCCCACCCCTCCTCCCTCCAGGTTCTCGGGCAGCCAGCACTGTGGCCACATCCACTGTGCCTACCAGTACC
.................................................................................................................................................((((.((((...(((((((......)))...))))))))))))..............................................................
.................................................................................................................................................146...................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040011(GSM532896)
G529T. (cervix)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040031(GSM532916)
G013T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040040(GSM532925)
G612N. (cervix)
SRR040041(GSM532926)
G612T. (cervix)
SRR040030(GSM532915)
G013N. (cervix)
GSM532877(GSM532877)
G691N. (cervix)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR040028(GSM532913)
G026N. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
GSM532884(GSM532884)
G871T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR040012(GSM532897)
G648N. (cervix)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................................................................................................................................................CCCACCCCTCCTCCCTGCGC..................................................2048.000.008.00-2.002.00-1.003.002.001.002.00-2.002.00-1.002.002.001.002.00-2.001.00---1.00--1.00----1.00-1.00-----1.001.001.001.001.00----------1.001.001.00---
...................................................................................................................................................................................CCCCACCCCTCCTCCCCGCG...................................................2023.000.00-4.00--3.002.001.002.001.00-----1.00--1.00-1.00--1.00-1.00----1.001.00------1.00---------1.001.00-------------
...................................................................................................................................................................................CCCCACCCCTCCTCCCCGC....................................................199.000.00-2.001.001.001.00--------------1.00------1.00------------------------1.00---1.00------
....................................................................................................................................................................................CCCACCCCTCCTCCCGCGC...................................................198.000.00--------1.001.002.00-----------1.001.00--------1.00---1.00-------------------------
....................................................................................................................................................................................CCCACCCCTCCTCCCTGCG...................................................196.000.001.00-1.00--------1.00---------1.00-----------------1.00--------------1.00-------
...................................................................................................................................................................................CCCCACCCCTCCTCCCCG.....................................................184.000.00---1.00-1.00----1.00-----------------------------------------1.00---------
......................................................................................................................................................TGGGACTGTCACCCACAGCAGGGC............................................................................2411.001.00-----------------------1.00--------------------------------------
................................................................................................................................GGGCTGGGGCTGGGGCTGGGGCTAAT................................................................................................261.000.00------------------------------------------------------------1.00-
................................................................................................................................................................................TGACCCCACCCCTCCTCCCTCCA...................................................2311.001.00-------------1.00------------------------------------------------
....................................................................................................................................................................................CCCACCCCTCCTCCCGTCT...................................................191.000.00--------------------------------------1.00-----------------------
........................................................................................................................................................GGACTGTCACCCACAGCAG...............................................................................1911.001.00-------------1.00------------------------------------------------
...................................................................................................................................................................................CCCCACCCCTCCTCCCGCC....................................................191.000.00-------------------------------1.00------------------------------
..........................................................................................................................................................................................................TCTCGGGCAGCCAGCACTG.............................1911.001.00----------------------------------------1.00---------------------
...........................................................................................................................................................................................................CTCGGGCAGCCAGCACTGTGG..........................2111.001.00-----------------------------------------------------------1.00--
........................GCCTCAATGGGCCTGCGG................................................................................................................................................................................................................181.000.00-----------------------------------------------------1.00--------
....................................................................................................................................................................................CCCACCCCTCCTCCCGTCG...................................................191.000.00--------------------------------------------------1.00-----------
.........................................................................TCTGCAACTTCACCTCCCCTCTGC.........................................................................................................................................................2411.001.00----------------------------------1.00---------------------------
...................................CCTGGGATTCCCGCCCGG.....................................................................................................................................................................................................181.000.00------------1.00-------------------------------------------------
.............................................................................................................................................................................................CCTCCCTCCAGGTTCTGCT..........................................191.000.00--1.00-----------------------------------------------------------
.................................................................................................................................................................CCCACAGCAGGGCCCTGA.......................................................................1820.500.50------------------------0.50-------------------------------------
....................................................................................................................................................................................................CCAGGTTCTCGGGCAG......................................1620.500.50-------------0.50------------------------------------------------
...............................................................................................................................................................................................................GGCAGCCAGCACTGTG...........................1660.330.33-------------------------------------------------------------0.33

Antisense strand
CCTTTCTTGGGGCCAGGCCTCTTTGCCTCAATGGGCCTGGGATTCCCGCCAGGCCCAGTCACTTGCCTGGGCCTCTGCAACTTCACCTCCCCTCTGCATCCCATACAGGGCCCGAAGAGTCCTCCCTGGGGCTGGGGCTGGGGCTGGGGCTGGGACTGTCACCCACAGCAGGGCCCTGACCCCACCCCTCCTCCCTCCAGGTTCTCGGGCAGCCAGCACTGTGGCCACATCCACTGTGCCTACCAGTACC
.................................................................................................................................................((((.((((...(((((((......)))...))))))))))))..............................................................
.................................................................................................................................................146...................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040011(GSM532896)
G529T. (cervix)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040031(GSM532916)
G013T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040040(GSM532925)
G612N. (cervix)
SRR040041(GSM532926)
G612T. (cervix)
SRR040030(GSM532915)
G013N. (cervix)
GSM532877(GSM532877)
G691N. (cervix)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR040028(GSM532913)
G026N. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
GSM532884(GSM532884)
G871T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR040012(GSM532897)
G648N. (cervix)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................GCCCAGTCACTTGCCTTAG................................................................................................................................................................................... 191.000.00---------------------------1.00----------------------------------
.........................................................................................CCCTCTGCATCCCATCCC............................................................................................................................................... 181.000.00-------------------------------------------------1.00------------
...................................................................................................................................................................CACAGCAGGGCCCTGATCAC................................................................... 201.000.00----------------------------------------------1.00---------------