ID: uc009vmh.1_intron_11_0_chr1_7870628_f.5p
GENE: PER3(12)
chr1:7870578-7870827+


(1)
AGO2.ip
(1)
BRAIN
(2)
BREAST
(4)
CELL-LINE
(1)
FIBROBLAST
(4)
LIVER
(2)
OTHER
(5)
SKIN
(1)
XRN.ip

Sense strand
ATCATCATTCAAGCCAGTGACGGGGACACGCACAGAACCGAATGGTGGTGGTGAGTCAGCGAATGGTGGTGGTGAGTCAGCCGGCAGCCCCAAGGATCTCCTTCCATGGGCTGTCACTCTCTGCATAGACGTCATGTATGTGATTCGTGAGCATAAAGTCATGACCCTGTGTTGCTGCTTTTCATATTTCTTGATTTGCCTAGATAGCAATAGTAATAGCAATAGTAGTAATAATAATGGCAGCAACAAA
..................................................(((((.((((((((((.(((.((((.......((((((((...(((......)))..))))))))......(((...((.(((((....)))))))....))).....)))).))))))).))))))...))))).................................................................
..................................................51............................................................................................................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189785SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR189787SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
...........................................................................................................................................................................TTGCTGCTTTTCATATTG.............................................................18153.008.0032.0021.00---------------------
...........................................................................................................................................................................TTGCTGCTTTTCATATT..............................................................1718.008.004.004.00---------------------
...........................................................CGAATGGTGGTGGTGAATGT...........................................................................................................................................................................204.000.00--4.00--------------------
.....................GGGGACACGCACAGAAC....................................................................................................................................................................................................................1712.002.00-----2.00-----------------
.......................................GAATGGTGGTGGTGAATG.................................................................................................................................................................................................182.000.00--2.00--------------------
...............................ACAGAACCGAATGGTGGTGGTGAGTCAGCG.............................................................................................................................................................................................3011.001.00----1.00------------------
......................................................................................................................................................................................................................AATAGCAATAGTAGTAGATT................201.000.00------------1.00----------
.....................................................................................................................................................................................................................................AATAATAATGGCAGCAACA..1911.001.00--1.00--------------------
.......TTCAAGCCAGTGACGGGGACACG............................................................................................................................................................................................................................2311.001.00----------1.00------------
..........................CACGCACAGAACCGAATG..............................................................................................................................................................................................................1811.001.00-------------1.00---------
.......................................................................GTGAGTCAGCCGGCAGCCCCAAGG...........................................................................................................................................................2411.001.00--1.00--------------------
......................................................................................................TCCATGGGCTGTCACTCTCTGCATAGACGT......................................................................................................................3011.001.00--1.00--------------------
...............AGTGACGGGGACACGCACAG.......................................................................................................................................................................................................................2011.001.00---------1.00-------------
..........AAGCCAGTGACGGGGACACGCACAG.......................................................................................................................................................................................................................2511.001.00--1.00--------------------
..............................................................................................................................AGACGTCATGTATGTGATTCGTGAGC..................................................................................................2611.001.00-------1.00---------------
...............AGTGACGGGGACACGCACA........................................................................................................................................................................................................................1911.001.00--1.00--------------------
.TCATCATTCAAGCCAGTGCTA....................................................................................................................................................................................................................................211.000.001.00----------------------
....................................ACCGAATGGTGGTGGT......................................................................................................................................................................................................1611.001.00------------------1.00----
..............................................................................................................CTGTCACTCTCTGCATAGACGTCATGTA................................................................................................................2811.001.00--------1.00--------------
..............................................................................................GATCTCCTTCCATGGGCTGTC.......................................................................................................................................2111.001.00----1.00------------------
............................................................................................AGGATCTCCTTCCATGGGCTGTCACTCCTGC...............................................................................................................................311.000.00----------------1.00------
..............CAGTGACGGGGACACGCACA........................................................................................................................................................................................................................2011.001.00---1.00-------------------
..........................................................................................................................GCATAGACGTCATGTATGTGATTCGTGAGCATAA..............................................................................................3411.001.00--------------------1.00--
......................GGGACACGCACAGAACC...................................................................................................................................................................................................................1711.001.00-------------------1.00---
...........AGCCAGTGACGGGGACACGCACAGAA.....................................................................................................................................................................................................................2611.001.00---1.00-------------------
..........AAGCCAGTGACGGGGACACGCACA........................................................................................................................................................................................................................2411.001.00--1.00--------------------
....................................ACCGAATGGTGGTGGTGAGTCAGCGAATGGTGG.....................................................................................................................................................................................3311.001.00----1.00------------------
..........AAGCCAGTGACGGGGACACGCAC.........................................................................................................................................................................................................................2311.001.00--1.00--------------------
.......................................................................................................CCATGGGCTGTCACTCTCTGCATAGACG.......................................................................................................................2811.001.00---1.00-------------------
.........................................................................................................ATGGGCTGTCACTCTCTGCATAGACG.......................................................................................................................2611.001.00---1.00-------------------
.........................................................................................................ATGGGCTGTCACTCTCTGCATAGACGTCA....................................................................................................................2911.001.00--1.00--------------------
..............................CACAGAACCGAATGG.............................................................................................................................................................................................................1511.001.00-----------------1.00-----
.............CCAGTGACGGGGACACGGA..........................................................................................................................................................................................................................191.000.00--1.00--------------------
..........AAGCCAGTGACGGGGACACGCATA........................................................................................................................................................................................................................241.000.00--1.00--------------------
........................................................................................................................................TATGTGATTCGTGAGCATA...............................................................................................1911.001.00--1.00--------------------
............................................................................................................................................................................TGCTGCTTTTCATATTG.............................................................1770.710.140.290.43---------------------
...........................................................................................................................................................................TTGCTGCTTTTCATAT...............................................................1690.330.330.220.11---------------------
..........................................................................................................TGGGCTGTCACTCTCTG...............................................................................................................................1730.330.33-----0.33-----------------
.................................................................................................................................................................................................................ATAGTAATAGCAATAGTA.......................1840.250.25--0.25--------------------
............................................................................................................................................................................TGCTGCTTTTCATATT..............................................................1670.140.140.14----------------------
............................................................................................................................................................................................TCTTGATTTGCCTAG...............................................1580.120.12----------------------0.12

Antisense strand
ATCATCATTCAAGCCAGTGACGGGGACACGCACAGAACCGAATGGTGGTGGTGAGTCAGCGAATGGTGGTGGTGAGTCAGCCGGCAGCCCCAAGGATCTCCTTCCATGGGCTGTCACTCTCTGCATAGACGTCATGTATGTGATTCGTGAGCATAAAGTCATGACCCTGTGTTGCTGCTTTTCATATTTCTTGATTTGCCTAGATAGCAATAGTAATAGCAATAGTAGTAATAATAATGGCAGCAACAAA
..................................................(((((.((((((((((.(((.((((.......((((((((...(((......)))..))))))))......(((...((.(((((....)))))))....))).....)))).))))))).))))))...))))).................................................................
..................................................51............................................................................................................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189785SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR189787SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
........................................................................................................................CTGCATAGACGTCATGTAGTT............................................................................................................. 212.000.00------2.00----------------
.....................................................................................................................................................................CCTGTGTTGCTGCTTTTAT.................................................................. 191.000.00-----------1.00-----------
.............................................................................................................................................................................................................................ATAGTAGTAATAATAATAAG......... 201.000.00---------------1.00-------
.....................................................AGTCAGCGAATGGTGGTGTA................................................................................................................................................................................. 201.000.00--------------1.00--------
....................................................................................CAGCCCCAAGGATCTCCTTGGTC............................................................................................................................................... 231.000.00-------1.00---------------
........................................................................................................................................................................................TATTTCTTGATTTGCCATG............................................... 191.000.001.00----------------------
...........................................................................TGGGGCTGCCGGCTGAC.............................................................................................................................................................. 1720.500.50---------------------0.50-