ID: uc009vkr.2_intron_11_0_chr1_1640392_r
GENE: (8)
chr1:1640342-1640526-


(1)
AGO2.ip 		(2)
B-CELL 		(5)
BRAIN 		(2)
BREAST 		(29)
CELL-LINE 		(3)
CERVIX 		(1)
HEART 		(2)
HELA 		(4)
LIVER 		(2)
OTHER 		(12)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GGACATCAGCGACAGCGAGAGGAAGACCAGCTCGGCCGAGTCCTCGTCAGGTACCTGGAACCGCCTGGCCAAGGCCTTGACCACTGCTGCCCAGGAAGGCCCAGGTTCACCCTCTGCTCTGCTGTCTTTCTACAGCGGAATCAGGCTCAGGTTCTGAGGAAGAAGAGGAGGAGGAGGAAGAGGAG
....................................................((((((..((.(((((....(((..........)))..)))))..)).))))))...............................................................................
..................................................51..............................................................115....................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR037935(GSM510473)
293cand3. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532880(GSM532880)
G659T. (cervix)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038862(GSM458545)
MM472. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR040016(GSM532901)
G645N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335SRR029130(GSM416759)
DLD2. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR029125(GSM416754)
U2OS. (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
.................................................................................................................................................................GAAGAGGAGGAGGAGGAAGA....20014.0014.00-4.005.005.00------------------------------------------------------------
..................................................GTACCTGGAACCGCCTGGATC..................................................................................................................2126.001.506.00---------------------------------------------------------------
..................................................GTACCTGGAACCGCCTGGCC...................................................................................................................2025.005.00-1.00---------1.001.00---0.50------------------------------0.50---0.50---0.50--------
..................................................GTACCTGGAACCGCCTGGCCAATC...............................................................................................................2424.000.504.00---------------------------------------------------------------
..................................................................................................................................................................AAGAGGAGGAGGAGGAAGA....1903.003.00-2.001.00-------------------------------------------------------------
..................................................GTACCTGGAACCGCCTGGCCAAGA...............................................................................................................243.000.00----3.00-----------------------------------------------------------
..................................................GTACCTGGAACCGCCTGGCCATT................................................................................................................2323.002.00---------2.00--------1.00---------------------------------------------
..................................................GTACCTGGAACCGCCTGGCCAAT................................................................................................................2322.000.50-------------1.00-------------------1.00------------------------------
.........................................................................................CCCAGGAAGGCCCAGGTTCACT..........................................................................2222.001.00------1.00----------------1.00----------------------------------------
..................................................GTACCTGGAACCGCCTGGCAATA................................................................................................................2322.001.00--------2.00-------------------------------------------------------
..................................................GTACCTGGAACCGCCTGGCCA..................................................................................................................2122.002.00--0.50-------------------------------------0.50-----------------0.50--0.50--
..................................................GTACCTGGAACCGCCTGGCCAGT................................................................................................................2322.002.00-------2.00--------------------------------------------------------
..................................................GTACCTGGAACCGCCTGGCCATC................................................................................................................2322.002.002.00---------------------------------------------------------------
..................................................GTACCTGGAACCGCCTGG.....................................................................................................................1821.501.50-----------0.500.50---0.50-----------------------------------------------
.....................GAAGACCAGCTCGGCCGAGTCCT.............................................................................................................................................2321.501.50---------------1.50------------------------------------------------
.........................................................................................CCCAGGAAGGCCCAGGTTCACCCT........................................................................2421.501.50-----------------1.00-----------------------0.50----------------------
..................................................GTACCTGGAACCGCCTGGC....................................................................................................................1921.001.00-----------0.50--------------------------------0.50-------------------
................................................................................................................................................................AGAAGAGGAGGAGGAGGAAG.....2001.001.00-1.00--------------------------------------------------------------
.....................................................................................................................................................................AGGAGGAGGAGGAAGAGGCCC211.000.00-----1.00----------------------------------------------------------
..................................................GTACCTGGAACCGCCTGGCAATT................................................................................................................2321.001.00-------------------------------1.00--------------------------------
...............................................................................................................................................................AAGAAGAGGAGGAGGAGGACACG...231.000.00-----1.00----------------------------------------------------------
............................................................................................................................................................AGGAAGAAGAGGAGGAGG...........1801.001.00-1.00--------------------------------------------------------------
..................................................GTACCTGGAACCGCCTGGCCAATT...............................................................................................................2421.000.50-------------------------------------1.00--------------------------
..................................................................................................................................................................AAGAGGAGGAGGAGGAAGAGCGAC241.000.00----------------------1.00-----------------------------------------
......................AAGACCAGCTCGGCCGAGTCCTCGCCAG.......................................................................................................................................281.000.00-----1.00----------------------------------------------------------
..................................................GTACCTGGAACCGCCTGGCCAAA................................................................................................................2321.000.50---------------------1.00------------------------------------------
..........................................................................................................................................................TGAGGAAGAAGAGGAGGTGCC..........211.000.00---------------------------1.00------------------------------------
..................................................................................................................................................................AAGAGGAGGAGGAGGAAGTT...201.000.00----------1.00-----------------------------------------------------
..................................................GTACCTGGAACCGCCTGGCATAA................................................................................................................2321.001.00--------------------------------1.00-------------------------------
.............................................................................................................................................................GGAAGAAGAGGAGGAGGAGGA.......2101.001.00-1.00--------------------------------------------------------------
.............................................................................................................................................................GGAAGAAGAGGAGGAGGAGGAA......2201.001.00--1.00-------------------------------------------------------------
.........................................................................................CCCAGGAAGGCCCAGGTTCAC...........................................................................2121.001.00--------------0.50------------------------------0.50------------------
........................GACCAGCTCGGCCGAGTCCTCGTCAGCAGA...................................................................................................................................301.000.00------------------------------1.00---------------------------------
................................................................................................................................................................AGAAGAGGAGGAGGAGGAAGACG..231.000.00-----------------------------1.00----------------------------------
.........................................................................................CCCAGGAAGGCCCAGGTTCACCC.........................................................................2321.001.00--------------1.00-------------------------------------------------
.........................................................................................CCCAGGAAGGCCCAGGTTCT............................................................................2021.001.00-----------------------------------1.00----------------------------
..................................GCCGAGTCCTCGTCAG.......................................................................................................................................1621.001.00-0.50----------------------------------------------------------0.50---
...............................................................................................................................................................AAGAAGAGGAGGAGGAGTTT......201.000.00----------1.00-----------------------------------------------------
.........................................................................................CCCAGGAAGGCCCAGGTTAA............................................................................201.000.00----------------------------------1.00-----------------------------
.........................................................................................CCCAGGAAGGCCCAGGTTC.............................................................................1921.001.00-------------------------------------------0.50----------0.50---------
..................................................GTACCTGGAACCGCCTGGCA...................................................................................................................2021.001.00------------------------------------1.00---------------------------
..................................................GTACCTGGAACCGCCTGGCCATTT...............................................................................................................2421.002.00------------------------1.00---------------------------------------
.............................................................................................................................................................GGAAGAAGAGGAGGAGGAGGATTT....2401.001.00--------------------1.00-------------------------------------------
.........................................................................................................................................................CTGAGGAAGAAGAGGAGTTTC...........211.000.00--------------------------------------1.00-------------------------
.................................................................................................................................................................GAAGAGGAGGAGGAGGAAGTAA..221.000.00----------------------------1.00-----------------------------------
........................................................................................................................................................TCTGAGGAAGAAGAGGAGGAGGAGGAAG.....2820.500.50----------------------------------------------0.50-----------------
........................................................................................................................................................TCTGAGGAAGAAGAGGAGGAGGAGGAAGA....2920.500.50---------------------------------------0.50------------------------
........................................................................................................................................................TCTGAGGAAGAAGAGGAGGAGGAGGA.......2620.500.50----------------------------------------------------0.50-----------
.....TCAGCGACAGCGAGAGGAAGACCAGCTCGGC.....................................................................................................................................................3120.500.50------------------------------------------0.50---------------------
..................................................GTACCTGGAACCGCCTGGCCAA.................................................................................................................2220.500.50--------------------------------------------------------0.50-------
......................................................................................................................................GCGGAATCAGGCTCAGGT.................................1820.500.50--------------------------------------------------0.50-------------
................................................................................................................TCTGCTCTGCTGTCTTTCTACA...................................................2220.500.50-----------------------------------------------------0.50----------
.........................................................................................CCCAGGAAGGCCCAGGTTCACC..........................................................................2220.500.50-------0.50--------------------------------------------------------
.........................................................................................CCCAGGAAGGCCCAGGTTCA............................................................................2020.500.50-------------0.50--------------------------------------------------
.............AGCGAGAGGAAGACCAGCTCGGCCG...................................................................................................................................................2520.500.50---------------------------------------------------------0.50------
..................................................................................................................................................TCAGGTTCTGAGGAAGAAGAGGAGG..............2520.500.50------0.50---------------------------------------------------------
.................AGAGGAAGACCAGCTCGGC.....................................................................................................................................................1920.500.50-----------------------------------------------------------0.50----
........................................................................................................................................................TCTGAGGAAGAAGAGGAGGA.............2040.250.25----------------0.25-----------------------------------------------
.........................................................................................................................................................CTGAGGAAGAAGAGGAGGA.............1990.220.22----0.22-----------------------------------------------------------

Antisense strand
GGACATCAGCGACAGCGAGAGGAAGACCAGCTCGGCCGAGTCCTCGTCAGGTACCTGGAACCGCCTGGCCAAGGCCTTGACCACTGCTGCCCAGGAAGGCCCAGGTTCACCCTCTGCTCTGCTGTCTTTCTACAGCGGAATCAGGCTCAGGTTCTGAGGAAGAAGAGGAGGAGGAGGAAGAGGAG
....................................................((((((..((.(((((....(((..........)))..)))))..)).))))))...............................................................................
..................................................51..............................................................115....................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR037935(GSM510473)
293cand3. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532880(GSM532880)
G659T. (cervix)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038862(GSM458545)
MM472. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR040016(GSM532901)
G645N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335SRR029130(GSM416759)
DLD2. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR029125(GSM416754)
U2OS. (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
...............................................CAGGTACCTGGAACCGCG........................................................................................................................ 181.000.00--------------------------1.00-------------------------------------
.GACATCAGCGACAGCGG....................................................................................................................................................................... 171.000.00-------------------1.00--------------------------------------------
..................................................................................................................................................................AAGAGGAGGAGGAGGAAGAC... 201.000.00-------------------------1.00--------------------------------------
..............................................................................................................AGACAGCAGAGCAGAGG.......................................................... 1760.670.67------0.67---------------------------------------------------------
..............................................................................................................AAGACAGCAGAGCAGAGG......................................................... 1840.500.50------0.50---------------------------------------------------------
...................................................................................GTGAACCTGGGCCTTCCTGGGCAGCAG........................................................................... 2720.500.50-------------------------------------------------0.50--------------
.........................ACCTGACGAGGACTCGGCCGAGCTGGT..................................................................................................................................... 2720.500.50------------------------------------------------0.50---------------
.......................................................................................................................................CCTGAGCCTGATTCCG.................................. 1630.330.33--------------------------------------------------------------0.33-
.........................................................................AGCAGTGGTCAAGGC................................................................................................. 1590.110.11---------------------------------------------------------------0.11