uc004fuu.2_intron_1_0_chrY_24027300

CGTGATTATGGTCATTCTAGTTGGGATGAACATTCCTCTAGAGGATATAGGTACTAACATGTTATCTGGATTTATCAAATGGATTTCTTAAATTGTTCATTCTGAAATTGAAAAGACTTTTTTTTTTTTCAATTTAGTTATCATGATGGCTACGGTGAGGCCCTTGGTAGAGATCATTCTGAACATC ....................................................................(((......(((((((..........)))))))...((((((((((((.......))))))))))))....)))............................................. .............................................................62...............................................................................143..........................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189785	SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line)	SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast)	SRR189782	SRR343335	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	GSM532880(GSM532880) G659T. (cervix)
....................................................................................................................CTTTTTTTTTTTTCAATTTCTAG................................................	23		48.00	0.00	21.00	17.00	6.00	4.00	-	-	-	-	-	-	-	-	-
...................................................................................................................ACTTTTTTTTTTTTCAATTTATAG................................................	24		24.00	0.00	9.00	12.00	1.00	2.00	-	-	-	-	-	-	-	-	-
...................................................................................................................ACTTTTTTTTTTTTCAATTTATAT................................................	24		5.00	0.00	3.00	2.00	-	-	-	-	-	-	-	-	-	-	-
....................................................................................................................CTTTTTTTTTTTTCAATTTTTAG................................................	23		3.00	0.00	1.00	-	1.00	1.00	-	-	-	-	-	-	-	-	-
....................................................................................................................CTTTTTTTTTTTTCAATTTCTAA................................................	23		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-
....................................................................................................................CTTTTTTTTTTTTCAATTTCCAG................................................	23		2.00	0.00	-	1.00	1.00	-	-	-	-	-	-	-	-	-	-
....................................................................................................................CTTTTTTTTTTTTCAATTTAAAG................................................	23		2.00	0.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-
....................................................................................................................CTTTTTTTTTTTTCAATTTCTA.................................................	22		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................ACTTTTTTTTTTTTCAACCAG...................................................	21		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................ACTTTTTTTTTTTTCAATTTATATG...............................................	25		2.00	0.00	-	-	2.00	-	-	-	-	-	-	-	-	-	-
...................................................................................................................ACTTTTTTTTTTTTCAACCTT...................................................	21		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	1.00	-
....................................................................................................................CTTTTTTTTTTTTCAATAAAG..................................................	21		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................ACTTTTTTTTTTTTCAATCAAG..................................................	22		1.00	0.00	-	-	-	-	-	-	-	-	-	-	1.00	-	-
....................................................................................................................CTTTTTTTTTTTTCAATTTTCTG................................................	23		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-
...................................................................................................................ACTTTTTTTTTTTTCAATTTTTT.................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
....................................................................................................................CTTTTTTTTTTTTCAATTTAATG................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................AAGACTTTTTTTTTTTTCATTCT....................................................	23		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-
.................................................................................................................AGACTTTTTTTTTTTTCAACT.....................................................	21		1.00	0.00	-	-	-	-	-	-	1.00	-	-	-	-	-	-
....................................................................................................................CTTTTTTTTTTTTCAATTTTAAG................................................	23		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-
..................................................................TGGATTTATCAAATGCAT.......................................................................................................	18		1.00	0.00	-	-	-	-	-	-	-	-	1.00	-	-	-	-
...................................................................................................................ACTTTTTTTTTTTTCAATTTATA.................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
......................................................................................................................TTTTTTTTTTTCAATTTACATT...............................................	22		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-
...................................................................................................................ACTTTTTTTTTTTTCAACCCG...................................................	21		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-
...................................................................................................................ACTTTTTTTTTTTTCAATCAG...................................................	21		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-
...................................................................................................................ACTTTTTTTTTTTTCAATTTCCAG................................................	24		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-
......................................................................................................................TTTTTTTTTTTCAATTTAAGG................................................	21		1.00	0.00	-	-	-	-	-	-	1.00	-	-	-	-	-	-
...................................................................................................................ACTTTTTTTTTTTTCAATTTTAA.................................................	23		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-
....................................................................................................................CTTTTTTTTTTTTCAATTTTTTG................................................	23		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-
...................................................................................................................ACTTTTTTTTTTTTCAATTTTTTT................................................	24		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-
...............................................................................................................AAAGACTTTTTTTTTTTTCAAGAGC...................................................	25		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-
....................................................................................................................CTTTTTTTTTTTTCAATTTCTAT................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................ACTTTTTTTTTTTTCAATTTTCG.................................................	23		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-	-
...............................................................................................................AAAGACTTTTTTTTTTTTCA........................................................	20	5	0.20	0.20	-	-	-	-	-	-	-	-	-	-	-	-	0.20

CGTGATTATGGTCATTCTAGTTGGGATGAACATTCCTCTAGAGGATATAGGTACTAACATGTTATCTGGATTTATCAAATGGATTTCTTAAATTGTTCATTCTGAAATTGAAAAGACTTTTTTTTTTTTCAATTTAGTTATCATGATGGCTACGGTGAGGCCCTTGGTAGAGATCATTCTGAACATC
....................................................................(((......(((((((..........)))))))...((((((((((((.......))))))))))))....))).............................................
.............................................................62...............................................................................143..........................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189785

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)

SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)

SRR189782

SRR343335

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

GSM532880(GSM532880)
G659T. (cervix)

....................................................................................................................CTTTTTTTTTTTTCAATTTCTAG................................................

48.00

0.00

21.00

17.00

6.00

4.00

...................................................................................................................ACTTTTTTTTTTTTCAATTTATAG................................................

24.00

0.00

9.00

12.00

1.00

2.00

...................................................................................................................ACTTTTTTTTTTTTCAATTTATAT................................................

5.00

0.00

3.00

2.00

....................................................................................................................CTTTTTTTTTTTTCAATTTTTAG................................................

3.00

0.00

1.00

....................................................................................................................CTTTTTTTTTTTTCAATTTCTAA................................................

2.00

0.00

2.00

....................................................................................................................CTTTTTTTTTTTTCAATTTCCAG................................................

2.00

0.00

1.00

....................................................................................................................CTTTTTTTTTTTTCAATTTAAAG................................................

2.00

0.00

1.00

....................................................................................................................CTTTTTTTTTTTTCAATTTCTA.................................................

2.00

0.00

2.00

...................................................................................................................ACTTTTTTTTTTTTCAACCAG...................................................

2.00

0.00

1.00

...................................................................................................................ACTTTTTTTTTTTTCAATTTATATG...............................................

2.00

0.00

2.00

...................................................................................................................ACTTTTTTTTTTTTCAACCTT...................................................

1.00

0.00

1.00

....................................................................................................................CTTTTTTTTTTTTCAATAAAG..................................................

1.00

0.00

1.00

...................................................................................................................ACTTTTTTTTTTTTCAATCAAG..................................................

1.00

0.00

1.00

....................................................................................................................CTTTTTTTTTTTTCAATTTTCTG................................................

1.00

0.00

1.00

...................................................................................................................ACTTTTTTTTTTTTCAATTTTTT.................................................

1.00

0.00

1.00

....................................................................................................................CTTTTTTTTTTTTCAATTTAATG................................................

1.00

0.00

1.00

................................................................................................................AAGACTTTTTTTTTTTTCATTCT....................................................

1.00

0.00

1.00

.................................................................................................................AGACTTTTTTTTTTTTCAACT.....................................................

1.00

0.00

1.00

....................................................................................................................CTTTTTTTTTTTTCAATTTTAAG................................................

1.00

0.00

1.00

..................................................................TGGATTTATCAAATGCAT.......................................................................................................

1.00

0.00

1.00

...................................................................................................................ACTTTTTTTTTTTTCAATTTATA.................................................

1.00

0.00

1.00

......................................................................................................................TTTTTTTTTTTCAATTTACATT...............................................

1.00

0.00

1.00

...................................................................................................................ACTTTTTTTTTTTTCAACCCG...................................................

1.00

0.00

1.00

...................................................................................................................ACTTTTTTTTTTTTCAATCAG...................................................

1.00

0.00

1.00

...................................................................................................................ACTTTTTTTTTTTTCAATTTCCAG................................................

1.00

0.00

1.00

......................................................................................................................TTTTTTTTTTTCAATTTAAGG................................................

1.00

0.00

1.00

...................................................................................................................ACTTTTTTTTTTTTCAATTTTAA.................................................

1.00

0.00

1.00

....................................................................................................................CTTTTTTTTTTTTCAATTTTTTG................................................

1.00

0.00

1.00

...................................................................................................................ACTTTTTTTTTTTTCAATTTTTTT................................................

1.00

0.00

1.00

...............................................................................................................AAAGACTTTTTTTTTTTTCAAGAGC...................................................

1.00

0.00

1.00

....................................................................................................................CTTTTTTTTTTTTCAATTTCTAT................................................

1.00

0.00

1.00

...................................................................................................................ACTTTTTTTTTTTTCAATTTTCG.................................................

1.00

0.00

1.00

...............................................................................................................AAAGACTTTTTTTTTTTTCA........................................................

0.20