ID: uc004fsu.1_intron_0_0_chrY_15016326_f.3p
GENE: DDX3Y(1)
chrY:15016646-15016895+


(2)
B-CELL 		(1)
BRAIN 		(17)
CELL-LINE 		(1)
CERVIX 		(5)
HEART 		(1)
KIDNEY 		(2)
LIVER 		(2)
OTHER 		(10)
SKIN

Sense strand
CGATAAAGGGATTGGGTGGTGGTGGTGGAGGGGTGGAGCCAACGATTACGCACGTTGTGCGTGCTGTCGTATAGCTGTGGGAGGGGCCATATTACCGCGTAGGCTAACCAGTGCGCTTAATAGCTGTAGGTCCAGTGTAAGAGTTCCGCTATTCGGTCTCACACCTACAGTGGACTACCCGATTTTTCGCTTCTCTTCAGGGATGAGTCATGTGGTGGTGAAAAATGACCCTGAACTGGACCAGCAGGTG
.........................................................................................(((((.((((..((....))..))))..)))))...(((.(((((.((((.(((..(((.....))).))).....)))).))))))))........................................................................
........................................................................................89................................................................................................187.............................................................
SizePerfect hitTotal NormPerfect NormSRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189785SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038860(GSM458543)
MM426. (cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359188(GSM359188)
HepG2_2pM_2. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM532880(GSM532880)
G659T. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM956925PAZD5SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
.....................................................................................................................................................................TACAGTGGACTACCCGAT...................................................................1818.008.00-8.00------------------------------------------
..................................................................................................................................................................ACCTACAGTGGACTACCCGATTTTT...............................................................2514.004.003.00----1.00--------------------------------------
....................GGTGGTGGAGGGGTGGGGCG..................................................................................................................................................................................................................204.000.00---4.00----------------------------------------
.....................................................................................................................................................................TACAGTGGACTACCCGATTTTT...............................................................2212.002.00--------------2.00-----------------------------
.............................................................................................................................................................CTCACACCTACAGTGGACTAC........................................................................2112.002.00--1.00------------------------------1.00----------
.................................................................................................................................................CCGCTATTCGGTCTCACACCTACAGTGGACTACCCG.....................................................................3612.002.00------------1.00-----1.00-------------------------
..................................................................................................................................................................ACCTACAGTGGACTACCCGATTTT................................................................2412.002.001.001.00------------------------------------------
..........................................................................................ATTACCGCGTAGGCTAACCAGTGCGCTTAATAG...............................................................................................................................3312.002.00---------1.00-------1.00--------------------------
...................................................................................................................................................GCTATTCGGTCTCACACCTACAGTGGACTACCCGAT...................................................................3612.002.00------------1.00-----1.00-------------------------
..................................................................................................................................................................ACCTACAGTGGACTACCCG.....................................................................1912.002.001.00-----------------------1.00-------------------
........................................................................................ATATTACCGCGTAGGCTAACCAGTGCGCTTAA..................................................................................................................................3212.002.00------------------------------1.00----1.00--------
....................................................................................................................................................................CTACAGTGGACTACCCGAT...................................................................1912.002.001.00-------1.00-----------------------------------
.............................................................................................ACCGCGTAGGCTAACCAGTGC........................................................................................................................................2111.001.00----1.00---------------------------------------
.........................................................................................................................................................CGGTCTCACACCTACAGTG..............................................................................1911.001.00--------1.00-----------------------------------
.......................................................................................................CTAACCAGTGCGCTTAATAG...............................................................................................................................2011.001.00-------------------------------------1.00------
...................................................................................................................................................................................................................................ACCCTGAACTGGACCAGCAGC..211.000.00----------------------------------------1.00---
....................................................................................................................................................................CTACAGTGGACTACCCGA....................................................................1811.001.00-----------1.00--------------------------------
...............................................................................................................................................................CACACCTACAGTGGACTA.........................................................................1811.001.00-1.00------------------------------------------
........................................................................................................................................................TCGGTCTCACACCTACAGTGGA............................................................................2211.001.00----------1.00---------------------------------
.......................................................................................................................................................TTCGGTCTCACACCTACAGTGG.............................................................................2211.001.00---------------1.00----------------------------
.....................................................................................................................................AGTGTAAGAGTTCCGCTATTCGGTCTCACACCTACA.................................................................................3611.001.00-----------------1.00--------------------------
.......................................................................................................................................................TTCGGTCTCACACCTACAG................................................................................1911.001.00---------------------------1.00----------------
........................................................................................ATATTACCGCGTAGGCTAACCAGTG.........................................................................................................................................2511.001.00--------------------1.00-----------------------
.............GGGTGGTGGTGGTGGAC............................................................................................................................................................................................................................171.000.00-------------------------1.00------------------
.......................................................................................CATATTACCGCGTAGGCTAACCAGTGCGCTT....................................................................................................................................3111.001.00---------1.00----------------------------------
.....................................................................................................................................................................................................................GGTGGTGAAAAATGACCCTGAACTGGACCAGC.....3211.001.00--1.00-----------------------------------------
...........................................................................................................................................................GTCTCACACCTACAGTGG.............................................................................1811.001.00-----------1.00--------------------------------
..................................................................................................................................................CGCTATTCGGTCTCACACCTACAG................................................................................2411.001.00---------------1.00----------------------------
..................................................................................................................GCTTAATAGCTGTAGGT.......................................................................................................................1711.001.00-----------------------1.00--------------------
......................................................................................................................................................................ACAGTGGACTACCCGATTTTT...............................................................2111.001.00-----1.00--------------------------------------
..................................................................................................................................................................ACCTACAGTGGACTACCCGATT..................................................................2211.001.001.00-------------------------------------------
......................................................................................................................................................ATTCGGTCTCACACCTAC..................................................................................1811.001.00-----1.00--------------------------------------
......................................................................................................................................................................................................................................CTGAACTGGACCAGCAG...1711.001.00-------1.00------------------------------------
....................................................................................................................................................CTATTCGGTCTCACACCTACAG................................................................................2211.001.00-------1.00------------------------------------
........................................................................................................................................GTAAGAGTTCCGCTATTCGG..............................................................................................2011.001.00----1.00---------------------------------------
...................TGGTGGTGGAGGGGTGGCTC...................................................................................................................................................................................................................201.000.00----------------1.00---------------------------
.............................................................................................................................GTAGGTCCAGTGTAAGA............................................................................................................1711.001.00--------------------------------------1.00-----
......................................................................................................................................................ATTCGGTCTCACACCTACAGTG..............................................................................2211.001.00----1.00---------------------------------------
.......................................................................................................................................................................................................................................TGAACTGGACCAGCAGCTT191.000.00---------------------------------------1.00----
...........................................................................................................................................................GTCTCACACCTACAGTGGACTAC........................................................................2311.001.001.00-------------------------------------------
......................................................................................................................................................................ACAGTGGACTACCCGATTT.................................................................1911.001.001.00-------------------------------------------
.....................................................................................................................................AGTGTAAGAGTTCCGCTAT..................................................................................................1911.001.00---------1.00----------------------------------
..................................................................................................GTAGGCTAACCAGTGC........................................................................................................................................1611.001.00----1.00---------------------------------------
.....................................................................................................................................................................TACAGTGGACTACCCGATTTTTC..............................................................2311.001.00--1.00-----------------------------------------
..................................................................................................................................................................ACCTACAGTGGACTACCCGATTT.................................................................2311.001.001.00-------------------------------------------
...............................................................................................................................................................CACACCTACAGTGGACTACCCGAT...................................................................2411.001.00--------------------------------1.00-----------
..........................................................................................................................................................................................................................TGAAAAATGACCCTGAACTGGACC........2411.001.00--1.00-----------------------------------------
...................................................................................................................CTTAATAGCTGTAGGTCCAGTG.................................................................................................................2211.001.00----------------------1.00---------------------
............................................................................................................................................................................................................................AAAAATGACCCTGAACTGGACC........2211.001.00----------1.00---------------------------------
...........................................................................................................................................................................................................................GAAAAATGACCCTGAACTGGACCAGCAG...2811.001.00------1.00-------------------------------------
..................................................................................................................GCTTAATAGCTGTAGGTCCAGTG.................................................................................................................2311.001.00-------1.00------------------------------------
...............GTGGTGGTGGTGGAGGGGCGGC.....................................................................................................................................................................................................................221.000.00-----------------------------1.00--------------
.....................................................................................................................................................................TACAGTGGACTACCCGATT..................................................................1911.001.00-------------------------------1.00------------
..........................................................................................................................................................................TGGACTACCCGATTTTTCGC............................................................2011.001.00------1.00-------------------------------------
....................................................................................................................................................CTATTCGGTCTCACACCTACAGTGG.............................................................................2511.001.00------1.00-------------------------------------
.....................................................................................................................................................................TACAGTGGACTACCCGATTT.................................................................2011.001.00------------------------------------1.00-------
.................................................................................................................................................................CACCTACAGTGGACTACCCGATTTTT...............................................................2611.001.001.00-------------------------------------------
........................................................................................................................................................TCGGTCTCACACCTACAGTG..............................................................................2011.001.00-------------------1.00------------------------
..................................................................................................................................................................ACCTACAGTGGACTACCC......................................................................1811.001.00--------1.00-----------------------------------
...................................................................................................................................................................................................................GTGGTGGTGAAAAATGACCCTGAACTGGACC........3111.001.00---------------------1.00----------------------
.......................................................................................................................ATAGCTGTAGGTCCAGTGTA...............................................................................................................2011.001.00----------------------------------1.00---------
..................................................................................................................................................................ACCTACAGTGGACTACCCGATTTG................................................................2411.001.001.00-------------------------------------------
....................................................................................................................TTAATAGCTGTAGGTCC.....................................................................................................................1720.500.50-----------------------------------------0.50--
...................................................................................................................................................................................................TTCAGGGATGAGTCATGTG....................................1940.250.25------------------------------------------0.25-
.....................................................................................................................................................................................................CAGGGATGAGTCATGTGG...................................1850.200.20----------0.20---------------------------------
........................................................................................................................................................................................................................................GAACTGGACCAGCAG...1580.120.12-------------------------------------------0.12

Antisense strand
CGATAAAGGGATTGGGTGGTGGTGGTGGAGGGGTGGAGCCAACGATTACGCACGTTGTGCGTGCTGTCGTATAGCTGTGGGAGGGGCCATATTACCGCGTAGGCTAACCAGTGCGCTTAATAGCTGTAGGTCCAGTGTAAGAGTTCCGCTATTCGGTCTCACACCTACAGTGGACTACCCGATTTTTCGCTTCTCTTCAGGGATGAGTCATGTGGTGGTGAAAAATGACCCTGAACTGGACCAGCAGGTG
.........................................................................................(((((.((((..((....))..))))..)))))...(((.(((((.((((.(((..(((.....))).))).....)))).))))))))........................................................................
........................................................................................89................................................................................................187.............................................................
SizePerfect hitTotal NormPerfect NormSRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189785SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038860(GSM458543)
MM426. (cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359188(GSM359188)
HepG2_2pM_2. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM532880(GSM532880)
G659T. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM956925PAZD5SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
...........................................................................................................................................................................................CATGACTCATCCCTGAAGAGAAGCG...................................... 2512.002.00-------------2.00------------------------------
.................................................................................................................................................................................................................ATGTGGTGGTGAAAAATTTT..................... 201.000.00----------------------------1.00---------------
..............................................................................................................................................................................................................................AAATGACCCTGAACTGGAC......... 191.000.00----------------1.00---------------------------
...................................................................................................................................................TCCACTGTAGGTGTGAGACCGAATAGC............................................................................ 2711.001.00--------------------------1.00-----------------