ID: uc004fps.3_intron_0_0_chrY_2089271_r.3p
GENE: (6)
chrY:2089221-2089470-


(4)
BREAST 		(5)
CELL-LINE 		(1)
CERVIX 		(2)
LIVER 		(1)
OTHER 		(4)
SKIN 		(1)
TESTES

Sense strand
TCAGTGCCTGTTGTAAAGAAACCCAACAGCAGAAAAGCTGTGGTTCAGATTGATCACCCAACCTCGCTTTTTGCATACATTTCTCAGTGCAGCTGATGAGTATATTCCACCTGTCCCTGCAGCATCCATGTGAGTCCTGAGACTCCTGTTTCCTGCTCAGAAATTTGACTCATCGTAGCCTTCTTTTCTTCTTCCACCAGACCCCCGATGAAGGAGCGTGGACTTCCATCTACGCAGCAGTCACCCCAGA
.....................................................................................((.((.((.(((((((.........((((....))))........(((((...(((((....)))))..)))))........))))))))).)))).....................................................................
..................................................................................83...................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR189784SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR343334SRR343335TAX577740(Rovira)
total RNA. (breast)		SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR040018(GSM532903)
G701N. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189785SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
.......................................................................................TGCAGCTGATGAGTATGATT...............................................................................................................................................2012.000.00-7.00-5.00--------------------
......................................................................................................TATTCCACCTGTCCCTGCCTGT..............................................................................................................................2212.000.009.00-1.00----1.00-----1.00----------
........................................................................................GCAGCTGATGAGTATGATT...............................................................................................................................................194.000.00-3.00-1.00--------------------
......................................................................................................TATTCCACCTGTCCCG....................................................................................................................................164.000.00----2.002.00------------------
......................................................................................................TATTCCACCTGTCCCGGCC.................................................................................................................................193.000.00--1.00---2.00-----------------
......................................................................................................TATTCCACCTGTCCCGA...................................................................................................................................173.000.00----2.001.00------------------
......................................................................................................TATTCCACCTGTCCCTGCCTGC..............................................................................................................................222.000.001.00------1.00----------------
.......................................................................................................ATTCCACCTGTCCCTGCCTGC..............................................................................................................................211.000.001.00-----------------------
......................................................................................................TATTCCACCTGTCCCTGCCTTT..............................................................................................................................221.000.001.00-----------------------
..................................................................................................................................................................................................CACCAGACCCCCGATCGAT.....................................191.000.00----------------1.00-------
....................................................................................................................................................................................TTCTTTTCTTCTTCCACG....................................................181.000.00---------------1.00--------
......................................................................................................TATTCCACCTGTCCCCCC..................................................................................................................................181.000.00----------1.00-------------
......................................................................................................TATTCCACCTGTCCCTCCA.................................................................................................................................1921.000.50------------1.00-----------
.......................................................................................................ATTCCACCTGTCCCTGCCTGT..............................................................................................................................211.000.00--1.00---------------------
......................................................................................................TATTCCACCTGTCCCTGCCTG...............................................................................................................................211.000.001.00-----------------------
......................................................................................................TATTCCACCTGTCCCTGCCAGT..............................................................................................................................221.000.001.00-----------------------
......................................................................................................TATTCCACCTGTCCCTGCTTGT..............................................................................................................................221.000.001.00-----------------------
.......................................................................................TGCAGCTGATGAGTATGA.................................................................................................................................................181.000.00-1.00----------------------
........................................................................................................................................................CTGCTCAGAAATTTGAC.................................................................................1720.500.50-------------------0.50----
.............................CAGAAAAGCTGTGGTTCAGATTGATC...................................................................................................................................................................................................2620.500.50----------------------0.50-
..................................................................................................................................................TGTTTCCTGCTCAGAAATTTGAC.................................................................................2320.500.50---------------------0.50--
.......................................................................................................................................................................................................GACCCCCGATGAAGGAGCGTG..............................2120.500.50--------0.50---------------
..........................................................................................................................................................................................................CCCCGATGAAGGAGCGTG..............................1820.500.50--------0.50---------------
......................................................................................................TATTCCACCTGTCCCT....................................................................................................................................1620.500.50--------------------0.50---
................................................................CGCTTTTTGCATACATTTCTCAG...................................................................................................................................................................2320.500.50-----------------0.50------
..........................................................................................................................................................................................................................TGGACTTCCATCTACGCAGCAGTC........2420.500.50--------0.50---------------
..............................AGAAAAGCTGTGGTTCAGA.........................................................................................................................................................................................................1930.330.33-----------------------0.33
...GTGCCTGTTGTAAAGA.......................................................................................................................................................................................................................................1630.330.33-----------------0.33------
.......................................................................................................................................................................................TTTTCTTCTTCCACCAG..................................................1770.140.14--0.14---------------------

Antisense strand
TCAGTGCCTGTTGTAAAGAAACCCAACAGCAGAAAAGCTGTGGTTCAGATTGATCACCCAACCTCGCTTTTTGCATACATTTCTCAGTGCAGCTGATGAGTATATTCCACCTGTCCCTGCAGCATCCATGTGAGTCCTGAGACTCCTGTTTCCTGCTCAGAAATTTGACTCATCGTAGCCTTCTTTTCTTCTTCCACCAGACCCCCGATGAAGGAGCGTGGACTTCCATCTACGCAGCAGTCACCCCAGA
.....................................................................................((.((.((.(((((((.........((((....))))........(((((...(((((....)))))..)))))........))))))))).)))).....................................................................
..................................................................................83...................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR189784SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR343334SRR343335TAX577740(Rovira)
total RNA. (breast)		SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR040018(GSM532903)
G701N. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189785SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
.........GTTGTAAAGAAACCCTATG.............................................................................................................................................................................................................................. 193.000.00--3.00---------------------
......................................................................................................................GCAGCATCCATGTGAGTTC................................................................................................................. 191.000.00-----------1.00------------
..............................................................................................................................................................................................CTTCCACCAGACCCCGG........................................... 171.000.00--------------1.00---------
.....................................................................TTTGCATACATTTCTCTT................................................................................................................................................................... 181.000.00---------1.00--------------
.................................................................................................................................................................................GGTGGAAGAAGAAAAGAAGGC.................................................... 2130.670.67------------------0.67-----