ID: uc004fou.1_intron_2_0_chrY_545562_f.5p
GENE: SHOX(3)
chrY:545512-545761+


(2)
AGO2.ip
(1)
B-CELL
(1)
BRAIN
(5)
BREAST
(7)
CELL-LINE
(6)
CERVIX
(2)
HEART
(2)
HELA
(4)
LIVER
(1)
OTHER
(11)
SKIN

Sense strand
TGCGCGAGGAGCTCAGCCAGCGCCTGGGGCTCTCCGAGGCGCGCGTGCAGGTAGGAACCCGGGGGCGGGGGCGGGGGGCCCGGAGCCATCGCCTGGTCCTCGGGAGCGCACAGCACGCGTACAGCCACCTGCGCCCGGGCCGCCGCCGTCCCCTTCCCGGAGCGCGGGGAGGTTGGGTGAGGGACGGGCTGGGGTTCCTGGACTTTTGGAGACGCCTGAGGCCTGTAGGATGGGTTCATTGCGTTTGTTT
............................................................((((((((.(((((((((.((((.((....)))))).)))).((.(((((......((.....))....)))))))...))))).)))))))).................................................................................................
...........................................................60..............................................................................................156............................................................................................
SizePerfect hitTotal NormPerfect NormSRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR189783SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
TAX577590(Rovira)
total RNA. (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
TAX577741(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029127(GSM416756)
A549. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
TAX577744(Rovira)
total RNA. (breast)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR040014(GSM532899)
G623N. (cervix)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................................................................................................GCCCGGGCCGCCGCCGGGCG..................................................................................................20101.000.0060.0041.00--------------------------------------
....................................................................................................................................GCCCGGGCCGCCGCCGGCG...................................................................................................192.000.001.001.00--------------------------------------
.....................................................................................................................................CCCGGGCCGCCGCCGGGC...................................................................................................182.000.001.001.00--------------------------------------
................................................................GCGGGGGCGGGGGGCCCGGG......................................................................................................................................................................2022.000.50---2.00------------------------------------
............................................................GGGGGCGGGGGCGGGGGGAGTG........................................................................................................................................................................221.000.001.00---------------------------------------
...................................................................GGGGCGGGGGGCCCGGACAC...................................................................................................................................................................201.000.00-----1.00----------------------------------
....................................................................................................................................GCCCGGGCCGCCGCCGGACG..................................................................................................201.000.001.00---------------------------------------
..........................................................CCGGGGGCGGGGGCGGGAGCC...........................................................................................................................................................................211.000.00-----------------------1.00----------------
....................................................................................................................................................................CGGGGAGGTTGGGTGATT....................................................................181.000.00--------------1.00-------------------------
..................................................................GGGGGCGGGGGGCCCGGCG.....................................................................................................................................................................191.000.00----------------------------1.00-----------
.........................................................CCCGGGGGCGGGGGCGGCGC.............................................................................................................................................................................201.000.00---------------------1.00------------------
............................................................GGGGGCGGGGGCGGGGGGAGAA........................................................................................................................................................................221.000.00-1.00--------------------------------------
..................................................................GGGGGCGGGGGGCCCGAC......................................................................................................................................................................181.000.00----1.00-----------------------------------
....................................................................................................................................GCCCGGGCCGCCGCCGTGCG..................................................................................................201.000.00-1.00--------------------------------------
.............................................................................................................................................................CGGAGCGCGGGGAGGTGGA..........................................................................191.000.00--------1.00-------------------------------
.....GAGGAGCTCAGCCAGCTGCT.................................................................................................................................................................................................................................201.000.00------------------------1.00---------------
...................................................................GGGGCGGGGGGCCCGGCG.....................................................................................................................................................................181.000.00--1.00-------------------------------------
............................................................GGGGGCGGGGGCGGGGGGGGGA........................................................................................................................................................................221.000.00-1.00--------------------------------------
...................................................................GGGGCGGGGGGCCCGGACA....................................................................................................................................................................191.000.00------------------------------1.00---------
..................................................................GGGGGCGGGGGGCCCGCTGG....................................................................................................................................................................201.000.00--1.00-------------------------------------
............................................................GGGGGCGGGGGCGGGGGGGT..........................................................................................................................................................................201.000.00--1.00-------------------------------------
.............................................................GGGGCGGGGGCGGGGGGCCGGT.......................................................................................................................................................................221.000.00---------------1.00------------------------
.....................................................................................................................................CCCGGGCCGCCGCCGGGGA..................................................................................................191.000.00-1.00--------------------------------------
.................................................................................................................................................................................TGAGGGACGGGCTGGGATAG.....................................................201.000.00-----1.00----------------------------------
....................................................................................................................................GCCCGGGCCGCCGCCGGGGG..................................................................................................201.000.001.00---------------------------------------
.....................................................................GGCGGGGGGCCCGGAGGG...................................................................................................................................................................181.000.00---------1.00------------------------------
............................................................GGGGGCGGGGGCGGGGGGGAAT........................................................................................................................................................................221.000.00---------------------------1.00------------
....................................................................GGGCGGGGGGCCCGGA......................................................................................................................................................................1630.670.67----------------------------------0.330.33----
................................................................GCGGGGGCGGGGGGCCCGG.......................................................................................................................................................................1920.500.50---------------------------------0.50------
....................................................................GGGCGGGGGGCCCGGACAC...................................................................................................................................................................1930.330.67-------------------------------0.33--------
...............................................................GGCGGGGGCGGGGGGCCC.........................................................................................................................................................................1850.200.20--------------------------------------0.20-
......................................................................................................................................................................................................................CCTGAGGCCTGTAGG.....................1550.200.20--------0.20-------------------------------
..................................................................................................................................GCGCCCGGGCCGCCGCC.......................................................................................................1780.120.12-0.12--------------------------------------

Antisense strand
TGCGCGAGGAGCTCAGCCAGCGCCTGGGGCTCTCCGAGGCGCGCGTGCAGGTAGGAACCCGGGGGCGGGGGCGGGGGGCCCGGAGCCATCGCCTGGTCCTCGGGAGCGCACAGCACGCGTACAGCCACCTGCGCCCGGGCCGCCGCCGTCCCCTTCCCGGAGCGCGGGGAGGTTGGGTGAGGGACGGGCTGGGGTTCCTGGACTTTTGGAGACGCCTGAGGCCTGTAGGATGGGTTCATTGCGTTTGTTT
............................................................((((((((.(((((((((.((((.((....)))))).)))).((.(((((......((.....))....)))))))...))))).)))))))).................................................................................................
...........................................................60..............................................................................................156............................................................................................
SizePerfect hitTotal NormPerfect NormSRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR189783SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
TAX577590(Rovira)
total RNA. (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR040011(GSM532896)
G529T. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
TAX577741(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029127(GSM416756)
A549. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
TAX577744(Rovira)
total RNA. (breast)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR040014(GSM532899)
G623N. (cervix)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................................................................................CGGGCCGCCGCCGTCCCCC................................................................................................ 191.000.00--1.00-------------------------------------
....................................................AGGAACCCGGGGGCGCCCG................................................................................................................................................................................... 191.000.00------------------1.00---------------------
...........................................CGTGCAGGTAGGAACA............................................................................................................................................................................................... 161.000.00------------1.00---------------------------
..........GCTCAGCCAGCGCCTCGAT............................................................................................................................................................................................................................. 191.000.00-------------------1.00--------------------
..........GCTCAGCCAGCGCCTCGC.............................................................................................................................................................................................................................. 181.000.00----------------------1.00-----------------
.........................................................CCCGGGGGCGGGGGCGGGC.............................................................................................................................................................................. 191.000.00-------------1.00--------------------------
................................................................GCGGGGGCGGGGGGCCCGTA...................................................................................................................................................................... 201.000.00-------1.00--------------------------------
....................................................................................................................................GCCCGGGCCGCCGCCGAAG................................................................................................... 191.000.00-----------------------------1.00----------
................................................................................................................................CTGCGCCCGGGCCGCCGT........................................................................................................ 181.000.00----1.00-----------------------------------
.........................................................................................................................................GGCCGCCGCCGTCCCCACC.............................................................................................. 191.000.00--------------------1.00-------------------
.................................................GGTAGGAACCCGGGGGG........................................................................................................................................................................................ 171.000.00------1.00---------------------------------
.......................................................................................................................................CGGGCCGCCGCCGTCCCCCC............................................................................................... 201.000.00-------------------------1.00--------------
.......................................................................................................................TACAGCCACCTGCGCGCTG................................................................................................................ 191.000.00----------1.00-----------------------------
.........................................................................................................................................GGCCGCCGCCGTCCCCGAGT............................................................................................. 201.000.00-----------------1.00----------------------
.............................................................GGGGCGGGGGCGGGGGGCGGC........................................................................................................................................................................ 211.000.00----------------1.00-----------------------
.............................................................................................................................................GCCGCCGTCCCCTTCCCGC.......................................................................................... 191.000.00-----------1.00----------------------------
..........................................................................................................................................GCCGCCGCCGTCCCCAG............................................................................................... 171.000.00--------------------------1.00-------------
........................................................................................................................................GGGGACGGCGGCGGCCC................................................................................................. 1720.500.50-------0.50--------------------------------
.......................................................................................................................................AGGGGACGGCGGCGGCCCG................................................................................................ 1920.500.50--------------------------------0.50-------
................................................................................................................GTGGCTGTACGCGTGC.......................................................................................................................... 1620.500.50-------------------------------0.50--------
...........................................GTTCCTACCTGCACG................................................................................................................................................................................................ 1520.500.50------0.50---------------------------------
.........CCAGGCGCTGGCTGAGCT............................................................................................................................................................................................................................... 1830.330.33-------------------------------------0.33--
................................................................................................................................................CCGGGAAGGGGACGGC.......................................................................................... 1630.330.33------------------------------------0.33---
................................................................................................................................................CGGGAAGGGGACGGC........................................................................................... 1550.200.20---------------------------------------0.20