ID: uc004fls.1_intron_4_0_chrX_153736679_r
GENE: (4)
chrX:153736629-153736854-


(2)
AGO2.ip
(6)
B-CELL
(8)
BRAIN
(4)
BREAST
(14)
CELL-LINE
(4)
CERVIX
(3)
HEART
(3)
HELA
(7)
LIVER
(1)
OTHER
(1)
RRP40.ip
(13)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
AGCGGGGCCGCCAACGTCATTGGGCCCAAGATCTGCCTCGAGGACAAGATGTGAGCTCCCTGGGGTGACTGGGGATCAGGGAGGGAGTGGGGGATCCAGGGCCGGGTCTGCAAGGGAGAGTGGAGCAGACGTGCCCATGTGGGATCTCCCCGTCCCCCCCACCCCCCCCCAACTAGGCTGATGAGCAGCGTCAAGGACAACGTGGGCCGCGGGCTGAACATCGCCC
.......................................................(((((((((....))......)))))))(((........))).(((.((.((((((.............)))))).)))))..........................................................................................
..................................................51....................................................................................137.......................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR189783SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
GSM532880(GSM532880)
G659T. (cervix)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR038854(GSM458537)
MM653. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR553576(SRX182782)
source: Testis. (testes)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532879(GSM532879)
G659N. (cervix)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
TAX577743(Rovira)
total RNA. (breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................................AAGGGAGAGTGGAGCAGACGTG.............................................................................................22114.0014.005.00------------2.00----2.00-------------1.00-1.00--------1.001.00-1.00--------------------
...............................TCTGCCTCGAGGACAAGATGCT.............................................................................................................................................................................226.000.00--4.00----1.00------------1.00----------------------------------------------
..............................................................................................................CAAGGGAGAGTGGAGCAGACGTGT............................................................................................2416.002.00----5.00-------------------------------------------------1.00------------
...............................................................................................................AAGGGAGAGTGGAGCAGACGTGT............................................................................................2315.0014.003.00-------------2.00----------------------------------------------------
....................................................................................................................................................................................ATGAGCAGCGTCAAGGACAACGTGGGCCGCGGG.............3314.004.00---4.00---------------------------------------------------------------
...........................................................CTGGGGTGACTGGGGATCAG...................................................................................................................................................2013.003.00--------3.00----------------------------------------------------------
.................................................................................................................................................CTCCCCGTCCCCCCCCCTC..............................................................193.000.00-1.00---------------------------1.00-----1.00-------------------------------
...............................................................................................................AAGGGAGAGTGGAGCAGACGTGA............................................................................................2313.0014.00------------2.00---------------------------1.00--------------------------
...............................TCTGCCTCGAGGACAAGATGC..............................................................................................................................................................................213.000.00--1.00----1.00-------------------------1.00---------------------------------
.................................................................................................................................................CTCCCCGTCCCCCCCCCT...............................................................183.000.00---------2.00-------------------------------------1.00-------------------
.................................................................................................................................................CTCCCCGTCCCCCCCCTC...............................................................182.000.00-1.00---------------1.00-------------------------------------------------
..............................................................................................................CAAGGGAGAGTGGAGCAGAC................................................................................................2012.002.00---------------2.00---------------------------------------------------
...................................................................................................................................................................................GATGAGCAGCGTCAAGGACAACGTGGGCCG.................3012.002.00-2.00-----------------------------------------------------------------
..........CCAACGTCATTGGGCCCAAGA...................................................................................................................................................................................................2112.002.00-----------1.00-------------------------------------------------1.00-----
.....................................................................................................................................................................................TGAGCAGCGTCAAGGACAACGTGGGCCG.................2812.002.00-----2.00-------------------------------------------------------------
................................................................................................................AGGGAGAGTGGAGCAGACGTG.............................................................................................2112.002.001.00-----------------------------1.00------------------------------------
..............................................................................................................CAAGGGAGAGTGGAGCAGACGT..............................................................................................2212.002.002.00------------------------------------------------------------------
................................................................................................................AGGGAGAGTGGAGCAGACGT..............................................................................................2012.002.002.00------------------------------------------------------------------
.................................................................................................................GGGAGAGTGGAGCAGCCG...............................................................................................182.000.00-------------------2.00-----------------------------------------------
...............................................................................................................AAGGGAGAGTGGAGCAGACG...............................................................................................2012.002.00---------------------------------------1.00--------------------1.00------
..............................................................................................................CAAGGGAGAGTGGAGCAGACGTG.............................................................................................2312.002.00-----------------------------------------1.00-------------1.00-----------
...................TTGGGCCCAAGATCTGCCTCGAGGACAAGA.................................................................................................................................................................................3011.001.00----------------------------------------------------------1.00--------
...........................AAGATCTGCCTCGAGGACAAGATTCT.............................................................................................................................................................................261.000.00-1.00-----------------------------------------------------------------
...........................AAGATCTGCCTCGAGGACAAGATGC..............................................................................................................................................................................251.000.00---1.00---------------------------------------------------------------
.......................................................................................................................................................................................AGCAGCGTCAAGGACAA..........................1711.001.00-----------------------------------------------------1.00-------------
...............................TCTGCCTCGAGGACAAGA.................................................................................................................................................................................1811.001.00----------------1.00--------------------------------------------------
...................................................................................................................................................CCCCGTCCCCCCCACCCCTC...........................................................201.000.00----------------------------------------------------1.00--------------
.......................................................................................................................................................................................AGCAGCGTCAAGGACAACGT.......................2011.001.00--------------------1.00----------------------------------------------
.................................................................................................................................................CTCCCCGTCCCCCCCCCCG..............................................................191.000.00-------------------------------1.00-----------------------------------
..................................................................................................................................................TCCCCGTCCCCCCCACCA..............................................................181.000.00--------------------------------------------------1.00----------------
..............................................................................................................CAAGGGAGAGTGGAGCAGAAGTT.............................................................................................231.000.00------------------------1.00------------------------------------------
...................................................................................................................................................................................GATGAGCAGCGTCAAGGACAACGT.......................2411.001.00-------------------------------------1.00-----------------------------
...................................................................................................................................................................................GATGAGCAGCGTCAAGGACA...........................2011.001.00----------1.00--------------------------------------------------------
...................................................................................................................................................................................................GACAACGTGGGCCGCGGG.............1811.001.00-----1.00-------------------------------------------------------------
............................AGATCTGCCTCGAGGACAAGATGC..............................................................................................................................................................................241.000.00---------------------1.00---------------------------------------------
...........................AAGATCTGCCTCGAGGACAAGATGCTG............................................................................................................................................................................271.000.00------------------------------------1.00------------------------------
........................................................................................................................................................TCCCCCCCACCCCCCCCCACAC....................................................221.000.00----------------------------1.00--------------------------------------
...................................................................................................................................................................................GATGAGCAGCGTCAAGGACAACG........................2311.001.00-----1.00-------------------------------------------------------------
..........................................................................................................................................................CCCCCCACCCCCCCCCTTTA....................................................201.000.00---------------------------------------------------------1.00---------
............................................................................................................................................................................................CGTCAAGGACAACGTGGGCCGCG...............2311.001.00------1.00------------------------------------------------------------
............................................CAAGATGTGAGCTCCCTGGGGTGACTG...........................................................................................................................................................2711.001.00-------------------------1.00-----------------------------------------
....................................................................................................................................................................................................ACAACGTGGGCCGCGGG.............1711.001.00-1.00-----------------------------------------------------------------
.............................................................................................................................................................................................GTCAAGGACAACGTGCGCT..................191.000.00--------------------------------------------------------------1.00----
...............................................................................................................................................................................GGCTGATGAGCAGCGTCAAGGACAACGTGT.....................301.000.00-1.00-----------------------------------------------------------------
.................................................................................................................................................................................................AGGACAACGTGGGCCGTGG..............191.000.00----------1.00--------------------------------------------------------
............................................................................................................................................................................................CGTCAAGGACAACGTGGGCC..................2011.001.00-----------------------1.00-------------------------------------------
.............ACGTCATTGGGCCCAAG....................................................................................................................................................................................................1711.001.00-----------1.00-------------------------------------------------------
.........................................................................................................GTCTGCAAGGGAGAGTGGAGC....................................................................................................2111.001.00--------------------------1.00----------------------------------------
............................................................................................................TGCAAGGGAGAGTGGAGCAGACGTGC............................................................................................2611.001.00----------------1.00--------------------------------------------------
........................................................................................................................................................................................................CGTGGGCCGCGGGCTGAACATCGC..2411.001.00-1.00-----------------------------------------------------------------
............................................CAAGATGTGAGCTCCCTGGGGTGACTGG..........................................................................................................................................................2811.001.00----------------------1.00--------------------------------------------
...............................TCTGCCTCGAGGACAAGATGCTGA...........................................................................................................................................................................241.000.00--1.00----------------------------------------------------------------
................................................................................................................AGGGAGAGTGGAGCAGGC................................................................................................181.000.00---------------------------1.00---------------------------------------
.................................................................................................................................................CTCCCCGTCCCCCCCCT................................................................171.000.00---------1.00---------------------------------------------------------
............AACGTCATTGGGCCCAAGATCTGCCTCG..........................................................................................................................................................................................2811.001.00--------------------------------------------------------1.00----------
................................................................................................................AGGGAGAGTGGAGCAGACGTGC............................................................................................2211.001.00------1.00------------------------------------------------------------
...............................................................................................................AAGGGAGAGTGGAGCAGACGTAG............................................................................................231.000.00------------------------------------------1.00------------------------
.......................................................................................................................................................................................................ACGTGGGCCGCGGGCTGAACATCGC..2511.001.00-------------------------------------------------1.00-----------------
..............................................................................................................CAAGGGAGAGTGGAGCAGACGTGA............................................................................................2411.002.001.00------------------------------------------------------------------
................................CTGCCTCGAGGACAAGATGC..............................................................................................................................................................................201.000.00-------1.00-----------------------------------------------------------
...............................................................................................................AAGGGAGAGTGGAGCAGAC................................................................................................1920.500.50-----------------------------------------------------------------0.50-
...................................CCTCGAGGACAAGAT................................................................................................................................................................................1520.500.50----------------------------------------------------------------0.50--
............................................CAAGATGTGAGCTCC.......................................................................................................................................................................1550.200.20------------------------------------------------------------------0.20

Antisense strand
AGCGGGGCCGCCAACGTCATTGGGCCCAAGATCTGCCTCGAGGACAAGATGTGAGCTCCCTGGGGTGACTGGGGATCAGGGAGGGAGTGGGGGATCCAGGGCCGGGTCTGCAAGGGAGAGTGGAGCAGACGTGCCCATGTGGGATCTCCCCGTCCCCCCCACCCCCCCCCAACTAGGCTGATGAGCAGCGTCAAGGACAACGTGGGCCGCGGGCTGAACATCGCCC
.......................................................(((((((((....))......)))))))(((........))).(((.((.((((((.............)))))).)))))..........................................................................................
..................................................51....................................................................................137.......................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR189783SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
GSM532880(GSM532880)
G659T. (cervix)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR038854(GSM458537)
MM653. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR553576(SRX182782)
source: Testis. (testes)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532879(GSM532879)
G659N. (cervix)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
TAX577743(Rovira)
total RNA. (breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................................................................................................................CCGTCCCCCCCACCCCAAA.......................................................... 191.000.00----------1.00--------------------------------------------------------
............................................................................................................................................................CCCCACCCCCCCCCAACGGC.................................................. 201.000.00------------------------------------------------1.00------------------
..................................................GTGAGCTCCCTGGGGGTT.............................................................................................................................................................. 181.000.00---------------------------------------------1.00---------------------
..........................................................................................................................................................CCCCCCACCCCCCCCCAATA.................................................... 201.000.00---------------------------------------------------1.00---------------
.....................................................................................................................................................................ACGCTGCTCATCAGCCTAGTTGGGGG................................... 2611.001.00-----------------------------------------------------------1.00-------
.GCGGGGCCGCCAACGCT................................................................................................................................................................................................................ 171.000.00--------------------------------------1.00----------------------------
..........................................................................................................................................................CCCCCCACCCCCCCCCATAA.................................................... 201.000.00------1.00------------------------------------------------------------
.................................................................................................................GGGAGAGTGGAGCAGGATA.............................................................................................. 191.000.00-----------------1.00-------------------------------------------------
....................................CATCTTGTCCTCGAG............................................................................................................................................................................... 1520.500.50---------------------------------------------------------------0.50---
...................................................................................................................................................GGGTGGGGGGGACGGGG.............................................................. 1760.170.17------0.17------------------------------------------------------------