ID: uc004fln.1_intron_0_0_chrX_153706398_r
GENE: LAGE3(2)
chrX:153706348-153706671-


(2)
AGO1.ip
(4)
AGO2.ip
(1)
AGO3.ip
(18)
B-CELL
(10)
BRAIN
(16)
BREAST
(31)
CELL-LINE
(7)
CERVIX
(4)
HEART
(6)
HELA
(12)
LIVER
(1)
OTHER
(18)
SKIN
(2)
UTERUS
(1)
XRN.ip

Sense strand
CAAAGGGTGGTTGGGAAGGATCTCACAGTGAGTGGCAGGATCCTGGTCGTGTAAGTTCTGAAAGGGACGGGGTTGGGGGAGGCGGCCCATGGAGACATGGGGGACATCCAAGGATGAGCCCTAAGGAGCGCCAGGTGCGCTGGGCCGGTCTCTGCCTGAGGGGCTGTGTAATGGCAGGGCTCCCAAGGGTTTGCTATATTGGGTGCCTGAGGGGCAGAGCGAGGGACCAGGAGTTGCCACCTCCAATTTGATTTTCTTTTCCCCTCACTTTTAGCCGCTGGAAAGCTGAAGACTGTCGCCTGCTCCGAATTTCCGTCATCAACT
.........................................................................................................(((....)))..((((.....(((((.....))))))))).(((((((.(((..((((((.(((....))).))))))..))).((((((...((((....))))..))))))...)))))))................................................................................................
.........................................................................................................106..........................................................................................................................231...........................................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189786SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189782SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR189784GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR189787TAX577590(Rovira)
total RNA. (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR191543(GSM715653)
124genomic small RNA (size selected RNA from . (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM359175(GSM359175)
hela_5_pct. (hela)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR040032(GSM532917)
G603N. (cervix)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577579(Rovira)
total RNA. (breast)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR343336SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343337SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040011(GSM532896)
G529T. (cervix)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR038861(GSM458544)
MM466. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
GSM532889(GSM532889)
G576N. (cervix)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR029124(GSM416753)
HeLa. (hela)
SRR040030(GSM532915)
G013N. (cervix)
TAX577580(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR038855(GSM458538)
D10. (cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR038858(GSM458541)
MEL202. (cell line)
SRR040007(GSM532892)
G601T. (cervix)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577741(Rovira)
total RNA. (breast)
SRR040025(GSM532910)
G613T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR038860(GSM458543)
MM426. (cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR038862(GSM458545)
MM472. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGACTT.................................................................................................20715.571.00--0.86---1.000.290.290.140.140.14-----0.71-0.29---0.430.291.000.140.140.140.14-----------0.86---------------0.140.290.140.140.57-0.29---0.430.290.290.430.43----0.290.14-0.14-0.290.290.290.29-0.29---0.14-0.140.140.140.140.14--0.14----0.14-0.14-0.14--0.14---0.140.140.140.140.14-0.140.140.14-0.14-0.14-0.14-
..............................................................................................................AGGATGAGCCCTAAGGAG....................................................................................................................................................................................................1818.008.00-8.00---------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................TGAAGACTGTCGCCTGCTCCGA................2217.007.00------------2.00-------------------1.00---------1.00-1.00----1.00-----1.00---------------------------------------------------------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGGCTTT................................................................................................215.000.00--3.00------------------------------------------------1.001.00------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................AAAGCTGAAGACTGTCGCCTGCTCCG.................2614.004.00----------1.00--2.00----------------------1.00----------------------------------------------------------------------------------------------
......GTGGTTGGGAAGGATCTCACAGTGAGTGGCAG..............................................................................................................................................................................................................................................................................................3213.003.003.00----------------------------------------------------------------------------------------------------------------------------------
..........................AGTGAGTGGCAGGATCCTGGTCGTCC................................................................................................................................................................................................................................................................................262.000.002.00----------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................GCAGGGCTCCCAAGGGGA.....................................................................................................................................182.000.00---------------2.00-------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................GACTGTCGCCTGCTCCG.................1712.002.00---------2.00-------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................TGAAGACTGTCGCCTGCTCC..................2012.002.002.00----------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................CTGAAGACTGTCGCCTGCTCCGAA...............2412.002.00-----------2.00-----------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAAACT..................................................................................................192.000.00--1.00--------------------1.00-----------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGAAA..................................................................................................1971.861.00---------------------------------------------------------0.43----0.290.29----0.14---------0.14-0.29-----------------0.14-------------------------0.14------
....................................................................................................................................................................................................................................................................................GCTGGAAAGCTGAAGACT..............................1821.501.50-----------------0.500.50-----------------------------------------0.50----------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................AAGCTGAAGACTGTCGCCTG......................2011.001.00----1.00------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGGGTTT................................................................................................211.000.00--1.00--------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................TTTAGCCGCTGGAAAGCTGAAGACTGT............................2711.001.00--------------1.00--------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................TGGAAAGCTGAAGACTGT............................1821.001.00----------------------0.50------------------------------------------0.50-----------------------------------------------------------------
..........TTGGGAAGGATCTCACAGTGAGTG..................................................................................................................................................................................................................................................................................................2411.001.00----------------------------------1.00------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................GGAAAGCTGAAGACTGTCGCCTGCTCCGAATTT............3311.001.00---1.00-------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................AAAGCTGAAGACTGTCGCCTGCTC...................2411.001.00------1.00----------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................TGGAAAGCTGAAGACTGTCG..........................2011.001.00----------------------------------------1.00------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................CGCTGGAAAGCTGAAGACTGTCG..........................2311.001.00---------------------1.00-------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................GGAAAGCTGAAGACTGTCGCCTG......................2311.001.00--------------------1.00--------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................AAGACTGTCGCCTGCTCCG.................1911.001.00-----------------------------------------------1.00-----------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................AAGACTGTCGCCTGCTCCGAATTTCCGTCATCAACT3611.001.001.00----------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................GCTGGAAAGCTGAAGACTG.............................1921.001.00-----0.50----------------------------------------------------------0.50------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................GCTGGAAAGCTGAAGACTGTCGCCTGCTCC..................3011.001.00-----------------------------------------------------1.00-----------------------------------------------------------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGACTTC..................................................................................................191.000.00------------------------1.00----------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGACTTT..................................................................................................191.000.00--------1.00--------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................GGAAAGCTGAAGACTGTC...........................1811.001.00-----1.00-----------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................CTGAAGACTGTCGCCTG......................1711.001.00----------------------------------------------1.00------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................TGGAAAGCTGAAGACTGTC...........................1911.001.00-----1.00-----------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................GCTGGAAAGCTGAAGACTGTCGCAT.......................251.000.00----------1.00------------------------------------------------------------------------------------------------------------------------
...............AAGGATCTCACAGTGTAG...................................................................................................................................................................................................................................................................................................181.000.00-------------------1.00---------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................ATTTTCTTTTCCCCTCCAG.......................................................191.000.00------------------------------------------------------1.00----------------------------------------------------------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGGGACTTT..............................................................................................231.000.00---------------------------------1.00-------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................AAGCTGAAGACTGTCGCCTGC.....................2111.001.00---1.00-------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................CTGGAAAGCTGAAGACTGT............................1921.001.00-----0.50------------------------------------------------------------0.50----------------------------------------------------------------
.................................................................................................................................................................................................................AGGGGCAGAGCGAGGACAG................................................................................................191.000.00--------------------------1.00--------------------------------------------------------------------------------------------------------
........................................................TCTGAAAGGGACGGGGTTGG........................................................................................................................................................................................................................................................2011.001.00----------------------------1.00------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................AGACTGTCGCCTGCTCCGA................1911.001.00----1.00------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................AGCTGAAGACTGTCGCCT.......................1811.001.00-----------------------------------1.00-----------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................AAGACTGTCGCCTGCTCCGAATTTCCGCC.......291.000.00-------------------------------------------1.00---------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................TGAAGACTGTCGCCTGCTCTGAA...............231.000.00---1.00-------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................GCTGGGCCGGTCTCTGCCTGAG....................................................................................................................................................................2211.001.00---------------------------------------1.00-------------------------------------------------------------------------------------------
...............AAGGATCTCACAGTGTATT..................................................................................................................................................................................................................................................................................................191.000.00--------1.00--------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................ATATTGGGTGCCTGAGGG...............................................................................................................1811.001.00-------1.00---------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................GAAGACTGTCGCCTGCTCCGAATTTC...........2611.001.00-------------------------------------1.00---------------------------------------------------------------------------------------------
...............................................................GGGACGGGGTTGGGGGTA...................................................................................................................................................................................................................................................181.000.00----------------1.00------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................CTGAAGACTGTCGCCTGCTCCGA................2311.001.00---------------------------1.00-------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................AGCTGAAGACTGTCGCCTGCTCC..................2311.001.001.00----------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................TGAAGACTGTCGCCTGCTCCG.................2111.001.00----------------1.00------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................GGAAAGCTGAAGACTGTCGCCTGCTG...................261.000.00----1.00------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................GCTGAAGACTGTCGCCTGTT....................201.000.00--------------1.00--------------------------------------------------------------------------------------------------------------------
......GTGGTTGGGAAGGATGACG...........................................................................................................................................................................................................................................................................................................191.000.00-------1.00---------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................TGAAGACTGTCGCCTG......................1611.001.00--------------------------------------1.00--------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGACTCT..................................................................................................191.000.00--1.00--------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................TGGAAAGCTGAAGACTGTCGCCT.......................2311.001.00------1.00----------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAG.....................................................................................................1671.001.00-------------------0.29---------------------0.14-------------------------------------0.14-----------------0.14--------------0.14-0.14----------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGAGAC.................................................................................................2070.711.00--------------------------------------------------------------0.14--------------------------0.14-0.14----------0.14----------0.14-----------------
.AAAGGGTGGTTGGGAAGGA................................................................................................................................................................................................................................................................................................................1930.670.67------------------0.67----------------------------------------------------------------------------------------------------------------
..................................................................................CGGCCCATGGAGACA...................................................................................................................................................................................................................................1530.670.67------------------------------------------------------------------------0.33-0.33--------------------------------------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGAT...................................................................................................1870.571.00-----------------------------0.14-----------------------------------------------0.14----------------------0.14---------------------------0.14--
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGACAA.................................................................................................2070.571.00-------------------------0.14--------------------------------0.29--------------------------------------------------0.14---------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGAAAA.................................................................................................2070.571.00---------------------------------------------------------0.14----0.14----------------------0.29---------------------------------------------
.AAAGGGTGGTTGGGAAGGAT...............................................................................................................................................................................................................................................................................................................2020.500.50------------------0.50----------------------------------------------------------------------------------------------------------------
.AAAGGGTGGTTGGGAAGGATC..............................................................................................................................................................................................................................................................................................................2120.500.50-----------------------------------------------------------0.50-----------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................GCTGGAAAGCTGAAGACTGT............................2020.500.50--------------------0.50--------------------------------------------------------------------------------------------------------------
...AGGGTGGTTGGGAAGGATC..............................................................................................................................................................................................................................................................................................................1920.500.50-----------------------------0.50-----------------------------------------------------------------------------------------------------
...AGGGTGGTTGGGAAGGAT...............................................................................................................................................................................................................................................................................................................1820.500.50---------------------0.50-------------------------------------------------------------------------------------------------------------
....................................................................GGGGTTGGGGGAGGCGGC..............................................................................................................................................................................................................................................1830.330.33-------------------------------------------------------------------------0.33---------------------------------------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGAGTT.................................................................................................2070.291.00-------0.14---------------------0.14-----------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGACTA.................................................................................................2070.291.00----------------------------------------------------------0.14----------------0.14-------------------------------------------------------
.....................................................................................................................................................................................................................................................................................CTGGAAAGCTGAAGAC...............................1660.170.17---------------------------------------------------------------------------0.17-------------------------------------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGAG...................................................................................................1870.141.00----------------------------------------------------------0.14------------------------------------------------------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGACG..................................................................................................1970.141.00---------------------------------------------------------------------------------------------------------0.14-------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGCC...................................................................................................1870.141.00------------------------------------------------------------------------------0.14----------------------------------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGAGAT.................................................................................................2070.141.00----------------------------------------------------------------------------------------------------------------------------------0.14
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGAAAT.................................................................................................2070.141.00-----------------------------------------------------------------------------------------------------------0.14-----------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGTAA..................................................................................................1970.141.00------------------------------------------------------------------------------------------------------------------------0.14----------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGCGT..................................................................................................1970.141.00-----------------------------------------------------------------------------------------------------0.14-----------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGTT...................................................................................................1870.141.00------------------------------------------------------------------------------------------------------------------------------0.14----
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGAGCC.................................................................................................2070.141.00--------------------------------------------------------------------------------------------------------------0.14--------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGAGAA.................................................................................................2070.141.00-------------------------------------------------------------------------------------------------------0.14---------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGCT...................................................................................................1870.141.00---------------------------------------------------------0.14-------------------------------------------------------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGAATA.................................................................................................2070.141.00---------------------------------------------------------------------------------------0.14-------------------------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGACC..................................................................................................1970.141.00--0.14--------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGC....................................................................................................1770.141.00----------------------------------------------------------------------------------------0.14------------------------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGAGC..................................................................................................1970.141.00-----------------------------0.14-----------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGCA...................................................................................................1870.141.00---------------------------------------------------------0.14-------------------------------------------------------------------------
...............................................................................................................................................................................................................TGAGGGGCAGAGCGAGTTT..................................................................................................1970.141.00---------------------------------------------------------------------0.14-------------------------------------------------------------

Antisense strand
CAAAGGGTGGTTGGGAAGGATCTCACAGTGAGTGGCAGGATCCTGGTCGTGTAAGTTCTGAAAGGGACGGGGTTGGGGGAGGCGGCCCATGGAGACATGGGGGACATCCAAGGATGAGCCCTAAGGAGCGCCAGGTGCGCTGGGCCGGTCTCTGCCTGAGGGGCTGTGTAATGGCAGGGCTCCCAAGGGTTTGCTATATTGGGTGCCTGAGGGGCAGAGCGAGGGACCAGGAGTTGCCACCTCCAATTTGATTTTCTTTTCCCCTCACTTTTAGCCGCTGGAAAGCTGAAGACTGTCGCCTGCTCCGAATTTCCGTCATCAACT
.........................................................................................................(((....)))..((((.....(((((.....))))))))).(((((((.(((..((((((.(((....))).))))))..))).((((((...((((....))))..))))))...)))))))................................................................................................
.........................................................................................................106..........................................................................................................................231...........................................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189786SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189782SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR189784GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR189787TAX577590(Rovira)
total RNA. (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR191543(GSM715653)
124genomic small RNA (size selected RNA from . (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM359175(GSM359175)
hela_5_pct. (hela)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR040032(GSM532917)
G603N. (cervix)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577579(Rovira)
total RNA. (breast)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR343336SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343337SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040011(GSM532896)
G529T. (cervix)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR038861(GSM458544)
MM466. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
GSM532889(GSM532889)
G576N. (cervix)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR029124(GSM416753)
HeLa. (hela)
SRR040030(GSM532915)
G013N. (cervix)
TAX577580(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR038855(GSM458538)
D10. (cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR038858(GSM458541)
MEL202. (cell line)
SRR040007(GSM532892)
G601T. (cervix)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577741(Rovira)
total RNA. (breast)
SRR040025(GSM532910)
G613T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR038860(GSM458543)
MM426. (cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR038862(GSM458545)
MM472. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
.....................................................................................................................................GGTGCGCTGGGCCGGAAA............................................................................................................................................................................. 182.000.00-------------------------------1.00-------------1.00-------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................GCCACCTCCAATTTGATCGGC.................................................................... 211.000.00--------------------------------------------------------1.00--------------------------------------------------------------------------
....................CAGGATCCTGCCACTCACTGTGAGA....................................................................................................................................................................................................................................................................................... 2511.001.00------------------------------1.00----------------------------------------------------------------------------------------------------
...............................................................................................................................GCGCCAGGTGCGCTGCA.................................................................................................................................................................................... 171.000.00----------------------1.00------------------------------------------------------------------------------------------------------------
.................................................................................................................................................CGGTCTCTGCCTGAGAG.................................................................................................................................................................. 171.000.00------------------------------------------------1.00----------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................TTTTCTTTTCCCCTCAAAAA..................................................... 201.000.00--------------------------------------------------1.00--------------------------------------------------------------------------------