ID: uc004fjr.12
GENE: IRAK1(1)
chrX:153285000-153285177-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(3)
AGO2.ip 		(1)
AGO3.ip 		(7)
B-CELL 		(2)
BRAIN 		(18)
BREAST 		(36)
CELL-LINE 		(10)
CERVIX 		(3)
HEART 		(3)
HELA 		(10)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(30)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CTTCTACAAAGTGATGGACGCCCTGGAGCCCGCCGACTGGTGCCAGTTCGGTGGGTGGCGGCGGGCTGCCGGGGGGCGGGAGGCGCGCGGGCTCCTGGCGCCGACGCCTGACGCCCCCCGCCCCGCAGCCGCCCTGATCGTGCGCGACCAGACCGAGCTGCGGCTGTGCGAGCGCTCC
............................................................(((((..((.((((((((..(((((..(((((.....)).))).)))))..)))))))))))))))....................................................
............................................................61.................................................................128................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		TAX577579(Rovira)
total RNA. (breast)		SRR038857(GSM458540)
D20. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR040042(GSM532927)
G428N. (cervix)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM532889(GSM532889)
G576N. (cervix)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR040030(GSM532915)
G013N. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR191463(GSM715573)
111genomic small RNA (size selected RNA from . (breast)		SRR191441(GSM715551)
106genomic small RNA (size selected RNA from . (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040011(GSM532896)
G529T. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040009(GSM532894)
G727T. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR038863(GSM458546)
MM603. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR040043(GSM532928)
G428T. (cervix)		TAX577738(Rovira)
total RNA. (breast)		SRR444066(SRX128914)
Sample 23cDNABarcode: AF-PP-339: ACG CTC TTC . (cell line)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
...........................................................................................................CTGACGCCCCCCGCCCCGCAGT.................................................22118.0010.00--1.00-----------------1.00-------1.00-----1.00---1.00------1.00-----1.00------------------------------1.00--1.00---1.00-1.00-1.00--1.00-1.00-1.00--------1.00----1.00---1.00-------
...........................................................................................................CTGACGCCCCCCGCCCCGCAGA.................................................22117.0010.00--2.00-1.00---1.00----------2.00-2.001.001.00---1.001.001.00------------1.00------------------1.00-----------------1.00-----------------1.00----------------------------
...........................................................................................................CTGACGCCCCCCGCCCCGCAG..................................................21110.0010.00-------------1.00---------1.00--1.00---------1.001.00-----1.00--------------------1.00------------1.00---------------------------------1.001.00-------------
.................................................................CTGCCGGGGGGCGGGCGC...............................................................................................187.000.00-------2.00---1.00-------------1.00--------------1.00-------------------------------------------------------------1.00-1.00---------------------
.................................................................CTGCCGGGGGGCGGGCG................................................................................................176.000.00-----------2.00-------------1.00-------1.00-1.00------------------------------------1.00-----------------------------------------------------
...................................................................GCCGGGGGGCGGGAGGCGCGCGA........................................................................................2315.001.005.00-----------------------------------------------------------------------------------------------------------------------------
...................................................................GCCGGGGGGCGGGAGGCGCGC..........................................................................................2114.004.00-4.00----------------------------------------------------------------------------------------------------------------------------
.....................................................................CGGGGGGCGGGAGGCGCGCGGGC......................................................................................2314.004.00------------------------------2.00-----------------------1.00--------------------------------------------1.00--------------------------
..........................................................CGGCGGGCTGCCGGGGGGCGGGAG................................................................................................2414.004.00------4.00-----------------------------------------------------------------------------------------------------------------------
....TACAAAGTGATGGACGCCCTGGAGC.....................................................................................................................................................2514.004.00---4.00--------------------------------------------------------------------------------------------------------------------------
...........................................................................................................CTGACGCCCCCCGCCCCGCAGTATC..............................................2513.0010.00--------------3.00---------------------------------------------------------------------------------------------------------------
...........................................................................................................CTGACGCCCCCCGCCCCGCA...................................................2013.003.00----1.00-----------------------------------------------------------------------------------1.00-----------------1.00-------------------
...........................................................................................................CTGACGCCCCCCGCCCCGCAGTT................................................2312.0010.00----------------------------------------------------------1.00---------------------------------1.00---------------------------------
....................................................................CCGGGGGGCGGGAGGCGGCG..........................................................................................202.000.00---------1.00------------------------------------------------------------------------------------1.00-------------------------------
...................................................................GCCGGGGGGCGGGAGGCGCGCGG........................................................................................2312.002.002.00-----------------------------------------------------------------------------------------------------------------------------
........................................................................GGGGCGGGAGGCGCGCGGGCA.....................................................................................2112.001.00------------------------------------------------------------------------------1.00------------------------1.00----------------------
...........................................................................................................CTGACGCCCCCCGCCCCGCAGAT................................................2312.0010.00--1.00---------------------------------------------------------------------------------------1.00-----------------------------------
............................................................................................................TGACGCCCCCCGCCCCGCAGT.................................................2112.001.00-----------------------------------------------------------------1.00-------------------------------------------------1.00----------
........AAGTGATGGACGCCCTGG........................................................................................................................................................1812.002.00---------2.00--------------------------------------------------------------------------------------------------------------------
...........................................................................................................CTGACGCCCCCCGCCCCGCAGAAT...............................................2412.0010.00--1.00------------------------------------------------------1.00--------------------------------------------------------------------
...........................................................................................................CTGACGCCCCCCGCCCCGCAGAA................................................2312.0010.00---------------1.00-----------------------------------------------------1.00--------------------------------------------------------
........AAGTGATGGACGCCCTGGA.......................................................................................................................................................1912.002.00------------------------2.00-----------------------------------------------------------------------------------------------------
........................................................................GGGGCGGGAGGCGCGCGGGC......................................................................................2011.001.00----------------------1.00-------------------------------------------------------------------------------------------------------
..............................................TTCGGTGGGTGGCGGCGCA.................................................................................................................191.000.00----------------------------------------------1.00-------------------------------------------------------------------------------
............GATGGACGCCCTGGAGCCCGCCGAC.............................................................................................................................................2511.001.00-------------------------------------------------------------------1.00----------------------------------------------------------
.......AAAGTGATGGACGCCCTGGAG......................................................................................................................................................2111.001.00----------------1.00-------------------------------------------------------------------------------------------------------------
..............................................................................................................ACGCCCCCCGCCCCGGGCG.................................................191.000.00-----------------1.00------------------------------------------------------------------------------------------------------------
........AAGTGATGGACGCCCTGGAGCCC...................................................................................................................................................2311.001.00--------------------------------------------------------------------------------1.00---------------------------------------------
.....................................................................CGGGGGGCGGGAGGCGCGCGGGCT.....................................................................................2411.001.00---------------------------------------------------------------------------------------------------------------------------1.00--
.......AAAGTGATGGACGCCCTTGAG......................................................................................................................................................211.000.00----------------1.00-------------------------------------------------------------------------------------------------------------
................GACGCCCTGGAGCCCGCCGACTGGCG........................................................................................................................................261.000.00--------------------------------------------------------------------------------------1.00---------------------------------------
............................................................................................................TGACGCCCCCCGCCCCGCAGAA................................................2211.001.00--1.00---------------------------------------------------------------------------------------------------------------------------
...................................................TGGGTGGCGGCGGGCTGTAA...........................................................................................................201.000.00--------1.00---------------------------------------------------------------------------------------------------------------------
...................................................................................................................................CCCTGATCGTGCGCGAC..............................1711.001.00------------------------------------------------------------------------------------------------------------1.00-----------------
.....................................................................CGGGGGGCGGGAGGCGCGCGG........................................................................................2111.001.00-----1.00------------------------------------------------------------------------------------------------------------------------
......CAAAGTGATGGACGCCCTGGAGCC....................................................................................................................................................2411.001.00-----------------------------------------1.00------------------------------------------------------------------------------------
..TCTACAAAGTGATGGACGCCC...........................................................................................................................................................2111.001.00----------1.00-------------------------------------------------------------------------------------------------------------------
...........................................................................................................CTGACGCCCCCCGCCCCGCAGTA................................................2311.0010.00--1.00---------------------------------------------------------------------------------------------------------------------------
...........................................................................GCGGGAGGCGCGCGGTCGG....................................................................................191.000.00-------------1.00----------------------------------------------------------------------------------------------------------------
...........................................................................................................CTGACGCCCCCCGCCCCGCATT.................................................2211.003.00-------------1.00----------------------------------------------------------------------------------------------------------------
............................................................................................................TGACGCCCCCCGCCCCGC....................................................1811.001.00-1.00----------------------------------------------------------------------------------------------------------------------------
..................................................................TGCCGGGGGGCGGGAGGCGCGC..........................................................................................2211.001.00--------------------------------------------1.00---------------------------------------------------------------------------------
..........................................................................................................CCTGACGCCCCCCGCCCCG.....................................................1911.001.00---------------------------------------1.00--------------------------------------------------------------------------------------
..............................................................................................................................................CGCGACCAGACCGAGCTG..................1811.001.00--------1.00---------------------------------------------------------------------------------------------------------------------
...............................................................................................TGGCGCCGACGCCTGACG.................................................................1811.001.00------------------------------------------------------------1.00-----------------------------------------------------------------
...................................................TGGGTGGCGGCGGGCTGC.............................................................................................................1811.001.00-----1.00------------------------------------------------------------------------------------------------------------------------
..............TGGACGCCCTGGAGCCCGCCGAC.............................................................................................................................................2311.001.00----1.00-------------------------------------------------------------------------------------------------------------------------
.....................................................................CGGGGGGCGGGAGGCGGCG..........................................................................................191.000.00--------------------------------------------------1.00---------------------------------------------------------------------------
.....................................................................CGGGGGGCGGGAGGCGCGCGGGT......................................................................................2311.001.00----------------------------------1.00-------------------------------------------------------------------------------------------
..................................................................................................................................GCCCTGATCGTGCGCGACCA............................2011.001.00---------1.00--------------------------------------------------------------------------------------------------------------------
...........................................................................................................CTGACGCCCCCCGCCCCGCAGTAT...............................................2411.0010.00-----------------------------------------------------------------------------------1.00------------------------------------------
......................................................................GGGGGGCGGGAGGCGCGCGGGCAAT...................................................................................251.000.00---------------------------------------------------------------------------------1.00--------------------------------------------
.......................................................................GGGGGCGGGAGGCGCGGGGC.......................................................................................201.000.00----1.00-------------------------------------------------------------------------------------------------------------------------
............................................................................................................TGACGCCCCCCGCCCCGCCGTT................................................2211.001.00------------------------------------------------------------------------------------------------------------------------1.00-----
.................................................................CTGCCGGGGGGCGGGCGCC..............................................................................................191.000.00-----------------------------------------------------------------------------------------------------------------------1.00------
...................................................................GCCGGGGGGCGGGAGGCGGCG..........................................................................................211.000.00----1.00-------------------------------------------------------------------------------------------------------------------------
.............................................................................GGGAGGCGCGCGGGCAAG...................................................................................181.000.00------------1.00-----------------------------------------------------------------------------------------------------------------
....TACAAAGTGATGGACGCCCTGGAGCCC...................................................................................................................................................2711.001.00---1.00--------------------------------------------------------------------------------------------------------------------------
.....................................................................CGGGGGGCGGGAGGCGCGCG.........................................................................................2011.001.00-----1.00------------------------------------------------------------------------------------------------------------------------
...................................................TGGGTGGCGGCGGGCGG..............................................................................................................171.000.00---------------------------------1.00--------------------------------------------------------------------------------------------
.........................................................GCGGCGGGCTGCCGGGGGGGGG...................................................................................................221.000.00--------------------------------------------------------------------1.00---------------------------------------------------------
....................................................................................................................................................CAGACCGAGCTGCGGCTGTGCGAGCGCTCC3011.001.00--------------------------------------------------------------1.00---------------------------------------------------------------
............................................................................................................TGACGCCCCCCGCCCCGCA...................................................1911.001.00-----------------------------------------------------------------------------------------------------------------1.00------------
..............................................................................................................................................CGCGACCAGACCGAGCTGCGGC..............2211.001.00-----------------1.00------------------------------------------------------------------------------------------------------------
...........................................................................GCGGGAGGCGCGCGGGCTG....................................................................................191.000.00---------------------------------------------------------------------------------------1.00--------------------------------------
............................................AGTTCGGTGGGTGGCGGCG...................................................................................................................1911.001.00--------------------------------1.00---------------------------------------------------------------------------------------------
...........................................................GGCGGGCTGCCGGGGGGCA....................................................................................................191.000.00----------------------------------------------------1.00-------------------------------------------------------------------------
..................................................................................................................................................ACCAGACCGAGCTGCGGCT.............1911.001.00-------1.00----------------------------------------------------------------------------------------------------------------------
.....................................................................CGGGGGGCGGGAGGCGCGCGGG.......................................................................................2211.001.00-----------------------------------------------------------------------------------------------1.00------------------------------
..................................................................................................................................................ACCAGACCGAGCTGCGG...............1711.001.00----------1.00-------------------------------------------------------------------------------------------------------------------
...............................................................................................TGGCGCCGACGCCTGCGGG................................................................191.000.00-------------------------------------------------------1.00----------------------------------------------------------------------
.......................................................................GGGGGCGGGAGGCGCGCGA........................................................................................191.000.00-------------------------------------------------------------------------1.00----------------------------------------------------
...................................................................GCCGGGGGGCGGGAGGCGGCGG.........................................................................................221.000.00----1.00-------------------------------------------------------------------------------------------------------------------------
..............TGGACGCCCTGGAGCCCGCC................................................................................................................................................2011.001.00-----------------------------------------------1.00------------------------------------------------------------------------------
....................................................................CCGGGGGGCGGGAGGCGCGCGGA.......................................................................................231.000.00---------------1.00--------------------------------------------------------------------------------------------------------------
............................................................................CGGGAGGCGCGCGGGTCGG...................................................................................191.000.00---------------------------------------------------------------1.00--------------------------------------------------------------
..........................................................................................................CCTGACGCCCCCCGCCCCGCG...................................................211.000.00---------------------------1.00--------------------------------------------------------------------------------------------------
...................................................................GCCGGGGGGCGGGAGGCGCG...........................................................................................2011.001.00-1.00----------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................CGCGACCAGACCGAGCTGCGGCT.............2311.001.00-----------------------------------------------------------1.00------------------------------------------------------------------
................................CCGACTGGTGCCAGTTCG................................................................................................................................1811.001.00--------------------------------1.00---------------------------------------------------------------------------------------------
...................................................................GCCGGGGGGCGGGAGTCG.............................................................................................181.000.00------------1.00-----------------------------------------------------------------------------------------------------------------
...CTACAAAGTGATGGACGCCCTGGAGC.....................................................................................................................................................2611.001.00--------------------------------------------------------------------------------------------------------------------1.00---------
...........................................................................................................................................GTGCGCGACCAGACCGAG.....................1811.001.00-----------------------------------------------------------------------------------------------------1.00------------------------
...........................................................................................................................................GTGCGCGACCAGACCGAGCTGCGGC..............2511.001.00----------------1.00-------------------------------------------------------------------------------------------------------------
.................................................................CTGCCGGGGGGCGGGCGCA..............................................................................................191.000.00---------------------------------------------------------------------------------------------------------1.00--------------------
......................................................................................................GACGCCTGACGCCCCCCGCCC.......................................................2111.001.00------------------1.00-----------------------------------------------------------------------------------------------------------
..............TGGACGCCCTGGAGCCCGCCGACTGGTGCCAGC...................................................................................................................................331.000.00-------------------------------1.00----------------------------------------------------------------------------------------------
....................CCCTGGAGCCCGCCGACT............................................................................................................................................1811.001.00----------1.00-------------------------------------------------------------------------------------------------------------------
..........................................................CGGCGGGCTGCCGGGGGGCG....................................................................................................2011.001.00----------------------------------------------------------------------------1.00-------------------------------------------------
...........................................................................................................CTGACGCCCCCCGCCCCGCAGTC................................................2311.0010.00---------------1.00--------------------------------------------------------------------------------------------------------------
............................................................................................................TGACGCCCCCCGCCCCGCAG..................................................2011.001.00--------------------1.00---------------------------------------------------------------------------------------------------------
............................................................................................................TGACGCCCCCCGCCCCGCAGA.................................................2111.001.00--------------------------------------------------------1.00---------------------------------------------------------------------
...........................................................................................................CTGACGCCCCCCGCCCCGCTTT.................................................221.000.00--------------------------------------1.00---------------------------------------------------------------------------------------
..........................................................CGGCGGGCTGCCGGGGGGCAA...................................................................................................211.000.00---------------------------------------------------------------------------------------------------------------------1.00--------
.................................................................CTGCCGGGGGGCGGGCGT...............................................................................................181.000.00-----------------------------1.00------------------------------------------------------------------------------------------------
.................................................................CTGCCGGGGGGCGGGC.................................................................................................161.000.00---------------------------------------------------------------------------1.00--------------------------------------------------
...................................................TGGGTGGCGGCGGGCGC..............................................................................................................171.000.00-----1.00------------------------------------------------------------------------------------------------------------------------
.............................................................CGGGCTGCCGGGGGGCGGGAGG...............................................................................................2211.001.001.00-----------------------------------------------------------------------------------------------------------------------------
.TTCTACAAAGTGATGGACGCCCTGG........................................................................................................................................................2511.001.00---1.00--------------------------------------------------------------------------------------------------------------------------
............................................................................................................TGACGCCCCCCGCCCCGCAAGAT...............................................2311.001.00--------1.00---------------------------------------------------------------------------------------------------------------------
............GATGGACGCCCTGGAGCCCGCCG...............................................................................................................................................2311.001.00--------------------------------------------------------------------------1.00---------------------------------------------------
............................................................................................................TGACGCCCCCCGCCCCGCAGTAA...............................................2311.001.00-------------------------------------1.00----------------------------------------------------------------------------------------
...CTACAAAGTGATGGACGCCCTGGCGC.....................................................................................................................................................261.000.00------------------------------------1.00-----------------------------------------------------------------------------------------
...........................................................GGCGGGCTGCCGGGGGGAGG...................................................................................................201.000.00--------------------------------------------------------------------------------------------------------------1.00---------------
......................................................................................................................................TGATCGTGCGCGACCAGACCGAGCTG..................2611.001.00---1.00--------------------------------------------------------------------------------------------------------------------------
...................................................TGGGTGGCGGCGGGCTGTAG...........................................................................................................201.000.00------------------1.00-----------------------------------------------------------------------------------------------------------
............................................................................................................TGACGCCCCCCGCCCCGCAGAAT...............................................2311.001.00--------------------------1.00---------------------------------------------------------------------------------------------------
.............ATGGACGCCCTGGAGCCCGCCGACTGGCG........................................................................................................................................291.000.00-------------------------------1.00----------------------------------------------------------------------------------------------
...........................................................GGCGGGCTGCCGGGGTATA....................................................................................................191.000.00-----------------------------------------------------1.00------------------------------------------------------------------------
.............................................................................................................................................GCGCGACCAGACCGAGCTGCGG...............2211.001.00-------------------------------------------------1.00----------------------------------------------------------------------------
...................................................................GCCGGGGGGCGGGAGGCGCGCG.........................................................................................2211.001.00-1.00----------------------------------------------------------------------------------------------------------------------------
...........................................................................GCGGGAGGCGCGCGGGC......................................................................................1720.500.50-----0.50------------------------------------------------------------------------------------------------------------------------
..................................................GTGGGTGGCGGCGGG.................................................................................................................1590.110.11---------------------------------------0.11--------------------------------------------------------------------------------------

Antisense strand
CTTCTACAAAGTGATGGACGCCCTGGAGCCCGCCGACTGGTGCCAGTTCGGTGGGTGGCGGCGGGCTGCCGGGGGGCGGGAGGCGCGCGGGCTCCTGGCGCCGACGCCTGACGCCCCCCGCCCCGCAGCCGCCCTGATCGTGCGCGACCAGACCGAGCTGCGGCTGTGCGAGCGCTCC
............................................................(((((..((.((((((((..(((((..(((((.....)).))).)))))..)))))))))))))))....................................................
............................................................61.................................................................128................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		TAX577579(Rovira)
total RNA. (breast)		SRR038857(GSM458540)
D20. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR040042(GSM532927)
G428N. (cervix)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM532889(GSM532889)
G576N. (cervix)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR040030(GSM532915)
G013N. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR191463(GSM715573)
111genomic small RNA (size selected RNA from . (breast)		SRR191441(GSM715551)
106genomic small RNA (size selected RNA from . (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040011(GSM532896)
G529T. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040009(GSM532894)
G727T. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR038863(GSM458546)
MM603. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR040043(GSM532928)
G428T. (cervix)		TAX577738(Rovira)
total RNA. (breast)		SRR444066(SRX128914)
Sample 23cDNABarcode: AF-PP-339: ACG CTC TTC . (cell line)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
................GACGCCCTGGAGCCCGCGTTT............................................................................................................................................. 211.000.00-----------------------------------------------------------------------------------------------------------1.00------------------
............................................................GCGGGCTGCCGGGGGGCGC................................................................................................... 191.000.00-------1.00----------------------------------------------------------------------------------------------------------------------
...........................................................................................................CTGACGCCCCCCGCCCT...................................................... 171.000.00------------1.00-----------------------------------------------------------------------------------------------------------------
................................................................GCTGCCGGGGGGCGGGGCCG.............................................................................................. 201.000.00-----------------1.00------------------------------------------------------------------------------------------------------------
................................................................GCTGCCGGGGGGCGGGCC................................................................................................ 181.000.00------------------------------------------------1.00-----------------------------------------------------------------------------
....................................................................................................................CCCGCCCCGCAGCCGCCT............................................ 181.000.00-----------------------------------------------------------------------1.00------------------------------------------------------
................................................................................................................................CCGCCCTGATCGTGCGTG................................ 181.000.00----------------------------------------------------------------------1.00-------------------------------------------------------
........................................................GGCGGCGGGCTGCCGGG......................................................................................................... 171.000.00-----------------------------------1.00------------------------------------------------------------------------------------------
..............................................................................................................ACGCCCCCCGCCCCGGGGC................................................. 191.000.00------------------------------------------------------------------------------------1.00-----------------------------------------
........................................................................GGGGCGGGAGGCGCGTGG........................................................................................ 181.000.00------------------------------------------------------------------1.00-----------------------------------------------------------
................................................................................................................GCCCCCCGCCCCGCATGT................................................ 181.000.00-------------------------------------------------------------------------------------------------------------------------1.00----
.........................................................................CGCGCGCCTCCCGCCC......................................................................................... 1660.170.17----------------------------------------------------------------------------------------------------------------------------0.17-
...................................................................................................................GCGGCTGCGGGGCGGGG.............................................. 1760.170.17-----------------------------------------------------------------------------------------------------------------------------0.17