ID: uc004fiu.2_intron_4_0_chrX_153052609_r
GENE: (1)
chrX:153052559-153052968-


(6)
B-CELL
(1)
BRAIN
(2)
BREAST
(23)
CELL-LINE
(2)
CERVIX
(3)
HEART
(2)
HELA
(4)
LIVER
(2)
OTHER
(12)
SKIN
(2)
UTERUS
(1)
XRN.ip

Sense strand
CAGGAGAGCGGGCGCAAGAAAGTGACGGCCGTGCACAAGGCCAACATCATGTATGTCCCCTGACCTCTCTGCGAGCAGTCCAGAAGCAGCTGCAGTGGCCTGCTTGGGCCTGCTCTGAGGGATTTGTGGTCCAAAAGCCCAGCTACCCACCGAGGTGCCACCCTAGGCGAGTGCCCTGTTGCCCTCGAGGCCTTGCCAGAACCCACACTTAGGGGAGGTGGGGTGGGATTCTGTCCATTTTGCTGGTGAGGGACAGGTTAGAATTCAGACCCCAGCCTCCTGGGGCCCTCTGCACGCCCCGTCCCTCTGGCTGACTGTTGCGATGGCCAAGCTGGTGTCCTATTCCTAACCCCCCACCAGGAAACTGGGCGATGGGCTTTTCCTCCAGTGCTGCAGGGAGGTGGCAGCCC
.............................................................................................................................................................................................................(((((.....)))))((((.....(((((((.((........)).))))))).....))))................................................................................................................................................
.............................................................................................................................................................................................................206.............................................................270..........................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
TAX577744(Rovira)
total RNA. (breast)
SRR038863(GSM458546)
MM603. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR029131(GSM416760)
MCF7. (cell line)
SRR038856(GSM458539)
D11. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
........................................................................................................................................................................................................................................................AGGGACAGGTTAGAATTA................................................................................................................................................18141.003.0022.00-2.002.001.00-1.003.00--2.00--1.002.00-1.00-------------------------1.001.00-1.00-------1.00-------
........................................................................................................................................................................................................................................................AGGGACAGGTTAGAATTAT...............................................................................................................................................19130.003.009.00-3.00-1.00-1.00-3.00------2.00-1.00-2.00----1.00----------1.00-----1.00----1.001.00---1.00---1.00-1.00---
........................................................................................................................................................................................................................................................AGGGACAGGTTAGAATTATC..............................................................................................................................................20117.003.003.008.00--------1.00------1.001.00--1.00----------1.00---------------------1.00------
.........................................................................................................................................................................................................................................................GGGACAGGTTAGAATTA................................................................................................................................................1710.000.004.00-1.00--3.00---1.00--1.00------------------------------------------------
.........................................................................................................................................................................................................................................................GGGACAGGTTAGAATTAT...............................................................................................................................................185.000.002.00-----1.00--1.00-------------1.00-------------------------------------
.........................................................................................................................................................................................................................................................GGGACAGGTTAGAATTATC..............................................................................................................................................193.000.00---2.00----------------------------------------1.00----------------
........................................................................................................................................................................................................................................................AGGGACAGGTTAGAATT.................................................................................................................................................1713.003.001.00-1.00------1.00---------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................GAAACTGGGCGATGGGCTTTTCCTCC........................2613.003.003.00------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................TCCTCCAGTGCTGCAAAG............182.000.00-----------2.00-------------------------------------------------
........................................................................................................................................................................................................................................................AGGGACAGGTTAGAATTAAA..............................................................................................................................................2012.003.002.00------------------------------------------------------------
........................................................................................................................................................................................................................................................AGGGACAGGTTAGAATTATCC.............................................................................................................................................2112.003.00------------1.00------------------------------------1.00-----------
.......................................................................................................................................................................................................................................................GAGGGACAGGTTAGAATTATC..............................................................................................................................................211.000.00--------------------1.00----------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................GAAACTGGGCGATGGGCTT...............................1911.001.00----------------------1.00--------------------------------------
.AGGAGAGCGGGCGCAAGAAAGTGACG...............................................................................................................................................................................................................................................................................................................................................................................................2611.001.00------------------------------------1.00------------------------
........................................................................................................................................................................................................................................................AGGGACAGGTTAGAAGAA................................................................................................................................................181.000.00-----------------------------1.00-------------------------------
........................................................................................................................................................................................................................................................AGGGACAGGTTAGAATTATAA.............................................................................................................................................2111.003.00----------------------------1.00--------------------------------
..................................................................................................................................................................................................................AGGGGAGGTGGGGTGGGATT....................................................................................................................................................................................2011.001.00----1.00--------------------------------------------------------
.........................................................................................................................................................................................................................................................GGGACAGGTTAGAATTATA..............................................................................................................................................191.000.00--------------------------------------------------------1.00----
..................................................................................................................................................................................................................AGGGGAGGTGGGGTGCAT......................................................................................................................................................................................181.000.00------------------------------------------------1.00------------
..................................................................................................................................................................................................................AGGGGAGGTGGGGTGGGAAGGC..................................................................................................................................................................................221.000.00----------------1.00--------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................ACTGGGCGATGGGCTTTTC............................1911.001.00----------------------------------------------------1.00--------
........................................................................................................................................................................................................................................................AGGGACAGGTTAGAAAGAA...............................................................................................................................................191.000.00------------------1.00------------------------------------------
......................................................................................................................................................................................................................................................................................................CGCCCCGTCCCTCTGCTCT.................................................................................................191.000.00----------------------------------1.00--------------------------
.........................................................................................................................................................................................................................................................................................................................................................................AAACTGGGCGATGGGCTTTTCC...........................2211.001.00--------------------------------------------------1.00----------
.........GGGCGCAAGAAAGTGACGGCCG...........................................................................................................................................................................................................................................................................................................................................................................................2211.001.00-------------------------------1.00-----------------------------
...................AAGTGACGGCCGTGCACAAGG..................................................................................................................................................................................................................................................................................................................................................................................2111.001.00----1.00--------------------------------------------------------
...GAGAGCGGGCGCAAGAAAGTG..................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00---------------------------1.00---------------------------------
................................................................................................................................................................................................................TTAGGGGAGGTGGGGTTTT.......................................................................................................................................................................................191.000.00--------------------------------------1.00----------------------
.........................................................................AGCAGTCCAGAAGCAGCTGC.............................................................................................................................................................................................................................................................................................................................2020.500.50-----------------------------------------------------------0.50-

Antisense strand
CAGGAGAGCGGGCGCAAGAAAGTGACGGCCGTGCACAAGGCCAACATCATGTATGTCCCCTGACCTCTCTGCGAGCAGTCCAGAAGCAGCTGCAGTGGCCTGCTTGGGCCTGCTCTGAGGGATTTGTGGTCCAAAAGCCCAGCTACCCACCGAGGTGCCACCCTAGGCGAGTGCCCTGTTGCCCTCGAGGCCTTGCCAGAACCCACACTTAGGGGAGGTGGGGTGGGATTCTGTCCATTTTGCTGGTGAGGGACAGGTTAGAATTCAGACCCCAGCCTCCTGGGGCCCTCTGCACGCCCCGTCCCTCTGGCTGACTGTTGCGATGGCCAAGCTGGTGTCCTATTCCTAACCCCCCACCAGGAAACTGGGCGATGGGCTTTTCCTCCAGTGCTGCAGGGAGGTGGCAGCCC
.............................................................................................................................................................................................................(((((.....)))))((((.....(((((((.((........)).))))))).....))))................................................................................................................................................
.............................................................................................................................................................................................................206.............................................................270..........................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
TAX577744(Rovira)
total RNA. (breast)
SRR038863(GSM458546)
MM603. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR029131(GSM416760)
MCF7. (cell line)
SRR038856(GSM458539)
D11. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
...................................................................................................................................................................................................................GGGGAGGTGGGGTGGGAGCGC.................................................................................................................................................................................. 212.000.00-------------------------1.00-------------1.00---------------------
....................................................................................................................................AAAAGCCCAGCTACCCATTT.................................................................................................................................................................................................................................................................. 201.000.00----------------------------------------1.00--------------------
....................................................................................................................................................................................................................................................................................................................GGCTGACTGTTGCGATGGCGGAG............................................................................... 231.000.00-------------------------------------1.00-----------------------
...................................................................................................................................................................................................................GGGGAGGTGGGGTGGGGCGC................................................................................................................................................................................... 201.000.00--------------------------1.00----------------------------------
...................................................................................................................................................................................................................................................................................................GCACGCCCCGTCCCTTGC..................................................................................................... 181.000.00-------------1.00-----------------------------------------------
...................................................................................................................................................................................................................GGGGAGGTGGGGTGGGGCG.................................................................................................................................................................................... 191.000.00------------------------------1.00------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................ACCTCCCTGCAGCACTG........ 1711.001.00----------------------------------------------------------1.00--
.........................................................................................................................................CGGTGGGTAGCTGGG.................................................................................................................................................................................................................................................................. 1550.200.20------------------------------------------------------------0.20