ID: uc004fik.2_intron_14_0_chrX_153049340_f
GENE: (15)
chrX:153049290-153049478+


(1)
AGO2.ip
(6)
BREAST
(8)
CELL-LINE
(1)
CERVIX
(3)
HEART
(1)
OTHER
(7)
SKIN

Sense strand
GCGGGACCTGCAGAGGCTGGAGGCCATGGAGGCTGCCACCCAGGCTGAGGGTGAGGGGCCACAGAGGGTGATGGGCCGTGGAGCGCAGCAAAGGCTGCAAGACATCTGCTCAGCAGCTGCCTCCACCCCGTCTCCCCAGACTCTGGCTTGAGACTAGACGGGGGCAGCGGCTCCACATCCTCTTCAGGC
..................................................(((......)))...(((.((((((..((((((.(((((....((((..((....))...)))).))))))))))))))))).))).....................................................
..................................................51......................................................................................139................................................
SizePerfect hitTotal NormPerfect NormSRR189783SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189785SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189782SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189787SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR040009(GSM532894)
G727T. (cervix)
TAX577739(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR343334SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
........................................................GGCCACAGAGGGTGATAGCC.................................................................................................................201505.000.00866.00169.00103.0088.0086.0045.0042.0042.0037.0010.007.005.00--1.002.00---1.00-----1.00------
.........................................................GCCACAGAGGGTGATAGCC.................................................................................................................1945.000.0024.003.002.004.003.003.001.001.001.001.00-1.00-1.00------------------
........................................................GGCCACAGAGGGTGATAGTC.................................................................................................................2012.000.004.001.00-6.001.00---------------------------
........................................................GGCCACAGAGGGTGATATCC.................................................................................................................208.000.005.001.00----1.00----1.00--------------------
........................................................GGCCACAGAGGGTGATACCC.................................................................................................................207.000.007.00-------------------------------
........................................................GGCCACAGAGGGTGATAGC..................................................................................................................195.000.002.001.001.00-------------------1.00---------
.........................................................GCCACAGAGGGTGATATCC.................................................................................................................195.000.005.00-------------------------------
.........................................................GCCACAGAGGGTGATACCC.................................................................................................................193.000.003.00-------------------------------
........................................................GGCCACAGAGGGTGATAGCA.................................................................................................................202.000.002.00-------------------------------
........................................................GGCCACAGAGGGTGATAGCT.................................................................................................................202.000.001.00--1.00----------------------------
........................................................GGCCACAGAGGGTGATTGCC.................................................................................................................202.000.002.00-------------------------------
........................................................GGCCACAGAGGGTGATAGGC.................................................................................................................202.000.00-1.00-------1.00----------------------
.....................................................................GATGGGCCGTGGAGCGT.......................................................................................................171.000.00--------------1.00-----------------
.....................................................................................................................TGCCTCCACCCCGTCTCCCCAGT.................................................231.000.00---------------------------1.00----
.........................................................GCCACAGAGGGTGATAGC..................................................................................................................181.000.00----------------1.00---------------
.........................................................GCCACAGAGGGTGATAGCT.................................................................................................................191.000.00---1.00----------------------------
............................................................................CGTGGAGCGCAGCAAAGGC..............................................................................................1911.001.00------------------------1.00-------
........................................................GGCCACAGAGGGTGATAGTT.................................................................................................................201.000.001.00-------------------------------
.........................................................GCCACAGAGGGTGATAG...................................................................................................................171.000.00---------------------1.00----------
........................................................GGCCACAGAGGGTGATGGGC.................................................................................................................2011.001.001.00-------------------------------
....................................................................................................................................TCCCCAGACTCTGGCATG.......................................181.000.00-----------------------------1.00--
.......................................................................................................................CCTCCACCCCGTCTCCCCAGT.................................................211.000.00-----------------------1.00--------
........................................................GGCCACAGAGGGTGATGGCC.................................................................................................................201.000.001.00-------------------------------
................................................................................................................GCAGCTGCCTCCACCCCGTCTCCA.....................................................241.000.00--------------------1.00-----------
........................................................GGCCACAGAGGGTGATTGGC.................................................................................................................201.000.001.00-------------------------------
...............................................................................................................AGCAGCTGCCTCCACCTT............................................................181.000.00---------1.00----------------------
................................................................AGGGTGATGGGCCGTGGAGCGCAGC....................................................................................................2511.001.00----------------------------1.00---
........................................................GGCCACAGAGGGTGATATCT.................................................................................................................201.000.00-1.00------------------------------
........................................................GGCCACAGAGGGTGATCGCC.................................................................................................................201.000.00---1.00----------------------------
........................................................GGCCACAGAGGGTGATAGAC.................................................................................................................201.000.001.00-------------------------------

Antisense strand
GCGGGACCTGCAGAGGCTGGAGGCCATGGAGGCTGCCACCCAGGCTGAGGGTGAGGGGCCACAGAGGGTGATGGGCCGTGGAGCGCAGCAAAGGCTGCAAGACATCTGCTCAGCAGCTGCCTCCACCCCGTCTCCCCAGACTCTGGCTTGAGACTAGACGGGGGCAGCGGCTCCACATCCTCTTCAGGC
..................................................(((......)))...(((.((((((..((((((.(((((....((((..((....))...)))).))))))))))))))))).))).....................................................
..................................................51......................................................................................139................................................
SizePerfect hitTotal NormPerfect NormSRR189783SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189785SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189782SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189787SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR040009(GSM532894)
G727T. (cervix)
TAX577739(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR343334SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
.....................................................................................................................................................................GCCTGAAGAGGATGTGGAGCCGCT 2412.002.00------------2.00-------------------
............................................................................................................................ACCCCGTCTCCCCAGAGT............................................... 181.000.00-------------1.00------------------
................................................................................................................................................................GGGGCAGCGGCTCCACGC........... 181.000.00-----------------1.00--------------
..................................GCCACCCAGGCTGAGTCG......................................................................................................................................... 181.000.00------------------1.00-------------
................................................................AGGGTGATGGGCCGTG............................................................................................................. 161.000.00--------------------------1.00-----
.................................................................................................................CAGCTGCCTCCACCCCGGGC........................................................ 201.000.00-1.00------------------------------
................................................................................................................................................................TGTGGAGCCGCTGCCCC............ 1720.500.50------------------------------0.50-
......................................................................................................................................................................GAGGATGTGGAGCCGC....... 1650.200.20-------------------------------0.20