ID: uc004fhn.1_intron_1_0_chrX_152719967_r
GENE: (9)
chrX:152719917-152720384-


(1)
AGO2.ip
(1)
BRAIN
(2)
BREAST
(10)
CELL-LINE
(2)
CERVIX
(4)
HEART
(1)
HELA
(2)
OTHER
(23)
SKIN

Sense strand
CCTTCCAACCTCTGACTGGCTGGTCCTGTGAGACCCCTCGATCAGGGATGGTGAGGCCACAGCCCTCTCCTGTCCATTTTTCTTGGGACATTTATTTTCCCCCCTTGCCAATTGCTGGGGCTGGGAGGACACGCAGTGCTGGCTGGCATGTCCCTAGGCATCGAGGGTTGCCAGAGCGACATGAGAGTGTGGCATCCCCACTGGGCCAGGAAGAGGGGACTTAGGTCCGAGAACTCTGATTGGTGACTTCCCCGCTGGGAGTTCTGTCCCTCACCCTTGGCTGTCTTTCAGGTGAATGCCACCTGATCAGTGTGAGTGGGGGTGGGAAGCAGGAGATGCCGTCGCTACGTGAGACCAGCGGCATTTAGTGCCTGCTCGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAGCTGCTGCAAGTGGTCATGGCAGTTGCTGACACCTCTGCGAAGGCCGTGGA
.......................................................((((((((.((....(((((..........)))))....(((((((((((.((.....)).))))..))))))).....)).))))..)))).................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150............................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040016(GSM532901)
G645N. (cervix)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
...................................................................................................................TGGGGCTGGGAGGACTCTG..............................................................................................................................................................................................................................................................................................................................................1931.000.009.002.003.004.004.003.00----------1.00--------1.00-1.001.00----1.00-----1.00-----
..................................................................................................................CTGGGGCTGGGAGGACTCTG..............................................................................................................................................................................................................................................................................................................................................209.000.004.00----1.00--------1.002.00-1.00---------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................CCCTCCCTCCCTCCCTCCCGGCT.....................................................235.000.00-5.00-------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................CCCTCCCTCCCTCCCTCCCTCCCTATTC............................................................283.000.00--------3.00------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................CCCTCCCTCCCTCCCTCCCTCCCTACCA............................................................283.000.00--3.00------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................CTGCTCGCTCCCTCCCCG...............................................................................182.000.00------------2.00--------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................CTCGCTCCCTCCCTCCCTCCGC........................................................................222.000.00------------------------------1.00----1.00---------
................................................................................................................................................................................................................................................................................................................GATCAGTGTGAGTGGGGGTGGGAAGC..........................................................................................................................................2611.001.00------------------1.00--------------------------
...................................................................................................................TGGGGCTGGGAGGACACTG..............................................................................................................................................................................................................................................................................................................................................191.000.00------------------------------------------1.00--
..................................................................................................................................................................................................................................................................................................................................................CCGTCGCTACGTGAGGC.................................................................................................................171.000.00------1.00--------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................CTGCTCGCTCCCTCCCCACC.............................................................................201.000.00----------------------1.00----------------------
.....................................................................................................................................................................................................................................................................................................................................................................................GCTCGCTCCCTCCCTCCGCC...........................................................................201.000.00---------1.00-----------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGACACCTCTGCGAAGGCC.....2511.001.00----------------------------------------1.00----
................................................................................................................................................................................................................................................................................................................................GGTGGGAAGCAGGAGGCGT.................................................................................................................................191.000.00-------------1.00-------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGACACCTCTGCGAAGG.......2311.001.00--------------------------1.00------------------
....................................................................................................................................................................................................................................................................................................................................................................................TGCTCGCTCCCTCCCCGCC.............................................................................191.000.00--------------------------------1.00------------
..............................................................................................................................................................................AGCGACATGAGAGTGGTTG...................................................................................................................................................................................................................................................................................191.000.00-----------------------1.00---------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGACACCTCTGCGAAGGC......2311.001.00---------------------1.00-----------------------
....................................................................................................................................................................................................................................................................................................................................................................................................CCCTCCCTCCCTCCCTCCCTCCCTCCCCTTG.................................................311.000.00-----------------------------1.00---------------
..................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCTCCCTCCCCAGCGC...............................................191.000.00---------1.00-----------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................CTCGCTCCCTCCCTCCGCTT..........................................................................201.000.00--------------------1.00------------------------
....................................................................................................................................................................................................................................................................................................................................................................................TGCTCGCTCCCTCCCCACC.............................................................................191.000.00----------------------------------1.00----------
......................................................GGCCACAGCCCTCTCCTCC...........................................................................................................................................................................................................................................................................................................................................................................................................191.000.00------------------------------------1.00--------
.........................................................................................................................................................................................................................................................CCCCGCTGGGAGTTCT...........................................................................................................................................................................................................1630.330.33--------------------------------------------0.33
........................................................................................................................................................................................................................................................................................................................................................................................CGCTCCCTCCCTCCCTCCCTCCCTCC..................................................................2690.110.11---------0.11-----------------------------------

Antisense strand
CCTTCCAACCTCTGACTGGCTGGTCCTGTGAGACCCCTCGATCAGGGATGGTGAGGCCACAGCCCTCTCCTGTCCATTTTTCTTGGGACATTTATTTTCCCCCCTTGCCAATTGCTGGGGCTGGGAGGACACGCAGTGCTGGCTGGCATGTCCCTAGGCATCGAGGGTTGCCAGAGCGACATGAGAGTGTGGCATCCCCACTGGGCCAGGAAGAGGGGACTTAGGTCCGAGAACTCTGATTGGTGACTTCCCCGCTGGGAGTTCTGTCCCTCACCCTTGGCTGTCTTTCAGGTGAATGCCACCTGATCAGTGTGAGTGGGGGTGGGAAGCAGGAGATGCCGTCGCTACGTGAGACCAGCGGCATTTAGTGCCTGCTCGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAGCTGCTGCAAGTGGTCATGGCAGTTGCTGACACCTCTGCGAAGGCCGTGGA
.......................................................((((((((.((....(((((..........)))))....(((((((((((.((.....)).))))..))))))).....)).))))..)))).................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150............................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040016(GSM532901)
G645N. (cervix)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
.......................................................................................................................................................................................................................................................................................................................................................................................TCGCTCCCTCCCTCCCTCCCGA....................................................................... 223.000.00-------------1.001.00-1.00----------------------------
..TTCCAACCTCTGACTGCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................... 192.000.00----------2.00----------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................TCGCTCCCTCCCTCCCTCAATT....................................................................... 222.000.00-----------2.00---------------------------------
............................................................AGCCCTCTCCTGTCCATCTC.................................................................................................................................................................................................................................................................................................................................................................................................... 202.000.00-------2.00-------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................CCCTCCCTCCCCAGCTTGG............................................. 191.000.00-------1.00-------------------------------------
.......................................................................................................................................................................................................................................................................................................................GTGAGTGGGGGTGGGAACT.......................................................................................................................................... 191.000.00--------------------------------------1.00------
.............................................................................................................................................................................................................................................................................................................................GGGGGTGGGAAGCAGGGCT.................................................................................................................................... 191.000.00------------------------1.00--------------------
.......................................................................................................................................................................................................................................................TTCCCCGCTGGGAGTTCCA.......................................................................................................................................................................................................... 191.000.00-------------------------------1.00-------------
.......................................................................................................................................................................................................................................................................................................................................................................................TCGCTCCCTCCCTCCCTCCCA........................................................................ 211.000.00-------------------1.00-------------------------
.................................................................................................TCCCCCCTTGCCAATGTCC................................................................................................................................................................................................................................................................................................................................................................ 191.000.00-----------------------------------------1.00---
..................................................................................................................................................................................................................................................................GAGTTCTGTCCCTCACTG................................................................................................................................................................................................ 181.000.00-------------------------------------1.00-------
.......................................................................................................................................................................................................................................................................................................................................................................................TCGCTCCCTCCCTCCCTCCT......................................................................... 201.000.00------1.00--------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................TCGCTCCCTCCCTCCCTCCC......................................................................... 201.000.00------1.00--------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................AGGGAGGGAGCGAGCAGG................................................................................ 1820.500.50-------------------------------------------0.50-
........................................................................................................................................................................................................................................................................................................................................................................................................TGGGGAGGGAGGGAGGGAGGGAGGG................................................... 2590.110.11-----------------0.11---------------------------