ID: uc004fgh.1_intron_4_0_chrX_151922148_r
GENE: MAGEA2(1)
chrX:151922098-151922361-


(2)
AGO2.ip
(1)
B-CELL
(6)
BREAST
(24)
CELL-LINE
(3)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(3)
HELA
(1)
LIVER
(1)
OTHER
(2)
RRP40.ip
(6)
SKIN
(1)
XRN.ip

Sense strand
GGCCTGACGTCGGCGGAGGGAAGCAGGCGCAGGCTCCGTGAGGAGGCAAGGTAAGACGCCGAGGGAGGACTGAGGCGGGCCTCACCCCAGACAGAGGGCCCCCAATAATCCAGCGCTGCCTCTGCTGCCGGGCCTGGACCACCCTGCAGGGGAAGACTTCTCAGGCTCAGTCGCCACCACCTCACCCCGCCACCCCCCGCCGCTTTAACCGCAGGGAACTCTGGCGTAAGAGCTTTGTGTGACCAGGGCAGGGCTGGTTAGAAG
............................................................((((...(((((((.(((((((.....(((.((((((((...............))..)))))))))..)))))))......((((.(((((....)))))))))))))))).......)))).................................................................................
...........................................................60.........................................................................................................................183...............................................................................
SizePerfect hitTotal NormPerfect NormGSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189784SRR189782GSM956925PAZD5SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189783SRR040029(GSM532914)
G026T. (cervix)
TAX577740(Rovira)
total RNA. (breast)
TAX577739(Rovira)
total RNA. (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR038857(GSM458540)
D20. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR343334SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
TAX577590(Rovira)
total RNA. (breast)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR038860(GSM458543)
MM426. (cell line)
SRR038856(GSM458539)
D11. (cell line)
SRR038862(GSM458545)
MM472. (cell line)
GSM532879(GSM532879)
G659N. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................................................................................................................................................TCAGGCTCAGTCGCCCCCG.....................................................................................1915.000.00-11.003.00--1.00-----------------------------------------------
................................................................................................................................................................TCAGGCTCAGTCGCCTCCC.....................................................................................1910.000.00-1.006.00--2.00-------1.00---------------------------------------
................................................................................................................................................................TCAGGCTCAGTCGCCACCCG....................................................................................203.000.00-1.002.00--------------------------------------------------
................................................................................................................................................................TCAGGCTCAGTCGCCCGAT.....................................................................................192.000.00--1.00----------------1.00---------------------------------
................................................................................................................................................................TCAGGCTCAGTCGCCCG.......................................................................................172.000.00--2.00--------------------------------------------------
................................................................................................................................................................TCAGGCTCAGTCGCCCCCT.....................................................................................192.000.00-2.00---------------------------------------------------
................................................................GAGGACTGAGGCGGGCCT......................................................................................................................................................................................1851.201.20-------------------------------0.80-0.20----------------0.20--
...............................................................GGAGGACTGAGGCGGGAGAG.....................................................................................................................................................................................201.000.00-----------------1.00-----------------------------------
.................................................................AGGACTGAGGCGGGCCTCACA..................................................................................................................................................................................211.000.00----------1.00------------------------------------------
.........TCGGCGGAGGGAAGCTT..............................................................................................................................................................................................................................................171.000.00-------1.00---------------------------------------------
................................................................................................................................................................TCAGGCTCAGTCGCCACCCGCT..................................................................................221.000.00-1.00---------------------------------------------------
................................................................................................................................................................TCAGGCTCAGTCGCCCTCA.....................................................................................191.000.00--1.00--------------------------------------------------
................................................................................................................................................................TCAGGCTCAGTCGCCACCCGAT..................................................................................221.000.00--1.00--------------------------------------------------
..............GGAGGGAAGCAGGCGCAGT.......................................................................................................................................................................................................................................191.000.00----1.00------------------------------------------------
...........................................................................................................................................................................................CGCCACCCCCCGCCGGG............................................................171.000.00------------------1.00----------------------------------
................................................................................................................................................................TCAGGCTCAGTCGCCT........................................................................................161.000.00--------------------1.00--------------------------------
................................................................................................................................................................TCAGGCTCAGTCGCCAAC......................................................................................181.000.00-1.00---------------------------------------------------
...........................................................................................................................................................................................CGCCACCCCCCGCCGCTGGAG........................................................211.000.00-------1.00---------------------------------------------
..............GGAGGGAAGCAGGCGCGCAC......................................................................................................................................................................................................................................201.000.00---------------1.00-------------------------------------
.................................................................................................................................................................................................................................................ACCAGGGCAGGGCTGGGGCC...201.000.00------------------------1.00----------------------------
................................................................................................................................................................TCAGGCTCAGTCGCCCCGG.....................................................................................191.000.00-1.00---------------------------------------------------
................................................................................................................................................................TCAGGCTCAGTCGCCACCCGA...................................................................................211.000.00--1.00--------------------------------------------------
.......................................................................................................................................................................................................................................................GCAGGGCTGGTTAGAGCGG191.000.00--------1.00--------------------------------------------
...CTGACGTCGGCGGAGGGAAGCAG..............................................................................................................................................................................................................................................2321.001.00------------1.00----------------------------------------
...............................................................................................................................................................................................................ACCGCAGGGAACTCTGGCG......................................1921.001.00---------1.00-------------------------------------------
................................................................................................................................................................TCAGGCTCAGTCGCCCGGG.....................................................................................191.000.00-1.00---------------------------------------------------
................................................................................................................................................................TCAGGCTCAGTCGCCCACG.....................................................................................191.000.00-1.00---------------------------------------------------
................................................................................................................................................................................................................................CGTAAGAGCTTTGTGTGACCAGGGA...............251.000.00-----------1.00-----------------------------------------
................................................................................................................................................................TCAGGCTCAGTCGCCCGA......................................................................................181.000.00--1.00--------------------------------------------------
........GTCGGCGGAGGGAAGCGGC.............................................................................................................................................................................................................................................191.000.00----------------------------1.00------------------------
.............................................................AGGGAGGACTGAGGCGGGCCT......................................................................................................................................................................................2150.800.80----0.20---------------------------0.60--------------------
............GCGGAGGGAAGCAGGCGC..........................................................................................................................................................................................................................................1820.500.50---------------------0.50-------------------------------
.....GACGTCGGCGGAGGGAAGCAGG.............................................................................................................................................................................................................................................2220.500.50--------------------------------------0.50--------------
.......................................GAGGAGGCAAGGTAAGAC...............................................................................................................................................................................................................1840.500.50----0.50------------------------------------------------
.....................................GTGAGGAGGCAAGGTAAGAC...............................................................................................................................................................................................................2040.500.50----------0.50------------------------------------------
......ACGTCGGCGGAGGGAAGCA...............................................................................................................................................................................................................................................1920.500.50---------------------------------0.50-------------------
........GTCGGCGGAGGGAAGCAGGC............................................................................................................................................................................................................................................2020.500.50----0.50------------------------------------------------
.........TCGGCGGAGGGAAGCAGGCGC..........................................................................................................................................................................................................................................2120.500.50---------------------0.50-------------------------------
......ACGTCGGCGGAGGGAAGC................................................................................................................................................................................................................................................1840.500.50---------0.25------------------------0.25------------------
..CCTGACGTCGGCGGAGGGAAGCAGGCGCAG........................................................................................................................................................................................................................................3020.500.50---------------------------------------0.50-------------
.................................................................AGGACTGAGGCGGGCCTC.....................................................................................................................................................................................1850.400.40-----------------------------------------------0.200.20----
...............................................................................CCTCACCCCAGACAGAGGGC.....................................................................................................................................................................2030.330.33------------------------------------------0.33----------
................................................................GAGGACTGAGGCGGGCCTCACCCCAG..............................................................................................................................................................................2630.330.33------------0.33----------------------------------------
.................................................................AGGACTGAGGCGGGCCTCACCC.................................................................................................................................................................................2230.330.33-----------0.33-----------------------------------------
..........................................................................................ACAGAGGGCCCCCAATAATCCA........................................................................................................................................................2230.330.33----------------------------------------0.33------------
................AGGGAAGCAGGCGCAGGCTCCG..................................................................................................................................................................................................................................2230.330.33-------------------------------------0.33---------------
..........CGGCGGAGGGAAGCAGGCG...........................................................................................................................................................................................................................................1930.330.33------------------------------0.33----------------------
.........................GGCGCAGGCTCCGTGAGGAGGCA........................................................................................................................................................................................................................2330.330.33-----------------------------------------0.33-----------
..................................TCCGTGAGGAGGCAAGGTAAG.................................................................................................................................................................................................................2130.330.33----0.33------------------------------------------------
.GCCTGACGTCGGCGGAGGGA...................................................................................................................................................................................................................................................2040.250.25--------------------------------------------0.25--------
.........................................GGAGGCAAGGTAAGACG..............................................................................................................................................................................................................1740.250.25----0.25------------------------------------------------
.......CGTCGGCGGAGGGAAGC................................................................................................................................................................................................................................................1740.250.25---------0.25-------------------------------------------
...CTGACGTCGGCGGAGGGAA..................................................................................................................................................................................................................................................1940.250.25-------------------------------------------0.25---------
.....GACGTCGGCGGAGGGAAGC................................................................................................................................................................................................................................................1940.250.25---------0.25-------------------------------------------
.........................................................GCCGAGGGAGGACTGAG..............................................................................................................................................................................................1740.250.25----0.25------------------------------------------------
................................................................GAGGACTGAGGCGGGCC.......................................................................................................................................................................................1750.200.20------------------------------0.20----------------------
..............................................................GGGAGGACTGAGGCGGGCCT......................................................................................................................................................................................2050.200.20--------------------------------0.20--------------------
....TGACGTCGGCGGAGGGA...................................................................................................................................................................................................................................................1750.200.20----------------------------------0.20------------------
.....GACGTCGGCGGAGGGA...................................................................................................................................................................................................................................................1650.200.20---------0.20-------------------------------------------
..............................................................GGGAGGACTGAGGCGGGC........................................................................................................................................................................................1850.200.20----0.20------------------------------------------------
................................................................GAGGACTGAGGCGGGCCTCAC...................................................................................................................................................................................2150.200.20----------------------------------------------0.20------
.................................................................AGGACTGAGGCGGGCC.......................................................................................................................................................................................1650.200.20----------------------------------0.20------------------
.................................................................AGGACTGAGGCGGGCCT......................................................................................................................................................................................1750.200.20------------------------------0.20----------------------
.................................................................AGGACTGAGGCGGGCCTCA....................................................................................................................................................................................1950.200.20-------------------------------------------------0.20---
................................................................GAGGACTGAGGCGGGCCTCA....................................................................................................................................................................................2050.200.20------------------------------0.20----------------------
............................................................GAGGGAGGACTGAGGCGGGCCTCA....................................................................................................................................................................................2450.200.20-------------------------------------0.20---------------
...................................................................................ACCCCAGACAGAGGGC.....................................................................................................................................................................1670.140.14----------------------------------------------------0.14

Antisense strand
GGCCTGACGTCGGCGGAGGGAAGCAGGCGCAGGCTCCGTGAGGAGGCAAGGTAAGACGCCGAGGGAGGACTGAGGCGGGCCTCACCCCAGACAGAGGGCCCCCAATAATCCAGCGCTGCCTCTGCTGCCGGGCCTGGACCACCCTGCAGGGGAAGACTTCTCAGGCTCAGTCGCCACCACCTCACCCCGCCACCCCCCGCCGCTTTAACCGCAGGGAACTCTGGCGTAAGAGCTTTGTGTGACCAGGGCAGGGCTGGTTAGAAG
............................................................((((...(((((((.(((((((.....(((.((((((((...............))..)))))))))..)))))))......((((.(((((....)))))))))))))))).......)))).................................................................................
...........................................................60.........................................................................................................................183...............................................................................
SizePerfect hitTotal NormPerfect NormGSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189784SRR189782GSM956925PAZD5SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189783SRR040029(GSM532914)
G026T. (cervix)
TAX577740(Rovira)
total RNA. (breast)
TAX577739(Rovira)
total RNA. (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR038857(GSM458540)
D20. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR343334SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
TAX577590(Rovira)
total RNA. (breast)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR038860(GSM458543)
MM426. (cell line)
SRR038856(GSM458539)
D11. (cell line)
SRR038862(GSM458545)
MM472. (cell line)
GSM532879(GSM532879)
G659N. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................................................................................................................................CGGCGGGGGGTGGCGGGGTG.............................................................. 20312.3312.33---11.67-------------------------------0.330.33----------------
.........................................................................................................................................................................................CCCGCCACCCCCCGCCGATG........................................................... 2011.000.0011.00----------------------------------------------------
.........................................................................................................................................................................................CCCGCCACCCCCCGCCGCTG........................................................... 203.000.003.00----------------------------------------------------
........................................................................................................................................................................................CCCCGCCACCCCCCGCCGGG............................................................ 203.000.003.00----------------------------------------------------
........................................................................................................................................................................................CCCCGCCACCCCCCGCGGG............................................................. 192.000.00--------1.00-----------------1.00--------------------------
....................................................................................................................................CCTGGACCACCCTGCAGGTC................................................................................................................ 201.000.00----------------1.00------------------------------------
.......CGTCGGCGGAGGGAAGCCA.............................................................................................................................................................................................................................................. 191.000.00----------------------1.00------------------------------
.........................................................................................................................................................................................CCCGCCACCCCCCGCCGCGT........................................................... 201.000.001.00----------------------------------------------------
.........................................................................................................................................................................................CCCGCCACCCCCCGCCGCGG........................................................... 201.000.00---------------------------1.00-------------------------
..........................................................................................................................................................................................CCGCCACCCCCCGCCGCCGGC......................................................... 211.000.00-----------------------1.00-----------------------------
........................................................................................................................................................................................CCCCGCCACCCCCCGCCGCG............................................................ 201.000.001.00----------------------------------------------------
.........................................................................................................................................................................................CCCGCCACCCCCCGCCGCCGG.......................................................... 211.000.001.00----------------------------------------------------
......................................................................................................................................................................................CACCCCGCCACCCCCCGCCGG............................................................. 211.000.001.00----------------------------------------------------
.............................................................................................................................................................TTCTCAGGCTCAGTCACG......................................................................................... 181.000.00-----------------------------1.00-----------------------
.........................................................................................................................................................................................CCCGCCACCCCCCGCCGATA........................................................... 201.000.001.00----------------------------------------------------
.........................................................................................................................................................................................CCCGCCACCCCCCGCCTGT............................................................ 191.000.00------1.00----------------------------------------------
........................................................................................................................................................................................CCCCGCCACCCCCCGCATG............................................................. 191.000.00-------------------------1.00---------------------------
...................................................................................................................................................................................................................CAGGGAACTCTGGCGTATT.................................. 191.000.00------1.00----------------------------------------------
.......................................................................................................................................................................CAGTCGCCACCACCTTTTA.............................................................................. 191.000.00--------------1.00--------------------------------------
......................................................................................................................................................................................GGCGGGGGGTGGCGGGGTG............................................................... 1940.500.50-----------------------------------0.250.25----------------
.......................................................................................................................................................................................CGGCGGGGGGTGGCGGGGT.............................................................. 1930.330.33---0.33-------------------------------------------------
........................................................................................................................................................................................CGGCGGGGGGTGGCGGGG.............................................................. 1850.200.20---0.20-------------------------------------------------
...........CCTGCTTCCCTCCGCC............................................................................................................................................................................................................................................. 1650.200.20---------------------------------------------0.20-------
.........................................................................................................................................................................................CGGCGGGGGGTGGCGGG.............................................................. 1760.170.17---------------------------------------------------0.17-