| (1) B-CELL | (1) BRAIN | (2) BREAST | (9) CELL-LINE | (2) CERVIX | (1) HELA | (2) LIVER | (1) OTHER | (1) RRP40.ip | (1) SKIN |
| TAAATGCCCAACTTATGGCCCAGAGCTACTGAATCAGAATTTCTGGGGGCAGAACCCAGATATCTTTTTTTTTTTTAACAGCTCTGAAAGCATTTCTGACTCACGGAAGCCAGAGGCTGAGAACCACTCACTTATTGGACAAATATGTTTTCTCTTTATTAATTCATATTTTTTTTTTTTCTTCTTGATTTTCTTACCAGGCTCGTCAATGCTGTGATGAAGGGGAATGTCTTCTAGCTAATCAGGAAAT ..................................................((((.((((...................((((((((...((..(((((.....)))))))))))).))).((.....)).....))))..(((((((..((.........))..))))))).......)))).................................................................... ..................................................51...................................................................................................................................184................................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR029124(GSM416753) HeLa. (hela) | SRR037935(GSM510473) 293cand3. (cell line) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR330895(SRX091733) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR189784 | TAX577588(Rovira) total RNA. (breast) | SRR039620(GSM531983) HBV(+) Adjacent Tissue Sample 2. (liver) | GSM532875(GSM532875) G547N. (cervix) | GSM532874(GSM532874) G699T. (cervix) | SRR191549(GSM715659) 105genomic small RNA (size selected RNA from . (breast) | GSM450602(GSM450602) miRNA sequencing raw reads from post-mortem s. (brain) | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................................................ATATCTTTTTTTTTTTTACTTG......................................................................................................................................................................... | 22 | 4.00 | 0.00 | - | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................GCAGAACCCAGATATCTGT....................................................................................................................................................................................... | 19 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................ATATCTTTTTTTTTTTTCCG........................................................................................................................................................................... | 20 | 2.00 | 0.00 | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................ATATCTTTTTTTTTTTTAACTTGG....................................................................................................................................................................... | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................TATCTTTTTTTTTTTTAACAG......................................................................................................................................................................... | 21 | 2 | 1.00 | 1.00 | - | 0.50 | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................ATTTTTTTTTTTTCTTCTTTAT............................................................. | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TATTTTTTTTTTTTCTTCTTCG.............................................................. | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................TTCATATTTTTTTTTTTTCTTTTTG............................................................... | 25 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................CATATTTTTTTTTTTATTT................................................................... | 19 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................ATTCATATTTTTTTTTTTTTG.................................................................... | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................ATTTTTTTTTTTTCTTCTTTGTA............................................................ | 23 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................TTTTTTTTTTTTCTTCTTGAGGC........................................................... | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................TTTTTTTTCTTCTTGATTTTTAA....................................................... | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................AATTCATATTTTTTTTTTTTCTTTTTG............................................................... | 27 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................TCATATTTTTTTTTTTACTG................................................................... | 20 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................AGCCAGAGGCTGAGAGAG............................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| ..................................................................TTTTTTTTTTAACAGCGAAT.................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................ATTTTTTTTTTTTCTTCGGAG.............................................................. | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................ATTTTTTTTTTTTCTTCTTGTAGA........................................................... | 24 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................TCATATTTTTTTTTTTCTGG................................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................TTTTTTTTTTTTCTTCTTGAGCAG.......................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................ATTTTTTTTTTTTCTTCTTTTTT............................................................ | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................TTTTTTTTTTCTTCTTGACG............................................................ | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................ATTTTTTTTTTTTCTTCTTGGAG............................................................ | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................TTTTTTTTTTTTCTTCTTGAGG............................................................ | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................TCATATTTTTTTTTTTCGGC................................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................TTTTTTTTTTTTCTTCTTGATCAGC......................................................... | 25 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................ATCTTTTTTTTTTTTAACGTCC....................................................................................................................................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................TCATATTTTTTTTTTTTCTTCTAGC.............................................................. | 25 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTTTTTTCTTCTTGTAGG........................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................TCATATTTTTTTTTTTTCTTTAT................................................................ | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................ATCTTTTTTTTTTTTAACAAGG....................................................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................ATTTTTTTTTTTTCTTCTTCTG............................................................. | 22 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................TTTTTTTCTTCTTGATTTTCTTTTAA................................................... | 26 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................ATTTTTTTTTTTTCTTCTGTTC............................................................. | 22 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................ATTTTTTTTTTTTCTTCCCGT.............................................................. | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................TAATTCATATTTTTTTTAG........................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ...............................................................................................................AGAGGCTGAGAACCAGGAC........................................................................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| .....................................................................................................................................................................ATATTTTTTTTTTTTCTTAG................................................................. | 20 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................ATATCTTTTTTTTTTTTCTCT.......................................................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................CATATTTTTTTTTTTTCTCTTG................................................................ | 22 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TATTTTTTTTTTTTCTTCTTTGAG............................................................ | 24 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTTTTTTCTTCTTGATTATTT........................................................ | 23 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................TCATATTTTTTTTTTTTCTTTAAG............................................................... | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................ATATCTTTTTTTTTTTTAACTTTG....................................................................................................................................................................... | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................ATATCTTTTTTTTTTTTATC........................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TATTTTTTTTTTTTCTTCTTTTTA............................................................ | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................TTTTTTTTTTTCTTCTTGAGGA........................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................AGATATCTTTTTTTTTTCTTC............................................................................................................................................................................ | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................TCATATTTTTTTTTTTTCTTCAG................................................................ | 23 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................ATGCTGTGATGAAGGGGAATG..................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .......................................................................................................................................................................ATTTTTTTTTTTTCTTCTGTAG............................................................. | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................ATATCTTTTTTTTTTTTCCCG.......................................................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................ATTTTTTTTTTTTCTTCTGC............................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................ATATTTTTTTTTTTTCTTCTTT............................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................ATTTTTTTTTTTTCTTCTTTAG............................................................. | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................ATATTTTTTTTTTTTCTTCAAG............................................................... | 22 | 4 | 0.50 | 0.25 | - | - | 0.25 | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................AACAGCTCTGAAAGCATT............................................................................................................................................................ | 18 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 |
| .....................................................................................................................................................................ATATTTTTTTTTTTTCTTC.................................................................. | 19 | 4 | 0.25 | 0.25 | - | - | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................ATCTTTTTTTTTTTTAACAGTAG...................................................................................................................................................................... | 23 | 5 | 0.20 | 0.20 | - | - | - | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................ATCTTTTTTTTTTTTAACAG......................................................................................................................................................................... | 20 | 5 | 0.20 | 0.20 | - | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................CATATTTTTTTTTTTTCTT................................................................... | 19 | 9 | 0.11 | 0.11 | - | - | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................CATATTTTTTTTTTTTCTTG.................................................................. | 20 | 9 | 0.11 | 0.11 | - | - | - | - | - | - | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................CATATTTTTTTTTTTTCTTTATG............................................................... | 23 | 9 | 0.11 | 0.11 | - | - | - | - | - | - | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TAAATGCCCAACTTATGGCCCAGAGCTACTGAATCAGAATTTCTGGGGGCAGAACCCAGATATCTTTTTTTTTTTTAACAGCTCTGAAAGCATTTCTGACTCACGGAAGCCAGAGGCTGAGAACCACTCACTTATTGGACAAATATGTTTTCTCTTTATTAATTCATATTTTTTTTTTTTCTTCTTGATTTTCTTACCAGGCTCGTCAATGCTGTGATGAAGGGGAATGTCTTCTAGCTAATCAGGAAAT ..................................................((((.((((...................((((((((...((..(((((.....)))))))))))).))).((.....)).....))))..(((((((..((.........))..))))))).......)))).................................................................... ..................................................51...................................................................................................................................184................................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR029124(GSM416753) HeLa. (hela) | SRR037935(GSM510473) 293cand3. (cell line) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR330895(SRX091733) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR189784 | TAX577588(Rovira) total RNA. (breast) | SRR039620(GSM531983) HBV(+) Adjacent Tissue Sample 2. (liver) | GSM532875(GSM532875) G547N. (cervix) | GSM532874(GSM532874) G699T. (cervix) | SRR191549(GSM715659) 105genomic small RNA (size selected RNA from . (breast) | GSM450602(GSM450602) miRNA sequencing raw reads from post-mortem s. (brain) | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................CTACTGAATCAGAATTTCTGA............................................................................................................................................................................................................ | 21 | 3.00 | 0.00 | - | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................TTTTTTTTTTTCTTCTTGATTT........................................................... | 22 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................TTTTTTTTTTTTCTTCTTGAATT........................................................... | 23 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTTTTTTCTTCTTGAGGGG.......................................................... | 21 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................TTTTCTTACCAGGCTCAG............................................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| .......................................................................................................................................................................ATTTTTTTTTTTTCTTCTTCTA............................................................. | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| .....................................................................................................................................................................ATATTTTTTTTTTTTCTTCCC................................................................ | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |