| (2) B-CELL | (10) CELL-LINE | (1) LIVER | (2) OTHER | (1) SKIN | (1) UTERUS | (1) XRN.ip |
| TTTAATATAGATTTATTTTTTGTGTGAACAAAATATAGTAGGCGTATGTATCTATACATTGAAAAGTATGGAAGAAAATAACCCAAAATGTTATCAGTTGTCTTAACAGATTTTATGATGGTGTTATTCTTCTTGATGTACACAAGATTATTTTTGAACTATATGGCAAACATCATTCTTTTTTAATTTTTTTTTTTTAGAGACTAAGGTGTCAGTATGTTCTTCAAGCTGCTCTGCTCCTGGGCCCAAG ...........................................................................................................(((....((((((.((((((...(((((.......)))))...............))))))..)))))))))....................................................................... ........................................................................................................105....................................................................................192........................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189782 | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037936(GSM510474) 293cand1. (cell line) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR189784 | SRR094129(GSM651905) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR330883(SRX091721) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ......................................................................................................................................................................CAAACATCATTCTTTTTTAATTTTTTTTTTTAG................................................... | 33 | 64.00 | 0.00 | 29.00 | 22.00 | 4.00 | 9.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................CAAACATCATTCTTTTTTAATTTTTTTTTTTTAG.................................................. | 34 | 1 | 49.00 | 49.00 | 23.00 | 17.00 | 6.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................CAAACATCATTCTTTTTTAATTTTTTTTTTAG.................................................... | 32 | 39.00 | 0.00 | 18.00 | 12.00 | 5.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................CAAACATCATTCTTTTTTTTAG.............................................................. | 22 | 9.00 | 0.00 | 5.00 | 1.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................CAAACATCATTCTTTTTTAATTTTTTTTTTTTAT.................................................. | 34 | 7.00 | 0.00 | 3.00 | - | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................CAAACATCATTCTTTTTTAATTTTTTTTTAG..................................................... | 31 | 7.00 | 0.00 | 5.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................CAAACATCATTCTTTTTTTAG............................................................... | 21 | 6.00 | 0.00 | 1.00 | 1.00 | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................CAAACATCATTCTTTTTTAATTTTTTTTTTTTTAG................................................. | 35 | 6.00 | 0.00 | 5.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................TATGTTCTTCAAGCTGCTCTG.............. | 21 | 1 | 5.00 | 5.00 | - | - | - | - | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................CATCATTCTTTTTTAATTTTTTTTTTTAG................................................... | 29 | 4.00 | 0.00 | - | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................CAAACATCATTCTTTTTTAATTTTTTTTTTTAT................................................... | 33 | 4.00 | 0.00 | 3.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................CAAACATCATTCTTTTTTAATTTTTTTTTTCTAG.................................................. | 34 | 3.00 | 0.00 | - | - | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................CAAACATCATTCTTTTTAG................................................................. | 19 | 3.00 | 0.00 | - | - | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................CAAACATCATTCTTTTTTAATTTTTTTTTTTA.................................................... | 32 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................CAAACATCATTCTTTTTTAATTTTTTTTTTCAG................................................... | 33 | 2.00 | 0.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................CAAACATCATTCTTTTTTAG................................................................ | 20 | 2.00 | 0.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................TCATTCTTTTTTAATTTTTTTTTCT..................................................... | 25 | 2.00 | 0.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................ATCATTCTTTTTTAATTTTTTTTTTTTTAT................................................. | 30 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................CGTATGTATCTATACATTGA............................................................................................................................................................................................ | 20 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................CAAACATCATTCTTTTTTAATTTTTTTTTTTAAG.................................................. | 34 | 2.00 | 0.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................CAAACATCATTCTTTTTTAATTTTTTTTTTTCAG.................................................. | 34 | 2.00 | 0.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................TCATTCTTTTTTAATTTTCCG......................................................... | 21 | 2.00 | 0.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................CATTCTTTTTTAATTTTTTTTTTTTAG.................................................. | 27 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................AACTATATGGCAAACATCATTCTTTTTTTAG............................................................... | 31 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................CAAACATCATTCTTTTTTTTTG.............................................................. | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................TCTTTTTTAATTTTTTTTTCAC.................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................ACATCATTCTTTTTTAATTTTTTTTTTAG.................................................... | 29 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................TCTTTTTTAATTTTTTTTTTATC................................................... | 23 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................GATTATTTTTGAACTCTG....................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | |
| ...........................................................................................................................................................................ATCATTCTTTTTTAATTTTTTTTTTT..................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................CAAACATCATTCTTTTTTAATTTTTTTTCTAG.................................................... | 32 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................ACATCATTCTTTTTTAATTTTTTTTTTTAGAG................................................. | 32 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................CAAACATCATTCTTTTTTAA................................................................ | 20 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................CATCATTCTTTTTTAATTTTTTTTTTTTTAT................................................. | 31 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................ATCATTCTTTTTTAATTTTTTTTTT...................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................ATTCTTTTTTAATTTTTTTTTTTCTT.................................................. | 26 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................CAAACATCATTCTTTTTTCTAA.............................................................. | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TTTTTTAATTTTTTTTTTTTAACAG............................................... | 25 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .............TATTTTTTGTGTGAACTCTG......................................................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ..........................................................................................................................................................................CATCATTCTTTTTTAATTTTTTTTTTTG.................................................... | 28 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................TTTAATTTTTTTTTTTTCACC................................................ | 21 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................ATTTTATGATGGTGTTGG........................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| ..............................................................AAAGTATGGAAGAAAATAATAAA..................................................................................................................................................................... | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| .................................................................................................................................................................................CTTTTTTAATTTTTTTTTTTATAT................................................. | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................CATTCTTTTTTAATTTTTTTTTTTCAG.................................................. | 27 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................CAAACATCATTCTTTTTTAATTTTTTTTTTG..................................................... | 31 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................TTCTTTTTTAATTTTTTTTTATTG................................................... | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................AACTATATGGCAAACATCA........................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................AAACATCATTCTTTTTTAATTTTTTTTTTCTAG.................................................. | 33 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................TTTTTTTTTTTAGAGACTAAGGTGTCAG................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................TCATTCTTTTTTAATTTTTTTTTTCTAG.................................................. | 28 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................ACATCATTCTTTTTTAATTTTTTTTTTTAG................................................... | 30 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................TTTTTAATTTTTTTTTTTTAAAAG............................................... | 24 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................TCTTTTTTAATTTTTTTATCT..................................................... | 21 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................CAAACATCATTCTTTTTTAATTTTTTTTAG...................................................... | 30 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................TGCTCCTGGGCCCAAGCGA | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ....ATATAGATTTATTTTAATT................................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................CATCATTCTTTTTTAATTTTTTTTTTTTAT.................................................. | 30 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................TTCTTTTTTAATTTTTTTTTTTTCTTG................................................ | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................CATTCTTTTTTAATTTTTTTTAAG..................................................... | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AACATCATTCTTTTTTAATTTTTTTTTTAG.................................................... | 30 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AAACATCATTCTTTTTTAATTTTTTTTTTTTAG.................................................. | 33 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................AACATCATTCTTTTTTAATTTTTTTTTTTAG................................................... | 31 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......ATAGATTTATTTTTTGTGTG................................................................................................................................................................................................................................ | 20 | 2 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .............................................................................................................................................................................CATTCTTTTTTAATTTATTG......................................................... | 20 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................CAAACATCATTCTTTTTTAATTTTTTTTTTAAG................................................... | 33 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................CATTCTTTTTTAATTTTCCG......................................................... | 20 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AAACATCATTCTTTTTTAATTTTTTTTTAT..................................................... | 30 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CTTTTTTAATTTTTTTTTTTAAAG................................................. | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TTTAATATAGATTTATTTTTTGTGTGAACAAAATATAGTAGGCGTATGTATCTATACATTGAAAAGTATGGAAGAAAATAACCCAAAATGTTATCAGTTGTCTTAACAGATTTTATGATGGTGTTATTCTTCTTGATGTACACAAGATTATTTTTGAACTATATGGCAAACATCATTCTTTTTTAATTTTTTTTTTTTAGAGACTAAGGTGTCAGTATGTTCTTCAAGCTGCTCTGCTCCTGGGCCCAAG ...........................................................................................................(((....((((((.((((((...(((((.......)))))...............))))))..)))))))))....................................................................... ........................................................................................................105....................................................................................192........................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189782 | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037936(GSM510474) 293cand1. (cell line) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR189784 | SRR094129(GSM651905) small RNA(18-35nt)small RNA deep sequencing o. (uterus) | SRR330883(SRX091721) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................................................................................................................................................GCTGCTCTGCTCCTGGTT..... | 18 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................................................TTCTTCAAGCTGCTCATAG............ | 19 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................................TTTAGAGACTAAGGTTTGG.................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| .........................................................................................................................................................................................................................TGTTCTTCAAGCTGCTCCCTG............ | 21 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................................................................TTCAAGCTGCTCTGCTCAG......... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| .........................................................ATTGAAAAGTATGGAAGAA.............................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................TTTTGAACTATATGGGTT................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |