ID: uc004ewf.2_intron_19_0_chrX_130433745_r.3p
GENE: IGSF1(7)
chrX:130433695-130433944-


(1)
AGO2.ip
(1)
B-CELL
(2)
BREAST
(6)
CELL-LINE
(1)
HELA
(1)
LIVER
(1)
OTHER
(3)
SKIN
(1)
TESTES
(1)
UTERUS

Sense strand
ATGAAATGTAACTCATCATATGAACTATAAACTATTCACTTACACACACTGTATAGATATACATTTTCTTTCTGCTGCTTTGCTTTACCTATTCAAACCAGTGTATTTTTTCTCATTTTAACATAAATTTCTAAATATTTAAATGTGTCTTTTTGTTGTTTGTTGTTTGTTTTTGTTTTGTTTTTCTGTTTTTGAGACAGAGCCTCTCTCTGTCACCCAGGCTGGAATGCACTGGTGCCATCTCCACTCA
.........................................................................((((.((((...........)))).))))........(((((....((((.(((.....(((((..((((((..................))))))....)))))....))).))))..))))).....................................................
...........................................................60..........................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR343335SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR189785SRR029128(GSM416757)
H520. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...........................................................................................................................................................................TTTGTTTTGTTTTTCTGTTTAGA........................................................237.000.00-7.00--------------------
.........................................................................................................................................................TGTTGTTTGTTGTTTGTTTTTCTGC........................................................................254.000.00-4.00--------------------
.......................................................................................................................................................TTTGTTGTTTGTTGTTTGTTTTTCTGC........................................................................274.000.002.002.00--------------------
.................ATATGAACTATAAACTACTGT....................................................................................................................................................................................................................213.000.00---2.001.00-----------------
........................................................................................................................................................TTGTTGTTTGTTGTTTGTTTTTTCGC........................................................................262.000.001.001.00--------------------
...............................................................................................................................................................TTGTTGTTTGTTTTTGTTCTCT.....................................................................222.000.002.00---------------------
..........................................................................................................................................................................TTTTGTTTTGTTTTTCTGTTTTTTCA......................................................262.000.00-2.00--------------------
....................................................................................................................................................................GTTTGTTTTTGTTTTGTTTTTTTCC.............................................................252.000.002.00---------------------
..............................................................................................................................................................................................................TCTCTGTCACCCAGGCTGGCCTC.....................232.000.00-2.00--------------------
................................................................................................................................................................TGTTGTTTGTTTTTGTTTTGTTCTC.................................................................252.000.00-2.00--------------------
...................................TCACTTACACACACTATG.....................................................................................................................................................................................................182.000.00-----1.00-1.00--------------
..............................................................................................................................................................TTTGTTGTTTGTTTTTGTTTTGTTCTC.................................................................272.000.002.00---------------------
........................................................................................................................................................TTGTTGTTTGTTGTTTGTTTTTCTGC........................................................................262.000.002.00---------------------
................................................................................................................................................................TGTTGTTTGTTTTTGTTTTGTTTTCTC...............................................................272.000.001.001.00--------------------
....................................................................................................................................................CTTTTTGTTGTTTGTTACC...................................................................................191.000.00----------------1.00-----
..........................................................................................................................................................................TTTTGTTTTGTTTTTCTGTTTGGGT.......................................................251.000.001.00---------------------
...............................................................................................................................................................................TTTTGTTTTTCTGTTTTTGAGACGG..................................................251.000.001.00---------------------
.......................................................................................................................................................TTTGTTGTTTGTTGTTTGTTTTTTGA.........................................................................261.000.00--------------------1.00-
...............................................................................................................................................................................................TTGAGACAGAGCCTCCG..........................................171.000.00--------1.00-------------
...............................................................................................................................................................TTGTTGTTTGTTTTTGTTTTGTTTCC.................................................................261.000.001.00---------------------
............................................................................................................................................................................................................TCTCTCTGTCACCCAGGCTGGTAA......................241.000.00-------------------1.00--
..........................................................................................................................................................................TTTTGTTTTGTTTTTCTGTTAGAG........................................................241.000.001.00---------------------
..........................................................................................................................................................................TTTTGTTTTGTTTTTCTGTTTGCCT.......................................................251.000.001.00---------------------
........................................................................................................................................................................................................AGCCTCTCTCTGTCACCCAGGCTGGATG......................281.000.00------1.00---------------
..................................................................................................................................................................TTGTTTGTTTTTGTTTTGTTCCT.................................................................231.000.00-1.00--------------------
..................................................................................................................................................................TTGTTTGTTTTTGTTTTGTTTCCC................................................................241.000.001.00---------------------
.........................................................................................................................................................................TTTTTGTTTTGTTTTTCTGTTTCG.........................................................241.000.00------1.00---------------
................................................................TTTCTTTCTGCTGCTTATAG......................................................................................................................................................................201.000.00--1.00-------------------
.........................................................................................................................................................TGTTGTTTGTTGTTTGTTTTTGCA.........................................................................241.000.001.00---------------------
...........................................................................................................................................................TTGTTTGTTGTTTGTTTTCGAG.........................................................................221.000.001.00---------------------
.........................................................................................................................................................................TTTTTGTTTTGTTTTTCTGTTTGTG........................................................251.000.00-1.00--------------------
.......................................................................................................................................................................TGTTTTTGTTTTGTTTTTCTGC.............................................................221.000.00-1.00--------------------
.........................................................................................................................................................................................CTGTTTTTGAGACAGAGCCTTGC..........................................231.000.00-1.00--------------------
.................................ATTCACTTACACACATAG.......................................................................................................................................................................................................181.000.00-----1.00----------------
.........................................................................................................................................................................TTTTTGTTTTGTTTTTCTGCG............................................................211.000.001.00---------------------
..........................................................................................................................................................................TTTTGTTTTGTTTTTCTGTTTTTTTA......................................................261.000.001.00---------------------
.......................................................................................................................................................TTTGTTGTTTGTTGTTTGTTTCCTC..........................................................................251.000.001.00---------------------
........................................................................................................................................................TTGTTGTTTGTTGTTTGTTTTTGTTTCCTC....................................................................301.000.001.00---------------------
..........................................................................................................................................................GTTGTTTGTTGTTTGTTTTTCTGC........................................................................241.000.001.00---------------------
................................................................................................................................................................TGTTGTTTGTTTTTGTTTTGTTTCAC................................................................261.000.001.00---------------------
...............................................................................................................................................................TTGTTGTTTGTTTTTGTTTTGTTTTGCTT..............................................................291.000.001.00---------------------
.........................................................................................................................................................TGTTGTTTGTTGTTTGTTTTTCGCC........................................................................251.000.001.00---------------------
...........................................................................................................................................................................TTTGTTTTGTTTTTCTGTTTGTGG.......................................................241.000.001.00---------------------
........................................................................................................................................................TTGTTGTTTGTTGTTTGTTTTTGTTTCC......................................................................281.000.001.00---------------------
............................................................................................................................................................................TTGTTTTGTTTTTCTGTTTTTGTATT....................................................261.000.001.00---------------------
...................................................................................................................................................................TGTTTGTTTTTGTTTTGTTTTTTTCT.............................................................261.000.00-1.00--------------------
.........................................................................................................................................................TGTTGTTTGTTGTTTGTTTTTCCGC........................................................................251.000.00-1.00--------------------
...................ATGAACTATAAACTACTGT....................................................................................................................................................................................................................191.000.00---------------1.00------
...........................................................................................................................................................TTGTTTGTTGTTTGTTTTTCTGC........................................................................231.000.00-1.00--------------------
...................................................................................................................................................TCTTTTTGTTGTTTGTTGTTTTGTT..............................................................................251.000.00-1.00--------------------
...............................................................TTTTCTTTCTGCTGCTTAG........................................................................................................................................................................191.000.00------------1.00---------
..................TATGAACTATAAACTACTGT....................................................................................................................................................................................................................201.000.00-------------1.00--------
..........................................................................................................................................................................................TGTTTTTGAGACAGAGCCTCTCTCTG......................................2620.500.500.50---------------------
...........................................................................................................................................................TTGTTTGTTGTTTGTTTTTGTTTTGT.....................................................................2620.500.500.50---------------------
..................................................................................................................................................................................................................................ATGCACTGGTGCCATCT.......1790.110.11---------------------0.11

Antisense strand
ATGAAATGTAACTCATCATATGAACTATAAACTATTCACTTACACACACTGTATAGATATACATTTTCTTTCTGCTGCTTTGCTTTACCTATTCAAACCAGTGTATTTTTTCTCATTTTAACATAAATTTCTAAATATTTAAATGTGTCTTTTTGTTGTTTGTTGTTTGTTTTTGTTTTGTTTTTCTGTTTTTGAGACAGAGCCTCTCTCTGTCACCCAGGCTGGAATGCACTGGTGCCATCTCCACTCA
.........................................................................((((.((((...........)))).))))........(((((....((((.(((.....(((((..((((((..................))))))....)))))....))).))))..))))).....................................................
...........................................................60..........................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR343335SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR189785SRR029128(GSM416757)
H520. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................CTTTCTGCTGCTTTGGGC..................................................................................................................................................................... 181.000.00---------1.00------------
.............................................................................................................................AATTTCTAAATATTTGATA.......................................................................................................... 191.000.00----1.00-----------------
....................................................................................................................TTTAACATAAATTTCTTAA................................................................................................................... 191.000.00-----------1.00----------
.......................................................................................................................................................................................................GAGCCTCTCTCTGTCACCCACGAC........................... 241.000.001.00---------------------
..............................................................ATTTTCTTTCTGCTGATTG......................................................................................................................................................................... 191.000.00--1.00-------------------
....................................................................................................................................................................................................................TCACCCAGGCTGGAATGAAG.................. 201.000.00-----------------1.00----
............................................................................TACACTGGTTTGAATAGGTAAAGCAAAGC................................................................................................................................................. 2911.001.00------------------1.00---
.................................................................................................................................................................................................................CTGTCACCCAGGCTGGAATGCACTAG............... 261.000.00-1.00--------------------
....................................................................................................GTGTATTTTTTCTCAAC..................................................................................................................................... 171.000.00----------1.00-----------
....................................................................................................................TTTAACATAAATTTCTTACA.................................................................................................................. 201.000.00--------------1.00-------