ID: uc004erz.1_intron_9_0_chrX_118985837_r.3p
GENE: (1)
chrX:118985787-118986036-


(1)
AGO2.ip
(5)
B-CELL
(2)
BRAIN
(5)
BREAST
(18)
CELL-LINE
(3)
FIBROBLAST
(4)
HEART
(1)
LIVER
(2)
OTHER
(39)
SKIN
(1)
XRN.ip

Sense strand
ATTTCCAAGGGTTTTTTTAAACCGCGTTACTATTATGTTTGACTAATTCTGAGCATTGGGCTGCAGAAGAATATTTTCTCCTGGGTTTTTACAAGTGATCTCATATTTTAAAGCCCAGCCTTCTTCAGGAACTGTGATTCTTTCAGGTATGACAGAAAACTGATTTGTACTAATTTTATTTTCCTTATGCATTTCTTAAGGTGGTAATTCGAAGATTACCTCCCACTTTGACCAAGGAGCAGCTTCAGGA
....................................................((((.((((((.(((((...........(((((((((.....(((....))).....))))))))).))))).)))...((((.((.((....)).)).))))...........................))).))))............................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR189782SRR189785TAX577741(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577579(Rovira)
total RNA. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR038863(GSM458546)
MM603. (cell line)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577742(Rovira)
total RNA. (breast)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
........................................................TGGGCTGCAGAAGAATA.................................................................................................................................................................................17286.5086.5018.50-7.003.503.502.501.502.502.002.00-1.002.001.001.002.002.001.501.501.501.001.001.001.00-1.001.00-1.00----1.00---1.001.00-1.001.001.00-1.001.00--1.00-1.001.001.00-0.500.500.50-0.500.500.500.500.500.500.500.500.500.500.500.500.500.500.500.500.500.500.50----
........................................................TGGGCTGCAGAAGAATAATC..............................................................................................................................................................................2029.0086.50-9.00-------------------------------------------------------------------------------
........................................................TGGGCTGCAGAAGAATAA................................................................................................................................................................................1823.0086.50--------------------------------1.00-1.00------------1.00---------------------------------
........................................................TGGGCTGCAGAAGAAT..................................................................................................................................................................................1651.001.00---0.20-----------------0.20--------------------------------0.20------------------------0.200.20
....CCAAGGGTTTTTTTAACCC...................................................................................................................................................................................................................................191.000.00-----------------------------------------------------1.00---------------------------
..................................................................................................................................................................................................................................TTTGACCAAGGAGCAGCTTC....2011.001.00------------------------------1.00--------------------------------------------------
......................................................................ATATTTTCTCCTGGGTTTTTACAAGTG.........................................................................................................................................................2711.001.00-----------1.00---------------------------------------------------------------------
...................................................................................................................................................................................TTTCCTTATGCATTTCTTAAGTT................................................231.000.00-------------------------------------------1.00-------------------------------------
.......................................................TTGGGCTGCAGAAGAATATTTTCTCCT........................................................................................................................................................................2711.001.00--------------1.00------------------------------------------------------------------
......................................................................................................................................................................................................................................ACCAAGGAGCAGCTTCAGGAACCT241.000.00----------1.00----------------------------------------------------------------------
............................................AATTCTGAGCATTGGGCTGCAG........................................................................................................................................................................................2211.001.00----------1.00----------------------------------------------------------------------
....................................................................................................................................................................................................................................TGACCAAGGAGCAGCCGG....181.000.00---------------------------------------1.00-----------------------------------------
...................................................................................................................................................................................TTTCCTTATGCATTTCTTAAGA.................................................221.000.00-------------------------------------------------1.00-------------------------------
....................................................................................................................................................................................................................................TGACCAAGGAGCAGCTGA....181.000.00-----------------------------1.00---------------------------------------------------
.................................................................................................................................................................................................................CGAAGATTACCTCCCACTT......................1911.001.00------------------------1.00--------------------------------------------------------
.................................................TGAGCATTGGGCTGCAGAAGAATAT................................................................................................................................................................................2511.001.00-------------------------------1.00-------------------------------------------------
....................................................................................................................................................................................................................................TGACCAAGGAGCAGCTA.....171.000.00------1.00--------------------------------------------------------------------------
...................................................................................GGTTTTTACAAGTGATCTCA...................................................................................................................................................2011.001.00-------------1.00-------------------------------------------------------------------
........................................................TGGGCTGCAGAAGAATAAA...............................................................................................................................................................................1921.0086.50---------------------------1.00-----------------------------------------------------
.........................................................GGGCTGCAGAAGAATA.................................................................................................................................................................................1620.500.50---------------------------------------------------------0.50-----------------------
................................................................................................................................................................................TATTTTCCTTATGCATT.........................................................1750.400.40-----------------------------------------------------------------------------0.40---
...........................................................................................................................................................................AATTTTATTTTCCTTATG.............................................................1850.200.20------------------------------------------------------------------------------0.20--
........................................................TGGGCTGCAGAAGAATC.................................................................................................................................................................................1750.201.00--------------------0.20------------------------------------------------------------

Antisense strand
ATTTCCAAGGGTTTTTTTAAACCGCGTTACTATTATGTTTGACTAATTCTGAGCATTGGGCTGCAGAAGAATATTTTCTCCTGGGTTTTTACAAGTGATCTCATATTTTAAAGCCCAGCCTTCTTCAGGAACTGTGATTCTTTCAGGTATGACAGAAAACTGATTTGTACTAATTTTATTTTCCTTATGCATTTCTTAAGGTGGTAATTCGAAGATTACCTCCCACTTTGACCAAGGAGCAGCTTCAGGA
....................................................((((.((((((.(((((...........(((((((((.....(((....))).....))))))))).))))).)))...((((.((.((....)).)).))))...........................))).))))............................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR189782SRR189785TAX577741(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577579(Rovira)
total RNA. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR038863(GSM458546)
MM603. (cell line)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577742(Rovira)
total RNA. (breast)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
...............TTTAAACCGCGTTACCGA......................................................................................................................................................................................................................... 182.000.00-----------------------------------1.001.00--------------------------------------------
......................................................................................................................................................................................................................................ACCAAGGAGCAGCTTCATA. 191.000.00----------------------------------------------1.00----------------------------------
.....................................................................................................................GTTCCTGAAGAAGGC...................................................................................................................... 1570.140.14-------------------------------------------------------0.14-------------------------