ID: uc004eqc.1_intron_0_0_chrX_114754020_r.3p
GENE: AK127380(2)
chrX:114753970-114754219-


(1)
AGO1.ip 		(2)
AGO2.ip 		(1)
AGO3.ip 		(4)
BREAST 		(17)
CELL-LINE 		(1)
CERVIX 		(3)
HELA 		(2)
OTHER 		(1)
RRP40.ip 		(5)
SKIN 		(1)
UTERUS

Sense strand
ATATATATATATATATATATATATATATTTGGAGATTAGGTCTCACTCTGTCGCCCAGGCTGCAGTGCAGTGGCACAATCATGACTCATTGCAGCTTCAACTTCCCGGGTTCAGGTGATTTTCCCACCACAGCCTCCGGGGTAGCTGGGATGACAGGCATGCACCACAATGACCGAGTAATTTTTTATATTCTTTTGTAGAGATGGGGTTTCGTCATGTTGCCCAGGCTGATGTAGAACTCCTGGCCTCA
....................................................(((((((((((((((..((((.....))))....))))))))))).........))))............................................................................................................................................
..................................................51...........................................................112........................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR029128(GSM416757)
H520. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		TAX577739(Rovira)
total RNA. (breast)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		TAX577579(Rovira)
total RNA. (breast)		SRR029130(GSM416759)
DLD2. (cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................................TGCAGCTTCAACTTCGTCT..............................................................................................................................................1935.000.0023.00---5.004.003.00---------------------------
.................TATATATATATTTGGACGTG.....................................................................................................................................................................................................................202.000.00---2.00------------------------------
.....................................AGGTCTCACTCTGTCGCCCAGGCCGG...........................................................................................................................................................................................262.000.00--2.00-------------------------------
...........................................................................................................................................................................................TATTCTTTTGTAGAGATGGGGTTC.......................................242.000.00--2.00-------------------------------
................................................TGTCGCCCAGGCTGCAGTGCAGTCGTG...............................................................................................................................................................................272.000.00--2.00-------------------------------
.....................................................................................................................................................................................TTTTTATATTCTTTTGTAGAGATGGGG..........................................2712.002.00--2.00-------------------------------
.........................................................................................TGCAGCTTCAACTTCGCCT..............................................................................................................................................192.000.001.00---1.00-----------------------------
................................................TGTCGCCCAGGCTGCAGTGCAGCGCG................................................................................................................................................................................262.000.00-2.00--------------------------------
........................................................................................................................................................ACAGGCATGCACCACAATGACCGAGTAATCTT..................................................................322.000.00--2.00-------------------------------
.................................................................................................................................................................................................TTTGTAGAGATGGGGTTACGG....................................211.000.00-1.00--------------------------------
..................................................TCGCCCAGGCTGCAGTGCCC....................................................................................................................................................................................201.000.00-1.00--------------------------------
............................................................................................................................................................................................ATTCTTTTGTAGAGATGGGGTTTTGCT...................................271.000.00--1.00-------------------------------
...............................................................................................................................................................................................CTTTTGTAGAGATGGGGC.........................................181.000.00--------1.00-------------------------
...........................................................................................................................................................................................TATTCTTTTGTAGAGATGGCGA.........................................221.000.00--1.00-------------------------------
.....................................AGGTCTCACTCTGTCGCCCACC...............................................................................................................................................................................................221.000.00------------------------1.00---------
.....................................................CCCAGGCTGCAGTGCAGTGGCAGAGC...........................................................................................................................................................................261.000.00-1.00--------------------------------
..................................................................................................................................................................ACCACAATGACCGAGTGA......................................................................181.000.00-------------------1.00--------------
.....................................................CCCAGGCTGCAGTGCAGTGGCACAACCC.........................................................................................................................................................................281.000.00---------------1.00------------------
.................TATATATATATTTGGACG.......................................................................................................................................................................................................................181.000.00---1.00------------------------------
.................................................GTCGCCCAGGCTGCAGTGC......................................................................................................................................................................................1901.001.00--------------1.00-------------------
..............................................TCTGTCGCCCAGGCTGCAGTGCAGGGCG................................................................................................................................................................................281.000.00-1.00--------------------------------
..............................................................................................................................................................................................TCTTTTGTAGAGATGGGGTTTCCCA...................................251.000.00--1.00-------------------------------
..............................................................................................................................................................................................TCTTTTGTAGAGATGGGGTTCCAC....................................241.000.00-1.00--------------------------------
............................................................................................................................................................................................ATTCTTTTGTAGAGATGGGGTTTTACT...................................271.000.00-1.00--------------------------------
..............................................TCTGTCGCCCAGGCTGCAGTGCAGTGATGC..............................................................................................................................................................................301.000.00--1.00-------------------------------
..........................................................................................................................................................................................ATATTCTTTTGTAGAGATGGGGGTC.......................................251.000.00--1.00-------------------------------
.....................................AGGTCTCACTCTGTCGCCCAGGCTGCAGAG.......................................................................................................................................................................................301.000.00--1.00-------------------------------
...................................................................................................................................................................................ATTTTTTATATTCTTTTGAG...................................................201.000.00---------------1.00------------------
......................................................................................................TCCCGGGTTCAGGTGATTTTCT..............................................................................................................................221.000.00--------------------------1.00-------
.............................................CTCTGTCGCCCAGGCTGCAGTGCAGCGGG................................................................................................................................................................................291.000.00-1.00--------------------------------
................................................................................................................................................................................................TTTTGTAGAGATGGGGTTTAG.....................................211.000.00-----------------------1.00----------
.........................................................................................TGCAGCTTCAACTTCGTC...............................................................................................................................................181.000.00----------------------1.00-----------
.................................................................................................................................................................................TAATTTTTTATATTCTCCTG.....................................................201.000.00---1.00------------------------------
..........................................................................................................................................................................................ATATTCTTTTGTAGAGATGGGGTTTTCC....................................281.000.00--1.00-------------------------------
..........................................TCACTCTGTCGCCCAGGCTGCAGTGGCGC...................................................................................................................................................................................291.000.00--1.00-------------------------------
....................................................................................................................................................................................................................................TGATGTAGAACTCCTGGC....1830.330.33-----------------------------0.33----
.....................................................................................................................................................................................................................................GATGTAGAACTCCTGGC....1730.330.33------------------------------0.33---
..................................................................................................................................................................................................................................GCTGATGTAGAACTCCTGG.....1940.250.25-------------------------------0.25--
...........................................................................................................................................................................................TATTCTTTTGTAGAGATGGGGTTTC......................................2560.170.17--0.17-------------------------------
............................................................................................................................................................................................................................GCCCAGGCTGATGTAG..............1670.140.14----------------------------0.14-----
...................................................................................................................................................................................................................................CTGATGTAGAACTCCTG......1770.140.14---------------------------------0.14

Antisense strand
ATATATATATATATATATATATATATATTTGGAGATTAGGTCTCACTCTGTCGCCCAGGCTGCAGTGCAGTGGCACAATCATGACTCATTGCAGCTTCAACTTCCCGGGTTCAGGTGATTTTCCCACCACAGCCTCCGGGGTAGCTGGGATGACAGGCATGCACCACAATGACCGAGTAATTTTTTATATTCTTTTGTAGAGATGGGGTTTCGTCATGTTGCCCAGGCTGATGTAGAACTCCTGGCCTCA
....................................................(((((((((((((((..((((.....))))....))))))))))).........))))............................................................................................................................................
..................................................51...........................................................112........................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR029128(GSM416757)
H520. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		TAX577739(Rovira)
total RNA. (breast)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		TAX577579(Rovira)
total RNA. (breast)		SRR029130(GSM416759)
DLD2. (cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................GGCTGCAGTGCAGTGGCACAATGGGC....................................................................................................................................................................... 264.000.00-4.00--------------------------------
.........................................................GGCTGCAGTGCAGTGGCACAGGGC......................................................................................................................................................................... 243.000.00-3.00--------------------------------
..................................................TCGCCCAGGCTGCAGTGCAGTAT................................................................................................................................................................................. 233.000.00----------1.00---------1.00----1.00--------
.....................................................................................................................................................................................................................................GATGTAGAACTCCTGCGAC.. 192.000.00-------1.00-----1.00--------------------
...............................................CTGTCGCCCAGGCTGCAGTGCAGTGGCACAAG........................................................................................................................................................................... 322.000.00-2.00--------------------------------
................................................CTGCACTGCAGCCTGGGCGACA.................................................................................................................................................................................... 2202.002.00---------2.00------------------------
.....................................................................................................................................................................................................................................GATGTAGAACTCCTGGACG.. 192.000.00-------2.00--------------------------
.........................................................................................TGCAGCTTCAACTTCCTTG.............................................................................................................................................. 192.000.001.00---------1.00-----------------------
.................................................GTCGCCCAGGCTGCAGTGCAGTCCC................................................................................................................................................................................ 251.000.00-1.00--------------------------------
................................................TGCACTGCAGCCTGGGCGACA..................................................................................................................................................................................... 2101.001.00---------1.00------------------------
...................................................GCACTGCAGCCTGGGCG...................................................................................................................................................................................... 1701.001.00-----------1.00----------------------
.............................................GCAGCCTGGGCGACAGAG........................................................................................................................................................................................... 1801.001.00------------1.00---------------------
..................................................TCGCCCAGGCTGCAGTGCAGTGAT................................................................................................................................................................................ 241.000.00----------------1.00-----------------
..................................................................................................................................................GGGATGACAGGCATGCGT...................................................................................... 181.000.00---------------------1.00------------
................................................TGTCGCCCAGGCTGCAGTGCAGTGGCAACC............................................................................................................................................................................ 301.000.00-1.00--------------------------------
...........................................................................................................................CCACCACAGCCTCCGAGG............................................................................................................. 181.000.00------------------1.00---------------
..............................................TGCACTGCAGCCTGGGCGACAGA..................................................................................................................................................................................... 2301.001.00--------1.00-------------------------
...........................................................................................................GGTTCAGGTGATTTTCTTA............................................................................................................................ 191.000.00---1.00------------------------------
.................................................CACTGCACTGCAGCCTGGGCGAC.................................................................................................................................................................................. 2301.001.00-----------1.00----------------------
.................................................................................................................................TCATCCCAGCTACCCCGGAGGCTG................................................................................................. 2411.001.00--1.00-------------------------------
.........................................................GGCTGCAGTGCAGTGGCACAATGGGT....................................................................................................................................................................... 261.000.00-1.00--------------------------------
........ATATATATATATATATATATTTGGTAA....................................................................................................................................................................................................................... 271.000.00---1.00------------------------------
........................................................AGGCTGCAGTGCAGTGGTGGC............................................................................................................................................................................. 211.000.00--------------1.00-------------------
.......................................................................................................ATCACCTGAACCCGGG................................................................................................................................... 1601.001.00------------1.00---------------------
....................................................GCCCAGGCTGCAGTGCAGTTTT................................................................................................................................................................................ 221.000.00---------------------------1.00------
.....................................................................................................................................................................................................................................GATGTAGAACTCCTGGAGA.. 191.000.00-------------1.00--------------------
.........................................................GGCTGCAGTGCAGTGGCACAAGGGC........................................................................................................................................................................ 251.000.00-1.00--------------------------------
.............................................................................................................................................................................................................GGGTTTCGTCATGTTGCGATC........................ 211.000.00-----------------1.00----------------
.........................................................GGCTGCAGTGCAGTGGCAGGGC........................................................................................................................................................................... 221.000.00-1.00--------------------------------
.........................................................................................TGCAGCTTCAACTTCCTT............................................................................................................................................... 181.000.00------1.00---------------------------
......................................................................................................................................................................................................................ATCAGCCTGGGCAACATG.................. 1801.001.00--------1.00-------------------------
............................................................................................................................................................GGTCATTGTGGTGCATGC............................................................................ 1820.500.50----------------------------0.50-----
...........................................................................................................................................................................................................ATCAGCCTGGGCAACATGACGAAACCCCA.................. 2940.250.25--0.25-------------------------------
.............................................................................................................................................................................................................................TCTACATCAGCCTGGG............. 1670.140.14--------------------------------0.14-