ID: uc004eob.1_intron_6_0_chrX_107840299_f
GENE: COL4A5(7)
chrX:107840249-107840656+


(1)
AGO2.ip
(1)
BRAIN
(3)
BREAST
(11)
CELL-LINE
(2)
CERVIX
(1)
HEART
(1)
OTHER
(1)
RRP40.ip
(7)
SKIN

Sense strand
AGAAAGGGGAAAAAGGACAAGCTGGTGCAACTGGTCCCAAAGGATTACCAGTAAGTTTTGAGTATATTATAAAACAAAAAGAAGTAGAAGGAAGGCATTTTACACATTGATTTTCAATTATTCATATATATACACACATATACAATTTAATTTTTCCATTAAGTTGTACTTTGTTTGATTCCTTGACTCTTCCTGACTCACATGCCTCACTTGATTCAGCCCTTTGTACATTAAATGTTATTGGATGGGTTGAAGGGGTAAACTGGAGAGAAGAAAATGTTAGAAAAAAAGAAACTGATTTTCTTTTTCTCTTTCTTCTTTTTCCACTCTTTTTTCTTTTTTTCCTTACTCATTTCAGGGCATTCCAGGAGCTCCAGGTGCTCCAGGCTTTCCTGGATCTAAAGGTGA
............................................................................................................................................................................((((.((((((((((((...((((.(((..((...))..))).)))).((..((.((((...))))))..))..))))).))))))))))).(((((((((((((.((..(((((.((((((..((.........))..)))))).)))))..))....)))))))))))))................................................................
........................................................................................................................................................................169.................................................................................................................................................................................349.........................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR040042(GSM532927)
G428N. (cervix)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
TAX577579(Rovira)
total RNA. (breast)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................................................................................................................................................................................................................................................................................................ACTCTTTTTTCTTTTTTTAG...............................................................204.000.001.003.00-------------------------
..........................................................................................................................................................................................................................................................................................................TTTTCTTTTTCTCTTTCTTCTTTTTTTGG.................................................................................293.000.00--1.002.00-----------------------
.....................................................................................................................................................................................................................................................................................................................................ACTCTTTTTTCTTTTTTTCTTG.............................................................222.000.002.00--------------------------
....................................................................................................................................................................................................................................................................................................................................CACTCTTTTTTCTTTTTTTAG...............................................................212.000.001.001.00-------------------------
.....................................................................................................................................................................................................................................................................................................................................ACTCTTTTTTCTTTTTTATTG..............................................................212.000.00-2.00-------------------------
...............................................................................................................................................................................................................................................................................................................TTTTTCTCTTTCTTCTTTTGGTT..................................................................................232.000.00--2.00------------------------
.......................................................................................................................................................................................................................................................................................................................................TCTTTTTTCTTTTTTTCCTTGGAC.........................................................242.000.00---2.00-----------------------
.........................................................................................................................................................................................................................................................................................................................TCTTCTTTTTCCACTCTTTTTTCTTTTCTTC................................................................312.000.00---2.00-----------------------
...AAGGGGAAAAAGGACAAGCT.................................................................................................................................................................................................................................................................................................................................................................................................2012.002.00--------------1.001.00-----------
.............................................................................................................................................................................TTTGATTCCTTGACTCTTCCT......................................................................................................................................................................................................................2111.001.00--------1.00------------------
.....................................................................................................................................................................................................................................................................................................................................ACTCTTTTTTCTTTTTTTCAAG.............................................................221.000.00--1.00------------------------
...................................................................................................................................................................................................................................................................................................................................CCACTCTTTTTTCTTTTCTG.................................................................201.000.001.00--------------------------
..............................................................................................................................................................................................................................................................................................................CTTTTTCTCTTTCTTCTTTTATT...................................................................................231.000.00----1.00----------------------
.......................................................................................................................................................................................................................................................................................................................................TCTTTTTTCTTTTTTTCCCTTG...........................................................221.000.00----1.00----------------------
..........................................................................................................................................................................................................................................ATGTTATTGGATGGGTTGAAGGGGTAAACTGGAGA...........................................................................................................................................3511.001.00------1.00--------------------
...........................................................................................................................................................................................................................................................................................................................................................................TCCAGGAGCTCCAGGTGC...........................1811.001.00----------------1.00----------
.........................................................................................................................................................................................................................................................................................................ATTTTCTTTTTCTCTTTCTTCTTTG......................................................................................251.000.00-1.00-------------------------
.................................................................................................................................................................................................................................................................................................................TTTCTCTTTCTTCTTTTTCCATCTA..............................................................................251.000.00---1.00-----------------------
.........................................................................................................................................................................................................................................................................................................ATTTTCTTTTTCTCTTTCTTACC........................................................................................231.000.00----1.00----------------------
....................................................................................................................................................................................................................................................................................................................................CACTCTTTTTTCTTTTTTTTTAG.............................................................231.000.001.00--------------------------
..............................................................................AAGAAGTAGAAGGAAGGCCGG.....................................................................................................................................................................................................................................................................................................................211.000.00---1.00-----------------------
...............................................................................................................................................................................................................................................................................................................TTTTTCTCTTTCTTCTTTTTCAG..................................................................................231.000.001.00--------------------------
....................................................................................................................................................................................................................................................................................................................................CACTCTTTTTTCTTTTTTTTCAT.............................................................231.000.001.00--------------------------
.........................................................................................................................................................................................................................................................................................................ATTTTCTTTTTCTCTTTAAC...........................................................................................201.000.00--1.00------------------------
.....................................................................................................................................................................................................................................................................................................................TCTTTCTTCTTTTTCGAAG................................................................................191.000.00---1.00-----------------------
..........AAAAGGACAAGCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................171.000.00-------------1.00-------------
...................................................................................................................................................................................................................................................................................................................................CCACTCTTTTTTCTTTTTTTCTTTG............................................................251.000.00-1.00-------------------------
...........................................................................................................................................................................................................................................................................................................TTTCTTTTTCTCTTTCTTCAG........................................................................................211.000.00-1.00-------------------------
.........AAAAAGGACAAGCTGGTGCA...........................................................................................................................................................................................................................................................................................................................................................................................2011.001.00------------------1.00--------
.....................................................................................................................................................................................................................................................................................................................................ACTCTTTTTTCTTTTTTTCAG..............................................................211.000.00-1.00-------------------------
.......................................................................................................................................................................................................................................................................................................................TTTCTTCTTTTTCCACTATAG............................................................................211.000.001.00--------------------------
...........................................................................................................................................................................................................................................................................................................................................TTTTCTTTTTTTCCTTATCC.........................................................201.000.00----1.00----------------------
.............................................................................................................................................................................................................................................................................................................................CTTTTTCCACTCTTTATTG........................................................................191.000.00-1.00-------------------------
..........................................................................................................................................................................................................................................................................................................TTTTCTTTTTCTCTTTCTTCTGTGG.....................................................................................251.000.00--1.00------------------------
...............................................................................................................................................................................................................................................................................AGAAAATGTTAGAAAAAAAAC....................................................................................................................211.000.00-----------------1.00---------
.......................................................................................................................................................................................................................................................................................................................................TCTTTTTTCTTTTTTTCCTTGTG..........................................................231.000.001.00--------------------------
...............................................................................................................................................................................................................................................................................................................TTTTTCTCTTTCTTCTTTTTTAT..................................................................................231.000.00--1.00------------------------
..........................................................................................................................................................................................................................................................................................................TTTTCTTTTTCTCTTTCTTGGTG.......................................................................................231.000.00--1.00------------------------
..................................................................................AGTAGAAGGAAGGCATTTTGAC................................................................................................................................................................................................................................................................................................................221.000.00---1.00-----------------------
................................................................................................................................................................................................................................................................................................................TTTTCTCTTTCTTCTTTTTTTTG.................................................................................231.000.00---------1.00-----------------
....................................................................................................................................................................................................................................................................................................................................CACTCTTTTTTCTTTTCA..................................................................181.000.001.00--------------------------
...............................................................................AGAAGTAGAAGGAAGGCA.......................................................................................................................................................................................................................................................................................................................1811.001.00-------------------1.00-------
..............................................................................................................................................................................................................................................................................................................................TTTTTCCACTCTTTTTTCTTTTTT..................................................................2411.001.00--1.00------------------------
...............................................................................................................................................................................................................................................................................................................TTTTTCTCTTTCTTCTTTTTTG...................................................................................221.000.001.00--------------------------
.....................................................................................................................................................................................................................................................................................................................................ACTCTTTTTTCTTTTTTTATGG.............................................................221.000.00--1.00------------------------
...............................................................................................................................................................................................................................................................................................................TTTTTCTCTTTCTTCTTTTGGGC..................................................................................231.000.00--1.00------------------------
...........................................................................................................................................................................................................................................................................................................................................................................TCCAGGAGCTCCAGGTCAGG.........................201.000.00-----1.00---------------------
..........................................................................................................................CATATATATACACACAGATT..........................................................................................................................................................................................................................................................................201.000.00-----1.00---------------------
.....................................................................................................................................................................................................................................................................................................................................ACTCTTTTTTCTTTTTTTAGGG.............................................................221.000.00--1.00------------------------
....................................................................................................................................................................................................................................................................................................................................CACTCTTTTTTCTTTTTTTCTTG.............................................................231.000.001.00--------------------------
...............................................................................................................................................................................................................................................ATTGGATGGGTTGAAATT.......................................................................................................................................................181.000.00---------------------1.00-----
....AGGGGAAAAAGGACAAGCTGG...............................................................................................................................................................................................................................................................................................................................................................................................2111.001.00----------1.00----------------
.......................................................................................................................................................................................................................................................................................................................................TCTTTTTTCTTTTTTTCCCG.............................................................201.000.001.00--------------------------
....................................................................................................................................................................................................................................................................................................................................CACTCTTTTTTCTTTTTTTCTG..............................................................221.000.00-1.00-------------------------
....................................................................................................................................................................................................................................................................................................................................CACTCTTTTTTCTTTTTTTTCAG.............................................................231.000.00-1.00-------------------------
.....................................................................................................................................................................................................................................................................................................................................ACTCTTTTTTCTTTTTTTAGAC.............................................................221.000.00--1.00------------------------
..............................................................................................................................................CAATTTAATTTTTCCCCC........................................................................................................................................................................................................................................................181.000.00----1.00----------------------
...............................................................................................................................................................................................................................................................................................................TTTTTCTCTTTCTTCTTTTTTTTG.................................................................................241.000.00-1.00-------------------------
............................................................................AAAAGAAGTAGAAGGAAGG.........................................................................................................................................................................................................................................................................................................................1920.500.50----------------------0.50----
...........................CAACTGGTCCCAAAGG.............................................................................................................................................................................................................................................................................................................................................................................1620.500.50-----------------------0.50---
....................................................................................................................................................................................................................................................................AACTGGAGAGAAGAAAAT..................................................................................................................................1840.250.25------------------------0.25--
..........AAAAGGACAAGCTGGT..............................................................................................................................................................................................................................................................................................................................................................................................1660.170.17-------------------------0.17-
...........................................................................................................................................................................................................................................................................................................................TTCTTTTTCCACTCTTT............................................................................1790.110.11--------------------------0.11

Antisense strand
AGAAAGGGGAAAAAGGACAAGCTGGTGCAACTGGTCCCAAAGGATTACCAGTAAGTTTTGAGTATATTATAAAACAAAAAGAAGTAGAAGGAAGGCATTTTACACATTGATTTTCAATTATTCATATATATACACACATATACAATTTAATTTTTCCATTAAGTTGTACTTTGTTTGATTCCTTGACTCTTCCTGACTCACATGCCTCACTTGATTCAGCCCTTTGTACATTAAATGTTATTGGATGGGTTGAAGGGGTAAACTGGAGAGAAGAAAATGTTAGAAAAAAAGAAACTGATTTTCTTTTTCTCTTTCTTCTTTTTCCACTCTTTTTTCTTTTTTTCCTTACTCATTTCAGGGCATTCCAGGAGCTCCAGGTGCTCCAGGCTTTCCTGGATCTAAAGGTGA
............................................................................................................................................................................((((.((((((((((((...((((.(((..((...))..))).)))).((..((.((((...))))))..))..))))).))))))))))).(((((((((((((.((..(((((.((((((..((.........))..)))))).)))))..))....)))))))))))))................................................................
........................................................................................................................................................................169.................................................................................................................................................................................349.........................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR040042(GSM532927)
G428N. (cervix)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
TAX577579(Rovira)
total RNA. (breast)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................................................................................................................................................................................................................................................................TCTTCTTTTTCCACTTTA............................................................................. 181.000.00--------------------1.00------
.........................................................................................................................................................................................................................................................................................................................TCTTCTTTTTCCACTTAA............................................................................. 181.000.00-----------1.00---------------
......................................................................................................................................................................................................................................................................................GTTAGAAAAAAAGAACAG................................................................................................................ 181.000.001.00--------------------------
......................................................................................................................................................................................................................................................................................................................................CTCTTTTTTCTTTTTTTCCTCGA........................................................... 231.000.00------------1.00--------------
....................................................................................................................................................................................................................................................................................................AACTGATTTTCTTTTAAT.................................................................................................. 181.000.00-------1.00-------------------
....................................................................ACTTCTTTTTGTTTTAT................................................................................................................................................................................................................................................................................................................................... 1790.110.11--0.11------------------------