ID: uc004enj.2_intron_2_0_chrX_107018756_r
GENE: (1)
chrX:107018706-107019059-


(1)
AGO2.ip
(2)
B-CELL
(3)
BRAIN
(9)
BREAST
(9)
CELL-LINE
(6)
CERVIX
(2)
HEART
(1)
HELA
(3)
LIVER
(3)
OTHER
(12)
SKIN
(1)
XRN.ip

Sense strand
GCGCCCTGGCTCTCCCTCTGCCCTGCTGCCCGCCCTTCCTGCCTCCACAGGTCCGCCCCAATCCCCGCTCACACTTGGGAAACTTGGGACTGCGCTGGGGCCGCGTGTGGCACCTCAGGGGGGCGGCCCCCGGCCTCAAGAGGAGGGGGAGGAGAAGGAGGAAGAGGAGGAAGTGAGCCCGAAGGATCCGCTCGGAGCTGTTTGTCCAGCTGTTTCTATTCGCACCCGGAGCAGTACAGCCAGAAGGGGGCCGAGCCGAAGGTGGCTGGCTTTAGGCGCTAATTTCCAACTCTTTTCCTCACAGCTTGTCTTTTCCAGGCACCCTGGAGTCCCCTCAGGCCAGCTCGGTGGGCG
..................................................................................(((....((((.(((((((((....)))).)))....)).))))(((((..(((....))).)))))........)))..................................................................................................................................................................................................
................................................................................81...............................................................................162..............................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR189784RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR040034(GSM532919)
G001N. (cervix)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
GSM532889(GSM532889)
G576N. (cervix)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040011(GSM532896)
G529T. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
TAX577740(Rovira)
total RNA. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR040015(GSM532900)
G623T. (cervix)
.....................................................................................GGGACTGCGCTGGGGCCG...........................................................................................................................................................................................................................................................1817.007.00-4.00---2.00-1.00------------------------------------------
........................................................................ACTTGGGAAACTTGGGACTGCGC...................................................................................................................................................................................................................................................................2313.003.003.00-------------------------------------------------
..........................................................................TTGGGAAACTTGGGACTGCG....................................................................................................................................................................................................................................................................2013.003.003.00-------------------------------------------------
.......................................................................................................................................TCAAGAGGAGGGGGAGGAGAAGGAGG.................................................................................................................................................................................................2612.002.00----2.00---------------------------------------------
....................................................................................TGGGACTGCGCTGGGGC.............................................................................................................................................................................................................................................................1712.002.00-2.00------------------------------------------------
.........................................................................CTTGGGAAACTTGGGACTGC.....................................................................................................................................................................................................................................................................2012.002.00-------------------1.00-------1.00----------------------
..................................................................................CTTGGGACTGCGCTGGGGCC............................................................................................................................................................................................................................................................2011.001.00-------1.00------------------------------------------
.........................................................................................................................................AAGAGGAGGGGGAGGAGGACG....................................................................................................................................................................................................211.000.00--------1.00-----------------------------------------
...........................................................................................................................................................AGGAGGAAGAGGAGGAAGTCCT.................................................................................................................................................................................221.000.00--------1.00-----------------------------------------
..............................................................................................................................................................AGGAAGAGGAGGAAGTGAGC................................................................................................................................................................................2011.001.00------------------------------------------------1.00-
.................................................................................ACTTGGGACTGCGCTGGGGC.............................................................................................................................................................................................................................................................2011.001.001.00-------------------------------------------------
..........................................................................TTGGGAAACTTGGGACTG......................................................................................................................................................................................................................................................................1811.001.00------------------1.00-------------------------------
.....................................................................CACACTTGGGAAACTTGGGACTGC.....................................................................................................................................................................................................................................................................2411.001.00---------------------------------1.00----------------
.......................................................................................................................................................GAGAAGGAGGAAGAGGAGGAGGCT...................................................................................................................................................................................241.000.00-------------------------------------1.00------------
.....................................................................................................................GGGGGGCGGCCCCCGGCG...........................................................................................................................................................................................................................181.000.00---------------1.00----------------------------------
...............................................................................................................................................................................................................................................................CCGAAGGTGGCTGGCTTTAGGC.............................................................................2211.001.00----------------------------------------------1.00---
....................................................................................................................................................................................................................................................................GGTGGCTGGCTTTAGCTCA...........................................................................191.000.00--------------------------------------1.00-----------
................................................................................................................................................GGGGGAGGAGAAGGAGATTT..............................................................................................................................................................................................201.000.00-------------1.00------------------------------------
...............................................................................................................................................................................................................................ACCCGGAGCAGTACAGCCAGAAG............................................................................................................2311.001.00--------------------------------1.00-----------------
.......................................................................................................................GGGGCGGCCCCCGGCGCCG........................................................................................................................................................................................................................191.000.00-----------------------------------------------1.00--
.........................................................................................................................................................................................ATCCGCTCGGAGCTGTT........................................................................................................................................................1711.001.00----------------------1.00---------------------------
..........................................................................................................................................................................................TCCGCTCGGAGCTGTTTGTC....................................................................................................................................................2011.001.00-------------------------------1.00------------------
......................................................................................................................GGGGGCGGCCCCCGGCG...........................................................................................................................................................................................................................171.000.00------------1.00-------------------------------------
........................................................................ACTTGGGAAACTTGGGACTG......................................................................................................................................................................................................................................................................2011.001.00------------------------------------1.00-------------
.....................................................................................GGGACTGCGCTGGGGCCGCG.........................................................................................................................................................................................................................................................2011.001.00-----------------------------1.00--------------------
............................................................................................................................................................................................CGCTCGGAGCTGTTTGTC....................................................................................................................................................1811.001.00----1.00---------------------------------------------
..........................................................................................................................................................................................................TGTCCAGCTGTTTCTAGTC.....................................................................................................................................191.000.00--------------------------1.00-----------------------
.................................................................................................................................................................................................................................................................GAAGGTGGCTGGCTTTAGGGGCT..........................................................................231.000.00--------------------------------------------1.00-----
...........................................................................................................................................................................................................................................ACAGCCAGAAGGGGGCCGAGCC.................................................................................................2211.001.00---------------------------------------------1.00----
..GCCCTGGCTCTCCCTCTTGTC...........................................................................................................................................................................................................................................................................................................................................211.000.00----------1.00---------------------------------------
.....................................................................................................................GGGGGGCGGCCCCCGTTG...........................................................................................................................................................................................................................181.000.00-------------------------------------------------1.00
..............................................................CCCCGCTCACACTTGGGA..................................................................................................................................................................................................................................................................................1811.001.00---------------------------------------1.00----------
....................................................................................................................................................................................................GCTGTTTGTCCAGCTCATC...........................................................................................................................................191.000.00----------1.00---------------------------------------
........................................................................ACTTGGGAAACTTGGGACTGC.....................................................................................................................................................................................................................................................................2111.001.00----------------------------1.00---------------------
..........................................................................................................................................................................................................................................................................................TTTCCAACTCTTTTCTCCT.....................................................191.000.00------1.00-------------------------------------------
..............................CGCCCTTCCTGCCTCACCG.................................................................................................................................................................................................................................................................................................................191.000.00------------------------------1.00-------------------
.....................................................................................................................................................................................................................................................GGGGGCCGAGCCGAAGGTGGCTGG.....................................................................................2411.001.00------------------------------------------1.00-------
...................................................................................................................................................GGAGGAGAAGGAGGATGAT............................................................................................................................................................................................191.000.00-----------------1.00--------------------------------
..................................................................................................................................................................................................................................................................AAGGTGGCTGGCTTTAGGCGCTAATT......................................................................2611.001.00-----------------------------------------1.00--------
...............................................................................................................................................................GGAAGAGGAGGAAGTGGAT................................................................................................................................................................................191.000.00----------------------------------1.00---------------
.................................CCTTCCTGCCTCCACAG................................................................................................................................................................................................................................................................................................................1760.170.17-----------0.17--------------------------------------

Antisense strand
GCGCCCTGGCTCTCCCTCTGCCCTGCTGCCCGCCCTTCCTGCCTCCACAGGTCCGCCCCAATCCCCGCTCACACTTGGGAAACTTGGGACTGCGCTGGGGCCGCGTGTGGCACCTCAGGGGGGCGGCCCCCGGCCTCAAGAGGAGGGGGAGGAGAAGGAGGAAGAGGAGGAAGTGAGCCCGAAGGATCCGCTCGGAGCTGTTTGTCCAGCTGTTTCTATTCGCACCCGGAGCAGTACAGCCAGAAGGGGGCCGAGCCGAAGGTGGCTGGCTTTAGGCGCTAATTTCCAACTCTTTTCCTCACAGCTTGTCTTTTCCAGGCACCCTGGAGTCCCCTCAGGCCAGCTCGGTGGGCG
..................................................................................(((....((((.(((((((((....)))).)))....)).))))(((((..(((....))).)))))........)))..................................................................................................................................................................................................
................................................................................81...............................................................................162..............................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR189784RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR040034(GSM532919)
G001N. (cervix)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
GSM532889(GSM532889)
G576N. (cervix)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040011(GSM532896)
G529T. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR189782SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
TAX577740(Rovira)
total RNA. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR040015(GSM532900)
G623T. (cervix)
.....................................................................................................................GGGGGGCGGCCCCCGCGG........................................................................................................................................................................................................................... 187.000.00--3.004.00----------------------------------------------
.....................................................................................................................GGGGGGCGGCCCCCGC............................................................................................................................................................................................................................. 162.000.00---------2.00----------------------------------------
.....................................................................................................................GGGGGGCGGCCCCCGGGCC.......................................................................................................................................................................................................................... 191.000.00-----------------------1.00--------------------------
.......................................................GTGTGAGCGGGGATTGGGG........................................................................................................................................................................................................................................................................................ 1911.001.00-----------------------------------1.00--------------
...................................................TCCGCCCCAATCCCCAAC............................................................................................................................................................................................................................................................................................. 181.000.00------------------------1.00-------------------------
..........................................................................................................................................AGAGGAGGGGGAGGAGACCCG................................................................................................................................................................................................... 211.000.00------1.00-------------------------------------------
.....................................................................................................................GGGGGGCGGCCCCCGCCA........................................................................................................................................................................................................................... 181.000.00--------------------1.00-----------------------------
............................................................................GGGAAACTTGGGACTGT..................................................................................................................................................................................................................................................................... 171.000.00----------------1.00---------------------------------
................................................................................................................................................GGGGGAGGAGAAGGAGGATGC............................................................................................................................................................................................. 211.000.00----------------------------------------1.00---------
......................................................................................................................GGGGGCGGCCCCCGGGGC.......................................................................................................................................................................................................................... 181.000.00-----------1.00--------------------------------------
.....................................................................................................................GGGGGGCGGCCCCCGCGA........................................................................................................................................................................................................................... 181.000.00--1.00-----------------------------------------------
................................................................................................................................................GGGGGAGGAGAAGGACCCA............................................................................................................................................................................................... 191.000.00-------------------------------------------1.00------
.......................................................................................................................GGGGCGGCCCCCGGCCAT......................................................................................................................................................................................................................... 181.000.00---------------------1.00----------------------------
.....................................................................................................................GGGGGGCGGCCCCCGCT............................................................................................................................................................................................................................ 171.000.00--------------1.00-----------------------------------
......................................................................................................................GGGGGCGGCCCCCGGGGG.......................................................................................................................................................................................................................... 181.000.00-------------------------1.00------------------------