ID: uc004enh.2_intron_1_0_chrX_106959181_r.3p
GENE: (1)
chrX:106959131-106959380-


(1)
AGO2.ip 		(4)
B-CELL 		(7)
BREAST 		(15)
CELL-LINE 		(4)
HEART 		(3)
HELA 		(5)
LIVER 		(1)
OTHER 		(18)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CGGCCTGGATGAGGAGATGCAGCTTCCTGCAGGGGCCAAGGAAGGATCTGGGGACAAACTGTCCGGAACTCTGGGCCAGGGAGGCGAGAAGGAGAGAGAGAGGAAGAGCCGAGGCAGATGGAGGACTTTGGCCACAACTGCCATGTACTCAAGAGTAGAACCGAGTGGGTAATGGGTCGCTTTGCTTTTTGTCTTGGCAGTGCCTCCGGAGCCAGCGTGGTGGCCATAGACAACAAGATCGAACAGGCCA
..........................................................................................................................................(((((...((..((((((((((((..((.....)).)))...))))))))).))..)))))...................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
.............................................................................................................................................................................GGGTCGCTTTGCTTTTTGTCTT.......................................................2215.005.00-5.00--------------------------------------------------------
..................................GCCAAGGAAGGATCTGGGGACAAACT..............................................................................................................................................................................................2613.003.00--------3.00-------------------------------------------------
...............................................................................................................................................TGTACTCAAGAGTAGAACCGAGTG...................................................................................2412.002.001.00--------1.00------------------------------------------------
..GCCTGGATGAGGAGATGC......................................................................................................................................................................................................................................1812.002.00-----2.00----------------------------------------------------
..........................................................CTGTCCGGAACTCTGGGCCAGGGAGGCGAGA.................................................................................................................................................................3112.002.00----------------2.00-----------------------------------------
...........................................................................CCAGGGAGGCGAGAAGGAGA...........................................................................................................................................................2012.002.00----------------------2.00-----------------------------------
.........................................................................................................GAGCCGAGGCAGATGGAGGACTTTGG.......................................................................................................................2612.002.00--1.00--------------------------1.00----------------------------
........................................................................................................................................................GAGTAGAACCGAGTGGG.................................................................................1712.002.00------2.00---------------------------------------------------
......................................AGGAAGGATCTGGGGACAAACTG.............................................................................................................................................................................................2311.001.00--1.00-------------------------------------------------------
............................................................GTCCGGAACTCTGGGCCAGGGAGGA.....................................................................................................................................................................251.000.00---------------------1.00------------------------------------
................................................................................................................................................GTACTCAAGAGTAGAACCGAGTGGGT................................................................................2611.001.00---------------1.00------------------------------------------
................................................................................................................................................................................................................GAGCCAGCGTGGTGGCCATAG.....................2111.001.00----------1.00-----------------------------------------------
..............................................TCTGGGGACAAACTGTCCGGAACTCTGGGC..............................................................................................................................................................................3011.001.00-------------1.00--------------------------------------------
...................................................................................................................................................................................................................................AGACAACAAGATCGAACAGG...2011.001.00---------------------1.00------------------------------------
.....................................AAGGAAGGATCTGGGGA....................................................................................................................................................................................................1721.001.00----1.00-----------------------------------------------------
..............................................................................................................GAGGCAGATGGAGGACTTTG........................................................................................................................2011.001.00---1.00------------------------------------------------------
...................................CCAAGGAAGGATCTGGGGATA..................................................................................................................................................................................................2111.001.00-----------1.00----------------------------------------------
..................................GCCAAGGAAGGATCTGGGGAA...................................................................................................................................................................................................211.000.001.00---------------------------------------------------------
...............................................................CGGAACTCTGGGCCAGGGAGG......................................................................................................................................................................2111.001.001.00---------------------------------------------------------
...................................CCAAGGAAGGATCTGGGGACA..................................................................................................................................................................................................2111.001.00-----------1.00----------------------------------------------
.................................GGCCAAGGAAGGATCTGGGGACAAACTGT............................................................................................................................................................................................2911.001.00--------------------1.00-------------------------------------
....................................CAAGGAAGGATCTGGGGACAAACTGTCCGGA.......................................................................................................................................................................................3111.001.00--1.00-------------------------------------------------------
...................................................................................................................................................................................................................................AGACAACAAGATCGAACAGGCC.2211.001.00------------------1.00---------------------------------------
...............................................................CGGAACTCTGGGCCAGGGAGGCGA...................................................................................................................................................................2411.001.00-------1.00--------------------------------------------------
...................................CCAAGGAAGGATCTGGGGA....................................................................................................................................................................................................1911.001.00-------------------1.00--------------------------------------
.......................................................................................................AAGAGCCGAGGCAGATGGA................................................................................................................................1911.001.00-------------------------------------------------------1.00--
...................................................GGACAAACTGTCCGGAACTCTGGGCCAGG..........................................................................................................................................................................2911.001.00----------------------------------------------------1.00-----
.........................................................................................................................AGGACTTTGGCCACAACTGCCATGTACTCAAG.................................................................................................3211.001.00--------------------------1.00-------------------------------
....................................................................................CGAGAAGGAGAGAGAGAGG...................................................................................................................................................1911.001.00----------------------------------1.00-----------------------
..GCCTGGATGAGGAGATGCAGCTTCCTGCAGGGG.......................................................................................................................................................................................................................3311.001.00------------1.00---------------------------------------------
..................................................................................................................CAGATGGAGGACTTTGGC......................................................................................................................1811.001.00--------------1.00-------------------------------------------
...............................................................................................................................................................ACCGAGTGGGTAATGGGTCG.......................................................................2011.001.00-----------------1.00----------------------------------------
...............................................................................................................AGGCAGATGGAGGACTTTGGCCACAACTG..............................................................................................................2911.001.00----------------------------1.00-----------------------------
.................................................................................................................................................................................................................................ATAGACAACAAGATCGAACAGGCC.2411.001.00-------------1.00--------------------------------------------
.....................................................................................................................................................CAAGAGTAGAACCGAG.....................................................................................1611.001.00------------------------1.00---------------------------------
...................................................................................................................................................CTCAAGAGTAGAACCGAGTGGG.................................................................................2211.001.00-------1.00--------------------------------------------------
.............................................................................................................................................................................................................CCGGAGCCAGCGTGGTGGCCA........................2111.001.00----------------------------------------1.00-----------------
...............................................................CGGAACTCTGGGCCAGGG.........................................................................................................................................................................1811.001.00--------------------------------------------1.00-------------
...................................................................................................................................................................................................................................AGACAACAAGATCGAACAGGCCA2311.001.00--------------1.00-------------------------------------------
.......................................................................................................................................................................................................................CGTGGTGGCCATAGACAACAAGATC..........2511.001.00--1.00-------------------------------------------------------
..................................................................................................AGAGGAAGAGCCGAGGCA......................................................................................................................................1811.001.00------------------1.00---------------------------------------
...............................................................................................................AGGCAGATGGAGGACTTTA........................................................................................................................1911.001.00-------1.00--------------------------------------------------
........................................................................................................................................................................................................................GTGGTGGCCATAGACAACAAGATCGA........2611.001.00--------------------------------------1.00-------------------
..................................................................................................................................................ACTCAAGAGTAGAACCGAGT....................................................................................2011.001.00------------1.00---------------------------------------------
...................................................................................................................................................................................................................CCAGCGTGGTGGCCATAGA....................1911.001.00----1.00-----------------------------------------------------
............................................................GTCCGGAACTCTGGGCCAGGGAGGCGAGAAGGCGA...........................................................................................................................................................351.000.00-----------------------------------------1.00----------------
.................................................GGGGACAAACTGTCCGGAACTCTGGGCCAGGG.........................................................................................................................................................................3211.001.00-----------------------------------------------1.00----------
...............................................................................................................AGGCAGATGGAGGACTAAA........................................................................................................................191.000.001.00---------------------------------------------------------
........................................GAAGGATCTGGGGACAAAC...............................................................................................................................................................................................1911.001.00-------------------------------1.00--------------------------
...............................................................................................................AGGCAGATGGAGGACTTTG........................................................................................................................1911.001.00---1.00------------------------------------------------------
.....................................................................................................................................................................TGGGTAATGGGTCGCTTT...................................................................1811.001.00----1.00-----------------------------------------------------
...................................CCAAGGAAGGATCTGGGGAA...................................................................................................................................................................................................2011.001.001.00---------------------------------------------------------
..........................................................................................................................................................................................................................................AAGATCGAACAGGCCGTG181.000.00-----1.00----------------------------------------------------
.........................................AAGGATCTGGGGACAAACTGTCCGG........................................................................................................................................................................................2511.001.00---------------------------------------------1.00------------
......................................................................................................................................................AAGAGTAGAACCGAGT....................................................................................1611.001.00------------------------------------------------1.00---------
.........................................................................................................................................................AGTAGAACCGAGTGGTTGC..............................................................................191.000.00---------------------------------------1.00------------------
.........................................................................................................................................................AGTAGAACCGAGTGGGTAATGGG..........................................................................2311.001.00-------------------------------------------------1.00--------
.......................................................................................................................................................................................................................................AACAAGATCGAACAGGCC.1811.001.00---------------------------------1.00------------------------
...........................................................................................................GCCGAGGCAGATGGAGGACTT..........................................................................................................................2111.001.00-------------------------------------1.00--------------------
....................................................................................................................................................TCAAGAGTAGAACCGAGTGGGTAATGGG..........................................................................2811.001.00--------------------------------------------------1.00-------
.............................................................................................................CGAGGCAGATGGAGGACTTTGGC......................................................................................................................2311.001.00-----------------------1.00----------------------------------
.........................................................................................................................................................................................................GCCTCCGGAGCCAGCGTGGTG............................2111.001.00-----------------------------------------------------1.00----
...............................................................CGGAACTCTGGGCCAGGGAGGCGAGAAG...............................................................................................................................................................2811.001.00------------------------------------------------------1.00---
..........................................................................................................................................................GTAGAACCGAGTGGGTAATGG...........................................................................2111.001.00---------------------------1.00------------------------------
.......................................................................................GAAGGAGAGAGAGAGGAAGAGCCG...........................................................................................................................................2411.001.00------------------------------1.00---------------------------
..............................................................................................................GAGGCAGATGGAGGACTTTGG.......................................................................................................................2111.001.00---1.00------------------------------------------------------
..............................................................................................................................................................................................................CGGAGCCAGCGTGGTGGCCATAGAC...................2511.001.00------------------------------------------1.00---------------
...............................................................................................................AGGCAGATGGAGGACTTT.........................................................................................................................1811.001.00---------1.00------------------------------------------------
...............................................................................................................AGGCAGATGGAGGACTTTGG.......................................................................................................................2011.001.00-----------------------------------1.00----------------------
.........................................................ACTGTCCGGAACTCTGGGCCAGGGAGGCGA...................................................................................................................................................................3011.001.00----------1.00-----------------------------------------------
.......................................................................................................................................................................................................................CGTGGTGGCCATAGACAACAA..............2111.001.00--------------------------------1.00-------------------------
....................................................................................................................................................................................................................................GACAACAAGATCGAACAGGCCA2211.001.001.00---------------------------------------------------------
.......................................................................................................................................................................................................................................AACAAGATCGAACAGGCCA1911.001.00-----------------1.00----------------------------------------
.............................................................................................................................................................................................................................GGCCATAGACAACAAGATCGGA.......221.000.00-------------------1.00--------------------------------------
........................................................................................................................................................................................................................................ACAAGATCGAACAGGAG.171.000.00---------------------------------------------------1.00------
...CCTGGATGAGGAGATGCAGCTA.................................................................................................................................................................................................................................221.000.00---------1.00------------------------------------------------
..............................AGGGGCCAAGGAAGGATAT.........................................................................................................................................................................................................191.000.00------------------------------------1.00---------------------
...........................................................................................................................................................................................TTTGTCTTGGCAGTGCCTCCGGAGCCA....................................2711.001.00----------------------------------------------1.00-----------
.............................................................................................................CGAGGCAGATGGAGGACTTTGG.......................................................................................................................2211.001.00--------------------1.00-------------------------------------
...............................................................................................................................................................ACCGAGTGGGTAATGG...........................................................................1611.001.00------1.00---------------------------------------------------
.....................................AAGGAAGGATCTGGGGAC...................................................................................................................................................................................................1821.001.00----1.00-----------------------------------------------------
..............................................................................................................................................................................................................................GCCATAGACAACAAGATCGAAC......2211.001.00-------------------------1.00--------------------------------
...................................................................................................GAGGAAGAGCCGAGGCA......................................................................................................................................1720.500.50--------------------------------------------------------0.50-
............................................GATCTGGGGACAAACTG.............................................................................................................................................................................................1720.500.50-----0.50----------------------------------------------------
..........................................................................................................................................................GTAGAACCGAGTGGG.................................................................................1520.500.50---------------------------------------------------------0.50
......................................AGGAAGGATCTGGGGAC...................................................................................................................................................................................................1740.250.25-----------------------0.25----------------------------------
....................................................................................CGAGAAGGAGAGAGAG......................................................................................................................................................1670.140.14------------------------0.14---------------------------------

Antisense strand
CGGCCTGGATGAGGAGATGCAGCTTCCTGCAGGGGCCAAGGAAGGATCTGGGGACAAACTGTCCGGAACTCTGGGCCAGGGAGGCGAGAAGGAGAGAGAGAGGAAGAGCCGAGGCAGATGGAGGACTTTGGCCACAACTGCCATGTACTCAAGAGTAGAACCGAGTGGGTAATGGGTCGCTTTGCTTTTTGTCTTGGCAGTGCCTCCGGAGCCAGCGTGGTGGCCATAGACAACAAGATCGAACAGGCCA
..........................................................................................................................................(((((...((..((((((((((((..((.....)).)))...))))))))).))..)))))...................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
..................................................................................................................................................................AGCGACCCATTACCCACTC..................................................................... 1911.001.00---1.00------------------------------------------------------
...................................................................................................................................................CTCGGTTCTACTCTTGAG..................................................................................... 1811.001.00-------------------------------------------1.00--------------
........................................................................................................................................................................................................................ATCTTGTTGTCTATGGCCACCAC........... 2311.001.00---------------1.00------------------------------------------