ID: uc004ekt.2_intron_1_0_chrX_102884502_f
GENE: (2)
chrX:102884452-102884862+


(1)
AGO2.ip 		(3)
B-CELL 		(6)
BRAIN 		(11)
BREAST 		(23)
CELL-LINE 		(8)
CERVIX 		(1)
FIBROBLAST 		(4)
HEART 		(3)
HELA 		(1)
KIDNEY 		(3)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(30)
SKIN 		(1)
XRN.ip

Sense strand
AGAGGACGACTAGGAGCACACGGCCCGGAAAGGTCCAGGTCAGGGAAGGGGTACGCAGTGGGCCGGGACTGGGGCGCGAGGGTGGACGCCGAAAGGCATGGAGTCTGCAGGCCGCACTGTCCCGCCCCTGTCACTGCGGGCGAGGCCTGTAGCAAAGCCTGCTGGGAAAATGGTGGGCTTTCGGGAAGGAGGGGGCGACCGGGAAGCGGCGGAGTCGGGAGAGCCGGAGAGCCTCTGGGAAAGCGCAAGGTTGAGGACCTGGCCCCCGAATCAGGAAAAGGCAGGTATTGGAACCCACGGCCTGGGTGTTAGTCCAGCCGCTTAGTATTCTGACTCTATTCTGCCTTTCTTGTCTCCTAAGAATAACTGTGCTTGAAGAAGAAAATTCCCAACATGGACAAACCACGCAAA
.................................................................................................................................................................................................................................................................................................(((.....(((.(((((......)))))))).((((....)))).....................)))......................................................
...............................................................................................................................................................................................................................................................................................288......................................................................361................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189782TAX577580(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038861(GSM458544)
MM466. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040011(GSM532896)
G529T. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR040036(GSM532921)
G243N. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR037931(GSM510469)
293GFP. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		SRR040025(GSM532910)
G613T. (cervix)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037938(GSM510476)
293Red. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040032(GSM532917)
G603N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038862(GSM458545)
MM472. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040015(GSM532900)
G623T. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM532887(GSM532887)
G761N. (cervix)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
..............................................................................................................................................................................................................CGGCGGAGTCGGGAGAGCCGGAGAGCCTCTGGGAAAGCGCAAGGTTGAGGACCTGGCCCCCGAATCAGGAAAAG...................................................................................................................................7416.006.00----6.00--------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................GTCGGGAGAGCCGGAGAGCCTCTGGG............................................................................................................................................................................2615.005.00-5.00-----------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................ACCCACGGCCTGGGTGTTAG...................................................................................................2014.004.004.00------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................GGCGGAGTCGGGAGAGCCGG........................................................................................................................................................................................2013.003.00--------3.00----------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................GTCGGGAGAGCCGGAGAGC...................................................................................................................................................................................1913.003.003.00------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................CGGAGAGCCTCTGGGAAAGC.......................................................................................................................................................................2013.003.00-1.00-------------------------1.00-----------------------------------1.00---------------------------------
............................................................................................................................................CGAGGCCTGTAGCAAAGC.............................................................................................................................................................................................................................................................1812.002.002.00------------------------------------------------------------------------------------------------
....GACGACTAGGAGCACACGGCCC.................................................................................................................................................................................................................................................................................................................................................................................................2212.002.00-----------2.00-------------------------------------------------------------------------------------
..AGGACGACTAGGAGCACACGGCCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................3012.002.00-------2.00-----------------------------------------------------------------------------------------
................................................................................................................................................................................................................................CGGAGAGCCTCTGGGAAAGCG......................................................................................................................................................................2112.002.00-1.00------------------------------------1.00----------------------------------------------------------
....................................................................................................................................................................................................................AGTCGGGAGAGCCGGAGAG....................................................................................................................................................................................1912.002.00--------------------------------------------1.00--------1.00-------------------------------------------
............................................................................................................................................................................GTGGGCTTTCGGGAAGGAG............................................................................................................................................................................................................................1912.002.00--2.00----------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................AAGGTTGAGGACCTGGCCCC.................................................................................................................................................2012.002.002.00------------------------------------------------------------------------------------------------
.......GACTAGGAGCACACGGC...................................................................................................................................................................................................................................................................................................................................................................................................1712.002.002.00------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................AAGCGCAAGGTTGAGGAC.........................................................................................................................................................1812.002.00---1.00-1.00-------------------------------------------------------------------------------------------
......CGACTAGGAGCACACGG....................................................................................................................................................................................................................................................................................................................................................................................................1712.002.00---------2.00---------------------------------------------------------------------------------------
..........................................................................................GAAAGGCATGGAGTCTGCAGGC...........................................................................................................................................................................................................................................................................................................2212.002.00----------------------2.00--------------------------------------------------------------------------
..................................................................................................................................................................................................................................GAGAGCCTCTGGGAAAGCGC.....................................................................................................................................................................2012.002.00--2.00----------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................CCTTTCTTGTCTCCTAAG..................................................1812.002.00------------------------------------------------------1.00---1.00--------------------------------------
.....................................................................................................................................................................................................................GTCGGGAGAGCCGGAGAGCC..................................................................................................................................................................................2012.002.00-2.00-----------------------------------------------------------------------------------------------
..........................................................................................................................................GGCGAGGCCTGTAGCAAAGC.............................................................................................................................................................................................................................................................2012.002.00--2.00----------------------------------------------------------------------------------------------
...............................GGTCCAGGTCAGGGAAGGGG........................................................................................................................................................................................................................................................................................................................................................................2012.002.00--2.00----------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................GTGCTTGAAGAAGAAAATTCCCA....................2311.001.00---------------------------------1.00---------------------------------------------------------------
...GGACGACTAGGAGCACACGGCCCGGAAAGGT.........................................................................................................................................................................................................................................................................................................................................................................................3111.001.00-------------------------------------------------------------------------1.00-----------------------
....................................................................................................................................................................................................................AGTCGGGAGAGCCGGGG......................................................................................................................................................................................171.000.00-----------------------------------------------------------------1.00-------------------------------
..AGGACGACTAGGAGCACACGG....................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-----------------------------------------1.00-------------------------------------------------------
..............................................................................................................................................................................................GGGGGCGACCGGGAATTT...........................................................................................................................................................................................................181.000.00-1.00-----------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................GTCGGGAGAGCCGGAGAG....................................................................................................................................................................................1811.001.00----------------------------------------------------1.00--------------------------------------------
.......................................................................................................................................................................................................................................................AGGTTGAGGACCTGGCC...................................................................................................................................................1711.001.00-----------------------------------------------------------------------------------1.00-------------
...................................................................................................................................................................................................................................AGAGCCTCTGGGAAAGCGCAAGGTT...............................................................................................................................................................2511.001.00---------------------------------------------------------------------------------------1.00---------
.............................................................................................................................................................................................................GCGGCGGAGTCGGGAGAGC...........................................................................................................................................................................................1911.001.00----------------------------------1.00--------------------------------------------------------------
.....ACGACTAGGAGCACACGGC...................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-1.00-----------------------------------------------------------------------------------------------
................................................................................................................................................................................................................GCGGAGTCGGGAGAGCACAT.......................................................................................................................................................................................201.000.00--------------------------------1.00----------------------------------------------------------------
............................................................................................................................................................................................................................................................................................GTATTGGAACCCACGG...............................................................................................................1611.001.00-----1.00-------------------------------------------------------------------------------------------
.................................TCCAGGTCAGGGAAGGGGTAC.....................................................................................................................................................................................................................................................................................................................................................................2111.001.00-------------------------------1.00-----------------------------------------------------------------
.GAGGACGACTAGGAGCACAC......................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00------------------1.00------------------------------------------------------------------------------
....................................................................................................................................................................................................................AGTCGGGAGAGCCGGCGAT....................................................................................................................................................................................191.000.00-------------------------------------------------------------1.00-----------------------------------
........................................................................................................................................................................................................................................................................CCCGAATCAGGAAAAGG..................................................................................................................................1711.001.00---1.00---------------------------------------------------------------------------------------------
...........................................................................................................................................GCGAGGCCTGTAGCAAAGCC............................................................................................................................................................................................................................................................2011.001.00--1.00----------------------------------------------------------------------------------------------
...GGACGACTAGGAGCACACGGCCC.................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00--------------------------------------------------1.00----------------------------------------------
.................................................................................................................................................................................................................CGGAGTCGGGAGAGCCGGAG......................................................................................................................................................................................2011.001.00-------------------------------------------------------------------1.00-----------------------------
.....................................................................................................................................................................................................ACCGGGAAGCGGCGGAGTCGGGAGAGCC..........................................................................................................................................................................................2811.001.00--------------------1.00----------------------------------------------------------------------------
.................................................................................................................................................................................................................CGGAGTCGGGAGAGCCGGC.......................................................................................................................................................................................1911.001.00------------------------------------------1.00------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................AGTATTCTGACTCTATTCTG....................................................................2011.001.00-----------------------------------------------------------1.00-------------------------------------
.................ACACGGCCCGGAAAGTG.........................................................................................................................................................................................................................................................................................................................................................................................171.000.00----------------1.00--------------------------------------------------------------------------------
...............................................................................................................................................................................................................................CCGGAGAGCCTCTGGGAAAGC.......................................................................................................................................................................2111.001.00--1.00----------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................GGAGAGCCTCTGGGAAAGCG......................................................................................................................................................................2011.001.00--1.00----------------------------------------------------------------------------------------------
.............................................................................................................................................................................TGGGCTTTCGGGAAGGAGGGGG........................................................................................................................................................................................................................2211.001.00------------------------------------------------------------1.00------------------------------------
........................................................................................................................................................................................................................................................GGTTGAGGACCTGGCCCCCGA..............................................................................................................................................2111.001.00---------------------1.00---------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................CCCGAATCAGGAAAAGGC.................................................................................................................................1811.001.00----------------------------------------------------------------------------------1.00--------------
................................................................................................................................................................................................................................CGGAGAGCCTCTGGGAAACCG......................................................................................................................................................................211.000.00--------------------------------------------------------------1.00----------------------------------
.................................................................................................................................................................................................................CGGAGTCGGGAGAGCACA........................................................................................................................................................................................181.000.00----------------------------------------------------------------------------1.00--------------------
....GACGACTAGGAGCACACGGCCCGGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................2811.001.00-------------------------------------------------1.00-----------------------------------------------
.........................................................................................................................................................................................................................................................GTTGAGGACCTGGCCCCCGAAT............................................................................................................................................2211.001.00---------------1.00---------------------------------------------------------------------------------
.....................................................................................................................................................................................................................GTCGGGAGAGCCGGAGAGCCTCTT..............................................................................................................................................................................241.000.00----------1.00--------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................TTAGTCCAGCCGCTTAGTAT...................................................................................2011.001.00--------------1.00----------------------------------------------------------------------------------
....GACGACTAGGAGCACACGGCC..................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00---------------------------------------------------------------------------1.00---------------------
.........................................................................................................................................................................................................................................................................................................................................................................AATAACTGTGCTTGAAGAAG..............................2011.001.00--------------------1.00----------------------------------------------------------------------------
..........TAGGAGCACACGGCCATTG..............................................................................................................................................................................................................................................................................................................................................................................................191.000.00------------------------------1.00------------------------------------------------------------------
...............................................................................................................................................................................................GGGGCGACCGGGAAGCG...........................................................................................................................................................................................................1711.001.00-------------------------------------------------------------------------------1.00-----------------
...................................................................................................................................................................................................................GAGTCGGGAGAGCCGGAGAG....................................................................................................................................................................................2011.001.00---------------------------------------------------------1.00---------------------------------------
...............................................................................................................................................................................................................................................AAAGCGCAAGGTTGAGGACCTG......................................................................................................................................................2211.001.00--------------------------------------------------------1.00----------------------------------------
.....................................................................................................................................................................................................ACCGGGAAGCGGCGGAGTCGG.................................................................................................................................................................................................2111.001.00--------------------------------------------------------------------1.00----------------------------
.................................................................................................................................................................................................................................GGAGAGCCTCTGGGAAAGCGCAAGGTTGAGGACC........................................................................................................................................................3411.001.00------1.00------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................GCGCAAGGTTGAGGACCTGGA....................................................................................................................................................211.000.00--------------1.00----------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................TAAGAATAACTGTGCTTGAAGAAGAAAA..........................2811.001.00------------------------------------------------1.00------------------------------------------------
.GAGGACGACTAGGAGCACACGGCCCG................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00-----------------------------------1.00-------------------------------------------------------------
..................................................................................................................................................................................................................GGAGTCGGGAGAGCCGGAGAGCCT.................................................................................................................................................................................2411.001.00------------------------------------------------------------------------1.00------------------------
.....................................................................................................................................................................................................................GTCGGGAGAGCCGGAGACT...................................................................................................................................................................................191.000.00--------------------------------------------------------------------------------1.00----------------
................................................................................................................................................................................................................................CGGAGAGCCTCTGGGAAAGCGC.....................................................................................................................................................................2211.001.00-1.00-----------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................GTCGGGAGAGCCGGAGAGCCTCTG..............................................................................................................................................................................2411.001.00----------1.00--------------------------------------------------------------------------------------
........................................................................................................................................................................................................GGGAAGCGGCGGAGTTCA.................................................................................................................................................................................................181.000.00------------------------1.00------------------------------------------------------------------------
.....................................................................................................................................................................................................................GTCGGGAGAGCCGGA.......................................................................................................................................................................................1511.001.00---1.00---------------------------------------------------------------------------------------------
.............................................................................................................................................................................................AGGGGGCGACCGGGAA..............................................................................................................................................................................................................1611.001.00------------------------------------------------------------------1.00------------------------------
.......................................................................................................................................................................................................CGGGAAGCGGCGGAGT....................................................................................................................................................................................................1611.001.00--------------------------1.00----------------------------------------------------------------------
....................................................................................................................................................................................................GACCGGGAAGCGGCGAC......................................................................................................................................................................................................171.000.00-------------------------1.00-----------------------------------------------------------------------
................................................................................................................................................................................................................................................................................AGGAAAAGGCAGGTATTGGAACCC...................................................................................................................2411.001.00------------------------------------------------------------------------------------1.00------------
.................................................................................................................................................................................................................CGGAGTCGGGAGAGCCGG........................................................................................................................................................................................1811.001.00---1.00---------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TCGGGAGAGCCGGAGAC....................................................................................................................................................................................171.000.00-----------------------------------------------------------------------------------------1.00-------
..................................................................................................................................................................................................................................................................................................................................................................................................TCCCAACATGGACAAACCACGC...2211.001.00----------------------------------------1.00--------------------------------------------------------
................................................................................................................................................................................................................GCGGAGTCGGGAGAGCCGGA.......................................................................................................................................................................................2011.001.00------------------------------------------------------------------------------1.00------------------
........................................................................................................................................................................................................................................................................................................................................................................GAATAACTGTGCTTGAAGAAGAAAAT.........................2611.001.00----------------------------------------------------------------------1.00--------------------------
........................................................................................................................................................................................................................................CTCTGGGAAAGCGCAAGGT................................................................................................................................................................1911.001.00-----1.00-------------------------------------------------------------------------------------------
...........................................................................................................................................GCGAGGCCTGTAGCAAAGCCTGCTGGGAAA..................................................................................................................................................................................................................................................3011.001.00------1.00------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................CGGAGAGCCTCTGGGAAAGCGCAAGGTTGAGGAC.........................................................................................................................................................3411.001.00------1.00------------------------------------------------------------------------------------------
.....................................................................................................................................................................................CGGGAAGGAGGGGGCGACCGGGAA..............................................................................................................................................................................................................2411.001.00---------------1.00---------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................AGGTTGAGGACCTGGCCC..................................................................................................................................................1811.001.00-------------------1.00-----------------------------------------------------------------------------
.................................................................................................................................................................................................................CGGAGTCGGGAGAGCCGGAGA.....................................................................................................................................................................................2111.001.00-----------------------------------------------1.00-------------------------------------------------
......................................................................................................................................................................................................................TCGGGAGAGCCGGAGAGC...................................................................................................................................................................................1811.001.00------------------------------------------------------------------------------------------1.00------
...............................................................................................................................................................................................................................................................................CAGGAAAAGGCAGGTATTG.........................................................................................................................1911.001.00--------------------------------------------------------------------------1.00----------------------
.GAGGACGACTAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................1511.001.00-------------1.00-----------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................GTATTCTGACTCTATTCTGC...................................................................2020.500.50---------------------------------------------------------------------------------------------0.50---
......................................GTCAGGGAAGGGGTACG....................................................................................................................................................................................................................................................................................................................................................................1720.500.50--------------------------------------------------------------------------------------------0.50----
..............................................................................................................................................................................................................................GCCGGAGAGCCTCTGGG............................................................................................................................................................................1720.500.50-------------------------------------------------------------------------------------------0.50-----
.....................................................................................................................................................TAGCAAAGCCTGCTGG......................................................................................................................................................................................................................................................1630.330.33--------------------------0.33----------------------------------------------------------------------
................................................................................................................................................................................................GGGCGACCGGGAAGC............................................................................................................................................................................................................1530.330.33------0.33------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................TGTGCTTGAAGAAGAAA...........................1740.250.25----------------------------------------------------------------------------------------------0.25--

Antisense strand
AGAGGACGACTAGGAGCACACGGCCCGGAAAGGTCCAGGTCAGGGAAGGGGTACGCAGTGGGCCGGGACTGGGGCGCGAGGGTGGACGCCGAAAGGCATGGAGTCTGCAGGCCGCACTGTCCCGCCCCTGTCACTGCGGGCGAGGCCTGTAGCAAAGCCTGCTGGGAAAATGGTGGGCTTTCGGGAAGGAGGGGGCGACCGGGAAGCGGCGGAGTCGGGAGAGCCGGAGAGCCTCTGGGAAAGCGCAAGGTTGAGGACCTGGCCCCCGAATCAGGAAAAGGCAGGTATTGGAACCCACGGCCTGGGTGTTAGTCCAGCCGCTTAGTATTCTGACTCTATTCTGCCTTTCTTGTCTCCTAAGAATAACTGTGCTTGAAGAAGAAAATTCCCAACATGGACAAACCACGCAAA
.................................................................................................................................................................................................................................................................................................(((.....(((.(((((......)))))))).((((....)))).....................)))......................................................
...............................................................................................................................................................................................................................................................................................288......................................................................361................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189782TAX577580(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038861(GSM458544)
MM466. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040011(GSM532896)
G529T. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR040036(GSM532921)
G243N. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR037931(GSM510469)
293GFP. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		SRR040025(GSM532910)
G613T. (cervix)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037938(GSM510476)
293Red. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040032(GSM532917)
G603N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038862(GSM458545)
MM472. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040015(GSM532900)
G623T. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM532887(GSM532887)
G761N. (cervix)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
........................................................................................AGACTCCATGCCTTTCGG................................................................................................................................................................................................................................................................................................................. 1815.005.005.00------------------------------------------------------------------------------------------------
..........................................................................CGCGAGGGTGGACGCCGG............................................................................................................................................................................................................................................................................................................................... 182.000.00-----------------1.00---------------------------------------------------1.00---------------------------
......................................CGGCCCACTGCGTACCCCTTCCCTGAC.......................................................................................................................................................................................................................................................................................................................................................... 2712.002.00-----------------------2.00-------------------------------------------------------------------------
....................................................................................................AGTGCGGCCTGCAGACTC..................................................................................................................................................................................................................................................................................................... 1811.001.001.00------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................ATACTAAGCGGCTGGACTAACA................................................................................... 2211.001.00-----------------------------1.00-------------------------------------------------------------------
.....................................................................................................................GCAGTGACAGGGGCGGGACA.................................................................................................................................................................................................................................................................................. 2011.001.00---------------------------------------------------------------------------------1.00---------------
...................................................................................................GTGCGGCCTGCAGACTCC...................................................................................................................................................................................................................................................................................................... 1811.001.00---1.00---------------------------------------------------------------------------------------------
..........................................................................CGCGAGGGTGGACGCCGGGC............................................................................................................................................................................................................................................................................................................................. 201.000.00------------------------1.00------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................ACAAGAAAGGCAGAATAGAG.......................................................... 2011.001.00-1.00-----------------------------------------------------------------------------------------------
......................................................................................CGGCCTGCAGACTCCATGCCTTTCGGCG......................................................................................................................................................................................................................................................................................................... 2811.001.00-----------------1.00-------------------------------------------------------------------------------
......................................................................................................................GTCCCGCCCCTGTCAGTG................................................................................................................................................................................................................................................................................... 181.000.00----------------1.00--------------------------------------------------------------------------------
..................................................................................................TGCGGCCTGCAGACTCCA....................................................................................................................................................................................................................................................................................................... 1811.001.00---1.00---------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................GGTTCCAATACCTGCC.................................................................................................................... 1611.001.00-------------------------1.00-----------------------------------------------------------------------
.................................................................................................GCGGCCTGCAGACTCCAT........................................................................................................................................................................................................................................................................................................ 1811.001.00-------------------------------------------1.00-----------------------------------------------------
...................................................CCAGTCCCGGCCCACTGCGTA................................................................................................................................................................................................................................................................................................................................................... 2111.001.00------------1.00------------------------------------------------------------------------------------
........................TGACCTGGACCTTTCCGG................................................................................................................................................................................................................................................................................................................................................................................. 1811.001.00----------------------------------------------1.00--------------------------------------------------
....................................AGGTCAGGGAAGGGGTCAAC................................................................................................................................................................................................................................................................................................................................................................... 201.000.00-----------------------------------------------------------------------1.00-------------------------
...............................................................................................GCGGCCTGCAGACTCCATGC........................................................................................................................................................................................................................................................................................................ 2011.001.00-----1.00-------------------------------------------------------------------------------------------
..........................................................................CGCGAGGGTGGACGCCGGGG............................................................................................................................................................................................................................................................................................................................. 201.000.00-------------------------------------1.00-----------------------------------------------------------
..........................................................................CGGCGTCCACCCTCGCG................................................................................................................................................................................................................................................................................................................................ 1711.001.00-------------1.00-----------------------------------------------------------------------------------
..........................................................................CGCGAGGGTGGACGCCG................................................................................................................................................................................................................................................................................................................................ 171.000.00--------------------------------------------------------------------------------------1.00----------
...................................................................................................TGCGGCCTGCAGACTCC....................................................................................................................................................................................................................................................................................................... 1711.001.00-----1.00-------------------------------------------------------------------------------------------
..........................................................................CGCGAGGGTGGACGCCGGG.............................................................................................................................................................................................................................................................................................................................. 191.000.00-----------------------------------------------------------------------------1.00-------------------
............................AAAGGTCCAGGTCAGTCAG............................................................................................................................................................................................................................................................................................................................................................................ 191.000.00----------1.00--------------------------------------------------------------------------------------
.................................................................................................................AGGGGCGGGACAGTGC.......................................................................................................................................................................................................................................................................................... 1611.001.00---------------------------------------------1.00---------------------------------------------------
.........................................................................TTTCGGCGTCCACCCTCGCGC............................................................................................................................................................................................................................................................................................................................. 2111.001.00-------------------------------------------------------1.00-----------------------------------------
..............................................CCGGCCCACTGCGTACCCCT......................................................................................................................................................................................................................................................................................................................................................... 2011.001.00------------------1.00------------------------------------------------------------------------------
.................................................................................................AGTGCGGCCTGCAGACTCCAT..................................................................................................................................................................................................................................................................................................... 2111.001.00------------1.00------------------------------------------------------------------------------------
................................................................................GCCTTTCGGCGTCCACC.......................................................................................................................................................................................................................................................................................................................... 1711.001.00---1.00---------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................ACTAAGCGGCTGGACTAACACC..................................................................................... 2211.001.00---------------------------------------1.00---------------------------------------------------------
....................................................................................................................TGACAGGGGCGGGACAG...................................................................................................................................................................................................................................................................................... 1711.001.00----------------------------1.00--------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................AGGCAGAATAGAGTCAGAA................................................................. 1921.001.00-1.00-----------------------------------------------------------------------------------------------
..........................................................................CGCGAGGGTGGACGCCGGG.............................................................................................................................................................................................................................................................................................................................. 191.000.00----------------------------------------------------------------------------------------1.00--------
............................................................................ACTCCATGCCTTTCGGCGTCCACCCTCG................................................................................................................................................................................................................................................................................................................... 2811.001.00----------------------------------------------------------------1.00--------------------------------
.............................................................GCCGGGACTGGGGCGGA............................................................................................................................................................................................................................................................................................................................................. 171.000.00------------------------------------1.00------------------------------------------------------------
.................................................................................................ATGGAGTCTGCAGGCCGCA....................................................................................................................................................................................................................................................................................................... 191.000.00---------1.00---------------------------------------------------------------------------------------
.......................................................................................................ACAGGGGCGGGACAGTGCGGCCTGCAGA........................................................................................................................................................................................................................................................................................ 2811.001.00-1.00-----------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................GAGTCAGAATACTAAGCGGCT........................................................................... 2111.001.00---------------------1.00---------------------------------------------------------------------------
........................................................................................................CAGTGCGGCCTGCAG.................................................................................................................................................................................................................................................................................................... 1540.250.25-----------------------------------------------------------------------------------------------0.25-
...................................................................................................................................................................................................................................................................................................................................................GAGACAAGAAAGGCAGA....................................................... 1760.170.17------------------------------------------------------------------------------------------------0.17