ID: uc004ekc.1_intron_1_0_chrX_102585969_f
GENE: (2)
chrX:102585919-102586354+


(1)
AGO2.ip
(8)
B-CELL
(5)
BRAIN
(14)
BREAST
(23)
CELL-LINE
(5)
CERVIX
(2)
HEART
(6)
OTHER
(7)
SKIN
(4)
UTERUS

Sense strand
GTTCACAGACATCTGGGGGAAGAAAAGGAGCAGGAAACTACCCCGCACAGGTCAGTATGAGAGAGGCACTTAGACTGAGATCTCTGAGGATAGGAGTCGGGAAGGGGCAAAAGCTAGGCGAAATTTGCGGCTTCGCAGTCCATCTCCTTTTCTGCTCCGCCTCTCCTGCCTATTGGAGAGGCCATTAGCTTTGTCTGCTGGGGAAACGGTGGGTTCCTGAGGTGGGAGGGGAGAAAAGGGGGAGATGAGAGGGTGGAGGGAACTGCCGCAGACTTATGAGGTCTGGACCTGTGGGGCAGAGATGGGAAAGTATCTTGCCTCAGAGAGAAACTGACAATCGTGATTCAAAAGTAATGAAGCAATTTGTCTTTACATTTTCTCCCTAGAGTTAAGCAGGAAACAACAACAACATCATGCAAAAACCCTGCAAAGAAAA
....................................................................((((((........))))))....(((((.(((((((((.....(((..(((((.........))))))))....))))))))).)))))((((((((........))))))))..(((((.......)))))...........................................................................................................................................................................................................................................
....................................................................69..........................................................................................................................................209.................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR038857(GSM458540)
D20. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR038861(GSM458544)
MM466. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
TAX577739(Rovira)
total RNA. (breast)
TAX577580(Rovira)
total RNA. (breast)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040012(GSM532897)
G648N. (cervix)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
TAX577746(Rovira)
total RNA. (breast)
SRR189787SRR040028(GSM532913)
G026N. (cervix)
SRR189783GSM339995(GSM339995)
hues6NP. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR189785SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM339994(GSM339994)
hues6. (cell line)
SRR038854(GSM458537)
MM653. (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR191634(GSM715744)
98genomic small RNA (size selected RNA from t. (breast)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786SRR040032(GSM532917)
G603N. (cervix)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
TAX577453(Rovira)
total RNA. (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
..........................................................................................................................................................................................AGCTTTGTCTGCTGGGTTT.......................................................................................................................................................................................................................................1966.000.0013.0011.00-3.002.00-3.002.005.003.003.005.00-2.00-3.00-3.001.00--1.00-------1.001.00-------1.00---1.001.00---1.00--------------------------
..........................................................................................................................................................................................AGCTTTGTCTGCTGGGTTTC......................................................................................................................................................................................................................................2046.000.0022.00-4.003.00--1.001.002.002.00---2.002.00-3.00----------1.00----------------------1.00-----1.00--------1.00--------
..........................................................................................................................................................................................AGCTTTGTCTGCTGGGTTTT......................................................................................................................................................................................................................................2011.000.00-3.00--2.00--2.00--1.00---------2.00-----------------------1.00-----------------------------
..........................................................................................................................................................................................AGCTTTGTCTGCTGGGTT........................................................................................................................................................................................................................................1811.000.00-2.00-3.00------1.00-------1.001.00--------1.00-----------------------1.00---------1.00-----------
.........................................................................ACTGAGATCTCTGAGATGT........................................................................................................................................................................................................................................................................................................................................................198.000.00-----8.00--------------------------------------------------------------------
..........................................................................................................................................................................................AGCTTTGTCTGCTGGGTTTA......................................................................................................................................................................................................................................206.000.00--1.00-4.00--------------1.00------------------------------------------------------
...........................................................................................................................................................................................GCTTTGTCTGCTGGGTTT.......................................................................................................................................................................................................................................184.000.00------4.00-------------------------------------------------------------------
..........................................................................................................................................................................................AGCTTTGTCTGCTGGGTTA.......................................................................................................................................................................................................................................193.000.00------------3.00-------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................TCTTGCCTCAGAGAGGGCA.........................................................................................................192.000.00--1.00---------------------------------------------1.00-------------------------
........................................................................................................................................................................................................................................................................................................................TCTTGCCTCAGAGAGTGCA.........................................................................................................192.000.00--2.00-----------------------------------------------------------------------
.........................................................................................................................................................................................................................................................AGGGTGGAGGGAACTAAA.........................................................................................................................................................................181.000.00--1.00-----------------------------------------------------------------------
..........................................................................................................................................................................................AGCTTTGTCTGCTGGGTCTC......................................................................................................................................................................................................................................201.000.00--------------1.00-----------------------------------------------------------
..........................................................................................................................................................................................AGCTTTGTCTGCTGGTTTT.......................................................................................................................................................................................................................................191.000.00-------1.00------------------------------------------------------------------
.......................................................................AGACTGAGATCTCTGAGATT.........................................................................................................................................................................................................................................................................................................................................................201.000.00---------------------------------------------------------------1.00----------
..........................................................................................................................................................................................AGCTTTGTCTGCTGGGTTTG......................................................................................................................................................................................................................................201.000.00---------1.00----------------------------------------------------------------
................................................................................................................................................................................................GTCTGCTGGGGAAACTCTG.................................................................................................................................................................................................................................191.000.00------------------------------------------------------------1.00-------------
..............................................................................................................................................................................................................................................................................................................................................................................TCTTTACATTTTCTCCTTTC..................................................201.000.00----------------------------------------------------------------1.00---------
.........................................................................................................................................................................................................................TGAGGTGGGAGGGGATAT.........................................................................................................................................................................................................181.000.00-------------------------------------1.00------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................TACATTTTCTCCCTATTA................................................181.000.00-----------------------1.00--------------------------------------------------
..........................................................................................................................................................................................AGCTTTGTCTGCTGGGTTGT......................................................................................................................................................................................................................................201.000.00-------1.00------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................AGAGAGAAACTGACAAAGCC...............................................................................................201.000.00-----------------------------------1.00--------------------------------------
.................................................................................................................................................................................................................................GAGGGGAGAAAAGGGGGT.................................................................................................................................................................................................181.000.00-------------------------------------------------------1.00------------------
..........................................................................................................................................................................................AGCTTTGTCTGCTGGGTTAT......................................................................................................................................................................................................................................201.000.00---------------------1.00----------------------------------------------------
................................................................................................................................................................................................................................................................AGGGAACTGCCGCAGAGTCC................................................................................................................................................................201.000.00---------------------------------------------1.00----------------------------
...............................AGGAAACTACCCCGCT.....................................................................................................................................................................................................................................................................................................................................................................................................161.000.00---------------------------------1.00----------------------------------------
....................................................................CTTAGACTGAGATCTCTGAG............................................................................................................................................................................................................................................................................................................................................................2011.001.00-----------------------------------------1.00--------------------------------
.........................................................................................................................................................................................................................................AAAAGGGGGAGATGAGCA.........................................................................................................................................................................................181.000.00----------------------------------------------------------1.00---------------
.......................................................................AGACTGAGATCTCTGA.............................................................................................................................................................................................................................................................................................................................................................1680.250.25------------------------------------------------------------------------0.120.12

Antisense strand
GTTCACAGACATCTGGGGGAAGAAAAGGAGCAGGAAACTACCCCGCACAGGTCAGTATGAGAGAGGCACTTAGACTGAGATCTCTGAGGATAGGAGTCGGGAAGGGGCAAAAGCTAGGCGAAATTTGCGGCTTCGCAGTCCATCTCCTTTTCTGCTCCGCCTCTCCTGCCTATTGGAGAGGCCATTAGCTTTGTCTGCTGGGGAAACGGTGGGTTCCTGAGGTGGGAGGGGAGAAAAGGGGGAGATGAGAGGGTGGAGGGAACTGCCGCAGACTTATGAGGTCTGGACCTGTGGGGCAGAGATGGGAAAGTATCTTGCCTCAGAGAGAAACTGACAATCGTGATTCAAAAGTAATGAAGCAATTTGTCTTTACATTTTCTCCCTAGAGTTAAGCAGGAAACAACAACAACATCATGCAAAAACCCTGCAAAGAAAA
....................................................................((((((........))))))....(((((.(((((((((.....(((..(((((.........))))))))....))))))))).)))))((((((((........))))))))..(((((.......)))))...........................................................................................................................................................................................................................................
....................................................................69..........................................................................................................................................209.................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR038857(GSM458540)
D20. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR038861(GSM458544)
MM466. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
TAX577739(Rovira)
total RNA. (breast)
TAX577580(Rovira)
total RNA. (breast)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040012(GSM532897)
G648N. (cervix)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
TAX577746(Rovira)
total RNA. (breast)
SRR189787SRR040028(GSM532913)
G026N. (cervix)
SRR189783GSM339995(GSM339995)
hues6NP. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR189785SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM339994(GSM339994)
hues6. (cell line)
SRR038854(GSM458537)
MM653. (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR191634(GSM715744)
98genomic small RNA (size selected RNA from t. (breast)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786SRR040032(GSM532917)
G603N. (cervix)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
TAX577453(Rovira)
total RNA. (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
.......................................................................................................................................AGAAAAGGAGATGGACTG........................................................................................................................................................................................................................................................................................... 1825.505.50------------1.50-----0.50-----0.50-----------------------------------------0.500.500.500.500.500.50--
..............................................................................................................................................GCGGAGCAGAAAAGGAGA.................................................................................................................................................................................................................................................................................... 1811.001.00--------------------------------1.00-----------------------------------------
............................................................................................................................................................................................................................................AGGGGGAGATGAGAGCCTG..................................................................................................................................................................................... 191.000.00----------------------------------------1.00---------------------------------
..................................................................................................................................................AGAGGCGGAGCAGAAAAG................................................................................................................................................................................................................................................................................ 1811.001.00----------------------------------1.00---------------------------------------
.................................................................................................................................................................................................................................GAGGGGAGAAAAGGGGCCC................................................................................................................................................................................................ 191.000.00-------------------------------------------------1.00------------------------
.............................................................................................................................................................................................................................................................................................................................................................AGTAATGAAGCAATTAAAA.................................................................... 191.000.00-----------------------------------------------------------1.00--------------
.............................................................................................................................AGAAAAGGAGATGGACTGCGAAGCCGCA........................................................................................................................................................................................................................................................................................... 2811.001.00----------------------------------------------1.00---------------------------
..................................................................................................................................................................................................................................................................GGAACTGCCGCAGACTCC................................................................................................................................................................ 181.000.00--------------------------1.00-----------------------------------------------
......................................................................................................................................GGAGAGGCGGAGCAGAAAAGGAGATGGACTGC.............................................................................................................................................................................................................................................................................. 3211.001.00-----------------------------------------------------1.00--------------------
......................................................................................................................................................TCTGCTCCGCCTCTCCTG............................................................................................................................................................................................................................................................................ 181.000.00----------------------1.00---------------------------------------------------
...........................................................................................................................................................................................................................................................................................TGGACCTGTGGGGCAAAA....................................................................................................................................... 181.000.00-------------------------------1.00------------------------------------------
.............................................................................................................................................................................................................................GTGGGAGGGGAGAAAGATC.................................................................................................................................................................................................... 191.000.00--1.00-----------------------------------------------------------------------
.......................................................................................................................................CAGTCCATCTCCTTTTCA........................................................................................................................................................................................................................................................................................... 181.000.00---------------------------------------1.00----------------------------------
......................................................................................................................................CAGAAAAGGAGATGGACTGC.......................................................................................................................................................................................................................................................................................... 2011.001.00------------------------------------------------------1.00-------------------
.............................................................................................................................................AGGCGGAGCAGAAAAGGAGAT.................................................................................................................................................................................................................................................................................. 2111.001.00---------------------------------------------------1.00----------------------
.............................................................................................................................AGATGGACTGCGAAGCCGCA................................................................................................................................................................................................................................................................................................... 2011.001.00-------------------------------------------------------------1.00------------
.......................................................................................................................ATGGACTGCGAAGCCGCAAATTTC..................................................................................................................................................................................................................................................................................................... 2411.001.00------------------------------------1.00-------------------------------------
...............................................................................................................................................GAGGCGGAGCAGAAAAGGAG................................................................................................................................................................................................................................................................................. 2011.001.00----------------------1.00---------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................TACATTTTCTCCCTAGACTGA............................................. 211.000.00---------------------------------------------------------1.00----------------
..................................................................................................................................................................................................................................AGGGGAGAAAAGGGGTAAG............................................................................................................................................................................................... 191.000.00-----------------------1.00--------------------------------------------------
............................................................................................................AAATTTCGCCTAGCTTTT...................................................................................................................................................................................................................................................................................................................... 1811.001.00-------------------------1.00------------------------------------------------
.....................................................................................................................................................AGGAGAGGCGGAGCAGAA............................................................................................................................................................................................................................................................................. 1811.001.00------------------------1.00-------------------------------------------------