ID: uc004eiy.3_intron_21_0_chrX_101693596_r.5p
GENE: (1)
chrX:101694591-101694840-


(2)
AGO2.ip 		(2)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(26)
CELL-LINE 		(1)
OTHER 		(1)
RRP40.ip 		(5)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CTGAGGGGAAGTGTAGCTCCCAGGTTGGTTCCAAGTCTTCTTCCAATTAGGTAAATTACAACAATATCTTTTCCATAAATTTCCTTTCTTTTCTTTTTTGCCTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTTTGGCTCTTGTTGCCCAGGCTGGGGCGTAATGTCGCGATCTCGGCTCACCACAACCCCCACCTCCCGGGTTCAAGCGATTCTCCTGCCTCACTCCCAAGTACCTGGGATTACAGG
............................................................................................................................((((.((..(((((((......(((((......)))))....)))).)))..)).))))....(((((.........)))))............................................
..................................................................................................................115..........................................................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR029127(GSM416756)
A549. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
............................................................................................................................................................................................................TTCAAGCGATTCTCCTGCCTCACTCCCCAG................304.000.002.00----2.00-------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTTTCGG............................................................................................................................284.000.004.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTCCCC.............................................................................................................................283.000.003.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTAAGC.............................................................................................................................282.000.002.00------------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTTTTCCC...........................................................................................................................292.000.002.00------------------------------------------
.......................................................................................................................TTTTTTGAGACGGAGTTTAGA..............................................................................................................212.000.00--------------2.00----------------------------
...............................................................................................TTTTGCCTTTTTTTTTTTTTTTCGG..................................................................................................................................252.000.00-2.00-----------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTTCTGG............................................................................................................................292.000.002.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTTCC..............................................................................................................................272.000.002.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTCTGC...............................................................................................................................262.000.002.00------------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTCTGC.............................................................................................................................272.000.002.00------------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTCGGG.............................................................................................................................272.000.002.00------------------------------------------
.........................................................................................................................................................................................ACAACCCCCACCTCCCGGGTTCAGGCG......................................272.000.00-2.00-----------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTTTCTGG...........................................................................................................................292.000.002.00------------------------------------------
....................................................................................................................................................................................TCACCACAACCCCCACCTCCCGGC..............................................242.000.002.00------------------------------------------
............................................................................................................................................................................................ACCCCCACCTCCCGGGTTCAGGCG......................................242.000.002.00------------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTTTTCGG...........................................................................................................................292.000.002.00------------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTTTCGGC...........................................................................................................................292.000.002.00------------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTTTTCCTT..........................................................................................................................302.000.002.00------------------------------------------
................................................................................................................................................................................................................AGCGATTCTCCTGCCTCACTCCCCTG................262.000.00-2.00-----------------------------------------
.............................................................................AATTTCCTTTCTTTTCTTACAG.......................................................................................................................................................221.000.00----1.00--------------------------------------
................................................................................................................................................................................................................AGCGATTCTCCTGCCTCACTGGG...................231.000.001.00------------------------------------------
...............................................................................................TTTTGCCTTTTTTTTTTTTTTTTTTATCC..............................................................................................................................291.000.00-1.00-----------------------------------------
..............................................................................................TTTTTGCCTTTTTTTTTTTTTTTTTTTTGTG.............................................................................................................................311.000.001.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTCG...............................................................................................................................261.000.001.00------------------------------------------
...............................................................................................TTTTGCCTTTTTTTTTTTTTTTTTTTAAG..............................................................................................................................291.000.001.00------------------------------------------
....................................................................................................CCTTTTTTTTTTTTTTTTTTTTTTTGATTTT.......................................................................................................................311.000.00------------------------------1.00------------
.............................................................................................TTTTTTGCCTTTTTTTTTTTTTTTTTTGG................................................................................................................................291.000.00-1.00-----------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTATTT...............................................................................................................................261.000.001.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTTCCC.............................................................................................................................281.000.001.00------------------------------------------
.............................................................................................TTTTTTGCCTTTTTTTTTTTTTTTTTTTTGG..............................................................................................................................311.000.001.00------------------------------------------
....................................................................................................................................................................................................CTCCCGGGTTCAAGCGATTCTCCTGCCTCGGC......................321.000.00------------------------1.00------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTCTC................................................................................................................................251.000.001.00------------------------------------------
......................................................................................................................................TTTGGCTCTTGTTGCCCAGGCTGGCGC.........................................................................................271.000.001.00------------------------------------------
...................................................................................................GCCTTTTTTTTTTTTTTTTTTTTTCGGG...........................................................................................................................281.000.001.00------------------------------------------
...................................................................................................GCCTTTTTTTTTTTTTTTTTTTTTCTGC...........................................................................................................................281.000.00-1.00-----------------------------------------
...................................................................................................GCCTTTTTTTTTTTTTTTTTTTTTTTGAATCG.......................................................................................................................321.000.00----1.00--------------------------------------
............................................................................................................................................................................................................TTCAAGCGATTCTCCTGCCTCACTCCCCCAG...............311.000.00-----1.00-------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTCCCG.................................................................................................................................231.000.001.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTCGCT...............................................................................................................................261.000.001.00------------------------------------------
.................................................................................TCCTTTCTTTTCTTTTTTAATG...................................................................................................................................................221.000.00-----------------1.00-------------------------
......................................................................................................................................................................................ACCACAACCCCCACCTCCAGGA..............................................221.000.00-------------1.00-----------------------------
...............................................................................................TTTTGCCTTTTTTTTTTTTTTTTTTTCC...............................................................................................................................281.000.001.00------------------------------------------
..........................................................................................TTCTTTTTTGCCTTTTTTTTTTTTTTTTG...................................................................................................................................291.000.001.00------------------------------------------
................................................................................................TTTGCCTTTTTTTTTTTTTTTTTTTTCC..............................................................................................................................281.000.001.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTGGG..............................................................................................................................271.000.001.00------------------------------------------
..............................................................................................................................................TTGTTGCCCAGGCTGGGGAGG.......................................................................................211.000.00-1.00-----------------------------------------
............................................................................................................................................................................ATCTCGGCTCACCACAACCCCCACCTCCCGGA..............................................321.000.001.00------------------------------------------
.............................................................................................TTTTTTGCCTTTTTTTTTTTTTTTTTTTGG...............................................................................................................................301.000.00-1.00-----------------------------------------
...............................................................................................TTTTGCCTTTTTTTTTTTTTTTTTTACC...............................................................................................................................281.000.001.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTAGC..............................................................................................................................271.000.001.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTTTTCGG...........................................................................................................................301.000.001.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTCGGG.................................................................................................................................241.000.00-1.00-----------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTCTCC.............................................................................................................................271.000.001.00------------------------------------------
............................................................................................................................................................................ATCTCGGCTCACCACAACCCCGCCC.....................................................251.000.001.00------------------------------------------
..............................................................................................TTTTTGCCTTTTTTTTTTTTTTCAGG..................................................................................................................................261.000.001.00------------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTATG..............................................................................................................................261.000.00-1.00-----------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTTTCCAG...........................................................................................................................291.000.001.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTTTCCC............................................................................................................................291.000.001.00------------------------------------------
........................................................................................................................................................................................................CGGGTTCAAGCGATTCTCCTGA............................221.000.00------------------1.00------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTCCCG.............................................................................................................................271.000.001.00------------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTCGG..................................................................................................................................221.000.001.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTGCT..............................................................................................................................271.000.001.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTCGGG.............................................................................................................................281.000.001.00------------------------------------------
........................................................................................................................TTTTTGAGACGGAGTTTGGCTCTTGCTG......................................................................................................281.000.00------1.00------------------------------------
......................................................................................................................................................................................................................TCTCCTGCCTCACTCCCAAGCAG.............231.000.001.00------------------------------------------
............................................................................................................................................................................................ACCCCCACCTCCCGGGTTCACGTG......................................241.000.001.00------------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTCGGG.................................................................................................................................231.000.001.00------------------------------------------
.............................................................................................TTTTTTGCCTTTTTTTTTTTTTTTTCCCG................................................................................................................................291.000.00-1.00-----------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTTCTGC............................................................................................................................291.000.00-1.00-----------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTTTTCCGG..........................................................................................................................311.000.001.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTCAAG.................................................................................................................................241.000.001.00------------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTTTCCCC...........................................................................................................................291.000.001.00------------------------------------------
..............................................................................................TTTTTGCCTTTTTTTTTTTTTTTTTCCG................................................................................................................................281.000.001.00------------------------------------------
................................................................................................TTTGCCTTTTTTTTTTTTTTTTTTTAAG..............................................................................................................................281.000.001.00------------------------------------------
................................................................................................TTTGCCTTTTTTTTTTTCTGG.....................................................................................................................................211.000.00-1.00-----------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTAAAA.............................................................................................................................271.000.001.00------------------------------------------
................................................................................................TTTGCCTTTTTTTTTTTTTTTGCTA.................................................................................................................................251.000.00-1.00-----------------------------------------
.............................................................................................TTTTTTGCCTTTTTTTTTTTTTTTTTGGG................................................................................................................................291.000.001.00------------------------------------------
..............................................................................ATTTCCTTTCTTTTCTTTTTTTTG....................................................................................................................................................241.000.00---------1.00---------------------------------
.....................................................................................................................................................................................................................................CCAAGTACCTGGGATTAC...1801.001.00------------1.00------------------------------
...........................................................................................................................................................................................AACCCCCACCTCCCGGGTTCAGGC.......................................241.000.00-1.00-----------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTGAT..............................................................................................................................271.000.001.00------------------------------------------
...............................................................................TTTCCTTTCTTTTCTTTTTTTCAG...................................................................................................................................................241.000.001.00------------------------------------------
.............................................................................AATTTCCTTTCTTTTCTTCCAG.......................................................................................................................................................221.000.00----1.00--------------------------------------
................................................................................................TTTGCCTTTTTTTTTTTTTTTTTCGGG...............................................................................................................................271.000.00-1.00-----------------------------------------
.............................................................................................................................................................................TCTCGGCTCACCACAACCCTGGG......................................................231.000.00-1.00-----------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTCAGG.................................................................................................................................241.000.001.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTCGC..............................................................................................................................271.000.00-1.00-----------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTTCTTC............................................................................................................................291.000.001.00------------------------------------------
.....................................................................................TTCTTTTCTTTTTTGCCTTTTTTTGC...........................................................................................................................................261.000.001.00------------------------------------------
.......................................................................................................................................................................................................CCGGGTTCAAGCGATTCTCCTGGT...........................241.000.00------1.00------------------------------------
..............................................................................ATTTCCTTTCTTTTCTTTTTGG......................................................................................................................................................221.000.001.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTCCCC...............................................................................................................................261.000.001.00------------------------------------------
............................................................................................................................................................................ATCTCGGCTCACCACAACCCCCTGGG....................................................261.000.001.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTTCGG.............................................................................................................................281.000.001.00------------------------------------------
...............................................................................TTTCCTTTCTTTTCTTTTTTTAAT...................................................................................................................................................241.000.00---------1.00---------------------------------
...............................................................................TTTCCTTTCTTTTCTTTAAC.......................................................................................................................................................201.000.00------1.00------------------------------------
.......................................................................................................................................................................TCGCGATCTCGGCTCTG..................................................................171.000.00--------------------------------------1.00----
...............................................................................................TTTTGCCTTTTTTTTTTTTTTTTTTTTC...............................................................................................................................281.000.00-1.00-----------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTCCAC.................................................................................................................................241.000.001.00------------------------------------------
....................................................................................................CCTTTTTTTTTTTTTTTTTTTTTTTGACCG........................................................................................................................301.000.00----------1.00--------------------------------
................................................................................................TTTGCCTTTTTTTTTTTTTTTTTAAAC...............................................................................................................................271.000.001.00------------------------------------------
...............................................................................................................................................TGTTGCCCAGGCTGGGGCGCAGC....................................................................................231.000.00---------------------1.00---------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTTTTCGTG..........................................................................................................................301.000.001.00------------------------------------------
...............................................................................TTTCCTTTCTTTTCTTTTACC......................................................................................................................................................211.000.001.00------------------------------------------
...............................................................................................................................................TGTTGCCCAGGCTGGGGCGTAGAG...................................................................................241.000.00-1.00-----------------------------------------
...............................................................................................TTTTGCCTTTTTTTTTTTTTTTTTCCCT...............................................................................................................................281.000.001.00------------------------------------------
...............................................................................................TTTTGCCTTTTTTTTTTTTTTTTCCG.................................................................................................................................261.000.00-1.00-----------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTCGC................................................................................................................................251.000.001.00------------------------------------------
................................................................................................TTTGCCTTTTTTTTTTTTTTTGGG..................................................................................................................................241.000.001.00------------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTAGTG.............................................................................................................................271.000.001.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTTGGTC............................................................................................................................291.000.001.00------------------------------------------
.........................................................................CATAAATTTCCTTTCTTTACA............................................................................................................................................................211.000.00----------1.00--------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTTCCCC............................................................................................................................291.000.001.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTTGTT.............................................................................................................................281.000.001.00------------------------------------------
.............................................................................................TTTTTTGCCTTTTTTTTTTTTTTCCGG..................................................................................................................................271.000.001.00------------------------------------------
................................................................................................TTTGCCTTTTTTTTTTTCGG......................................................................................................................................201.000.001.00------------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTCGGC.................................................................................................................................231.000.001.00------------------------------------------
............................................................................................................................................................................ATCTCGGCTCACCACAACCCCCACCGC...................................................271.000.001.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTTTTCCG...........................................................................................................................301.000.001.00------------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTTTTTGAGC.........................................................................................................................311.000.001.00------------------------------------------
.............................................................................................TTTTTTGCCTTTTTTTTTTCCC.......................................................................................................................................221.000.001.00------------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTTTTTGAGAGGG......................................................................................................................341.000.001.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTTCGGG............................................................................................................................291.000.001.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTCACC...............................................................................................................................261.000.001.00------------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTCGG..............................................................................................................................261.000.001.00------------------------------------------
....................................................................................TTTCTTTTCTTTTTTGCCG...................................................................................................................................................191.000.001.00------------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTCAAA.............................................................................................................................271.000.001.00------------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTCGC..............................................................................................................................261.000.001.00------------------------------------------
.............................................................................................................TTTTTTTTTTTTTTTTGAGACGGAGTTTAGCC.............................................................................................................321.000.00-1.00-----------------------------------------
................................................................................................TTTGCCTTTTTTTTTTTTTTTTTTTTCCGG............................................................................................................................301.000.001.00------------------------------------------
...............................................................................................................................................TGTTGCCCAGGCTGGGGCGCAC.....................................................................................221.000.00-1.00-----------------------------------------
.............................................................................................TTTTTTGCCTTTTTTTTTTTTTTTTTTGTC...............................................................................................................................301.000.001.00------------------------------------------
...................................................................................................GCCTTTTTTTTTTTTTTTTTTTTTTTGAGCCTT......................................................................................................................331.000.00---------1.00---------------------------------
...............................................................................................TTTTGCCTTTTTTTTTTTTTTTTTTTCAAG.............................................................................................................................301.000.00----1.00--------------------------------------
...............................................................................................TTTTGCCTTTTTTTTTTTTTTTTTAAGC...............................................................................................................................281.000.001.00------------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTTTCACC...........................................................................................................................291.000.001.00------------------------------------------
................................................................................................TTTGCCTTTTTTTTTTTTTTTGGCG.................................................................................................................................251.000.001.00------------------------------------------
....................................................................................................CCTTTTTTTTTTTTTTTTTTTTTTTGAACGG.......................................................................................................................311.000.001.00------------------------------------------
....................................................................................................CCTTTTTTTTTTTTTTTTTTTTTTTGAAAGC.......................................................................................................................311.000.001.00------------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTTTCGC............................................................................................................................281.000.001.00------------------------------------------
....................................................................................................................................................................................................................................CCCAAGTACCTGGGATTACAGGGAC251.000.00------1.00------------------------------------
....................................................................................................CCTTTTTTTTTTTTTTTTTTTTTTTGAATA........................................................................................................................301.000.00-----1.00-------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTTTCTGC...........................................................................................................................291.000.001.00------------------------------------------
................................................................................................TTTGCCTTTTTTTTTTTTTTTTTTTGAA..............................................................................................................................281.000.001.00------------------------------------------
.................................................................................................TTGCCTTTTTTTTTTTTTTTTTTTCTGG.............................................................................................................................281.000.001.00------------------------------------------
..................................................................................................TGCCTTTTTTTTTTTTTTTTTTTTTTTGTTTT........................................................................................................................321.000.001.00------------------------------------------
................................................................................................TTTGCCTTTTTTTTTTTTTTTTTTTTTCC.............................................................................................................................291.000.001.00------------------------------------------
..............................................................................ATTTCCTTTCTTTTCTTCCTC.......................................................................................................................................................211.000.00----1.00--------------------------------------
............................................................................................................................................................................................ACCCCCACCTCCCGGGTTCAAGCGACTCC.................................291.000.00-----1.00-------------------------------------
...............................................................................TTTCCTTTCTTTTCTTTTTTCAAG...................................................................................................................................................241.000.00-----------------1.00-------------------------
............................................................................................................................................................................ATCTCGGCTCACCACAACCCCCACCTCCCGGG..............................................3220.500.500.50------------------------------------------
............................................................................................................................................................................ATCTCGGCTCACCACAACCCCCACCTCCC.................................................2980.250.250.25------------------------------------------
.........................................................................................................................................................................................ACAACCCCCACCTCCCGGGTTCAAGCG......................................2750.200.200.20------------------------------------------
...................................................................................................................................................................AATGTCGCGATCTCGGCTCACC.................................................................2260.170.17---------------------------------------0.17---
...............................................................................TTTCCTTTCTTTTCTTTTTTG......................................................................................................................................................2170.140.14----0.14--------------------------------------
..............................................................................................................................................TTGTTGCCCAGGCTGGGGCG........................................................................................2080.120.12-----------------------------------------0.12-

Antisense strand
CTGAGGGGAAGTGTAGCTCCCAGGTTGGTTCCAAGTCTTCTTCCAATTAGGTAAATTACAACAATATCTTTTCCATAAATTTCCTTTCTTTTCTTTTTTGCCTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTTTGGCTCTTGTTGCCCAGGCTGGGGCGTAATGTCGCGATCTCGGCTCACCACAACCCCCACCTCCCGGGTTCAAGCGATTCTCCTGCCTCACTCCCAAGTACCTGGGATTACAGG
............................................................................................................................((((.((..(((((((......(((((......)))))....)))).)))..)).))))....(((((.........)))))............................................
..................................................................................................................115..........................................................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR029127(GSM416756)
A549. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................TTCTTCCAATTAGGTTAA................................................................................................................................................................................................... 1812.000.00---7.00---4.00------------------1.00----------------
......................................................................................................................................................................................................CCCGGGTTCAAGCGATTCTCCTGTAAT......................... 276.000.00--6.00----------------------------------------
.......................................................................................................................................................................................................CCGGGTTCAAGCGATTCTCCTGTAAT......................... 264.000.00--4.00----------------------------------------
.......................................................................................................................................................................................CCACAACCCCCACCTCCGT................................................ 192.000.00----------------1.00------------------1.00-------
......................AAGACTTGGAACCAACC................................................................................................................................................................................................................... 1702.002.00--------2.00----------------------------------
.......................................................................................................................................................................................CCACAACCCCCACCTCCGA................................................ 192.000.00----------------1.00------------1.00-------------
.......................................................................................................................................................................................................CCGGGTTCAAGCGATTCTCCTGTC........................... 242.000.00---------------2.00---------------------------
...............................................................................................TTTTGCCTTTTTTTTTTTTTTTTTTTTTTGGCC.......................................................................................................................... 331.000.00---------------------------------1.00---------
.............................................................................................................................................................................................CCCCCACCTCCCGGGTTCAAGCGATTCTCCTC............................. 321.000.00-1.00-----------------------------------------
.....................................................................................................................................................................................................................AGTGAGGCAGGAGAA...................... 1501.001.00-----------1.00-------------------------------
...................................................................................................................................................................................................................GATTCTCCTGCCTCACTACA................... 201.000.00----------------------------1.00--------------
...................................................................................................................................................................................CTCACCACAACCCCCTCT..................................................... 181.000.00--------------------1.00----------------------
......................................................................................................................................................................................................CCCGGGTTCAAGCGATTCTCCTTAA........................... 251.000.00------------------------------------1.00------
.........................................................................................................................................................................GTTGTGGTGAGCCGAGATCGC............................................................ 2101.001.00-------------------------------------1.00-----
.......................................................................................................................................................................................................................CTCCTGCCTCACTCCTAGT................ 191.000.00---------------------------1.00---------------
.......................................................................................................................................................................................................CCGGGTTCAAGCGATTCTCCTT............................. 221.000.00-----------1.00-------------------------------
.............................................................................................................................................................................TCTCGGCTCACCACAACAA.......................................................... 191.000.00-----------------------1.00-------------------
..................................................................................................................................................................................GCTCACCACAACCCCAGAG..................................................... 191.000.00----------------------------------1.00--------
........................................................................................................................................................................................................CGGGTTCAAGCGATTCTCCTGTTT.......................... 241.000.00-------------1.00-----------------------------
...............................................................................TTTCCTTTCTTTTCTTTTTCAGG.................................................................................................................................................... 231.000.00-------------------------1.00-----------------
............................................................................................................................................................................................CCGGGAGGTGGGGGT............................................... 1501.001.00------------1.00------------------------------
................................................................................................................................................................................................................AGCGATTCTCCTGCCTCACGGAA................... 231.000.00--------1.00----------------------------------
........................................................................................................................................................................................................CGGGTTCAAGCGATTCTCCTGCCTCATTT..................... 291.000.00--------------------------------1.00----------
............................................................................................................................................................................................CTTGAACCCGGGAGGTGGGGGT........................................ 2201.001.00-------------------------------1.00-----------
.............................................................................................................................................................................................CCCCCACCTCCCGGGTTCAAGCGACCGC................................. 281.000.001.00------------------------------------------
.....................................................................................................................................................................................CACCACAACCCCCACCTGGTA................................................ 211.000.00----------------------1.00--------------------
......................................................................................................................................................................................ACCACAACCCCCACCTCCATTT.............................................. 221.000.00-------------------1.00-----------------------
...................................................................................................................................CCCAGCCTGGGCAACAAGAGCCAAACTC........................................................................................... 2870.140.14----------------------------------------0.14--
....................................................................................................................................................................................CCCGGGAGGTGGGGGTTGTGGTGA.............................................. 2490.110.11------------------------------------------0.11