ID: uc004eda.2_intron_4_0_chrX_77393596_r.3p
GENE: (2)
chrX:77393546-77393795-


(5)
AGO2.ip 		(1)
BRAIN 		(3)
BREAST 		(21)
CELL-LINE 		(2)
CERVIX 		(2)
HEART 		(2)
LIVER 		(2)
OTHER 		(5)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CACCTGTAATCTCAGCACTTCGGGAGGCTGTCGCGGGGAGGCCAGGAGTTTCCTGGGCAACATAGCGAGACCCTGTCTCTACAAAAACCCACAAAATTTATAAACCGTCTACAAATTAGTGGAAAGTTTTATTAAGACAAGTAGCCATAAATATTAAGCTGTCTTCATATGTTTAAGAAAAGATTGTTTTGTTCTTATAGGTTATGTGACTACAATTCTGGATGATGCAAAAATTTATTCGAGCCATGCT
.....................................................((((.........(((((...)))))........))))..........((((..(((((......)))))..))))(((.(((((.(((...............)))))))).)))....((((((.(((....))).)))))).....................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925PAZD5GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
...................................................CCTGGGCAACATAGCGAGACC..................................................................................................................................................................................21025.0025.006.00--1.001.005.00-4.003.00-3.001.00--1.00------------------------
.....................................................TGGGCAACATAGCGAGACC..................................................................................................................................................................................19021.0021.005.00-5.003.003.001.00----1.002.00-----------------1.00---------
...................................................CCTGGGCAACATAGCGAGACCC.................................................................................................................................................................................22011.0011.001.00-1.00--1.005.00-2.00-----1.00------------------------
....................................................CTGGGCAACATAGCGAGACC..................................................................................................................................................................................2007.007.001.00-1.001.001.00-1.001.00--1.00----------------------------
.....................................................TGGGCAACATAGCGAGACCC.................................................................................................................................................................................2006.006.002.00-2.001.001.00----------------------------------
......................................................GGGCAACATAGCGAGACCC.................................................................................................................................................................................1903.003.002.00-------------1.00------------------------
.......AATCTCAGCACTTCGGGACAGC.............................................................................................................................................................................................................................222.000.00-2.00-------------------------------------
.........................................................CAACATAGCGAGACCCTGT..............................................................................................................................................................................1902.002.00------1.001.00-------------------------------
..................................................TCCTGGGCAACATAGCGAGACCCCGTC.............................................................................................................................................................................272.000.00---------2.00-----------------------------
..........................................................AACATAGCGAGACCCGGGC.............................................................................................................................................................................192.000.00------------------------1.001.00-------------
............................................................................................................................................................................................................TGTGACTACAATTCTGGATGATGCA.....................2521.501.50----------------0.50-0.500.50-------------------
...........................................................ACATAGCGAGACCCTGTCTCCACC.......................................................................................................................................................................241.000.00-1.00-------------------------------------
......................................AGGCCAGGAGTTTCCTGGCACA..............................................................................................................................................................................................221.000.00-------------1.00-------------------------
...........................................................ACATAGCGAGACCCTGTCTCTTAGA......................................................................................................................................................................251.000.00-1.00-------------------------------------
....................................................CTGGGCAACATAGCGAGACCC.................................................................................................................................................................................2101.001.00--------1.00------------------------------
.....................................................TGGGCAACATAGCGAGACCCGGA..............................................................................................................................................................................2301.006.00---------------------1.00-----------------
...........................................................ACATAGCGAGACCCTGTCTCTTGA.......................................................................................................................................................................241.000.00------------1.00--------------------------
..............................................................TAGCGAGACCCTGTCTCTTTCG......................................................................................................................................................................221.000.00------------1.00--------------------------
......................................................................................................................................................................................................AGGTTATGTGACTACAGTT.................................191.000.00--------------------------------1.00------
..........................................................AACATAGCGAGACCCTGTGCTC..........................................................................................................................................................................221.000.00-------------1.00-------------------------
........................................................................................................................................................................................................GTTATGTGACTACAATTCTGGATGATGCA.....................2911.001.00---------------1.00-----------------------
.............................................................ATAGCGAGACCCTGTCTCTTA........................................................................................................................................................................211.000.00--------------------1.00------------------
...............CACTTCGGGAGGCTGTAC.........................................................................................................................................................................................................................181.000.00-1.00-------------------------------------
..........CTCAGCACTTCGGGAGGCTCAA..........................................................................................................................................................................................................................221.000.00----------------------1.00----------------
...........TCAGCACTTCGGGAGGCAGGC..........................................................................................................................................................................................................................211.000.00-1.00-------------------------------------
.........................................................CAACATAGCGAGACCCTGTCTCCACC.......................................................................................................................................................................261.000.00-1.00-------------------------------------
.............................................................................................................................................................................TAAGAAAAGATTGTTTTGTTCT.......................................................2211.001.00------------------1.00--------------------
................ACTTCGGGAGGCTGTTGCC.......................................................................................................................................................................................................................191.000.00--------------------------1.00------------
........................................................GCAACATAGCGAGACCCTGTCCCAG.........................................................................................................................................................................251.000.00-1.00-------------------------------------
.............................................................ATAGCGAGACCCTGTCTCTT.........................................................................................................................................................................201.000.00----------------------------1.00----------
..............................................................TAGCGAGACCCTGTCTCCTT........................................................................................................................................................................201.000.00------------1.00--------------------------
............................................................CATAGCGAGACCCTGAAC............................................................................................................................................................................181.000.00-------------------------------1.00-------
...................................................CCTGGGCAACATAGCGAGACCGTTC..............................................................................................................................................................................2501.0025.00-1.00-------------------------------------
....................................................................................AAACCCACAAAATTTACCCT..................................................................................................................................................201.000.00---------1.00-----------------------------
...........................................................ACATAGCGAGACCCTG...............................................................................................................................................................................1601.001.00-----------1.00---------------------------
................................................................................................................AAATTAGTGGAAAGTGAC........................................................................................................................181.000.00-----------------------1.00---------------
...................................................CCTGGGCAACATAGCGAGACCCTGTCTCTTG........................................................................................................................................................................311.000.00----------------------------------1.00----
...................................................CCTGGGCAACATAGCGAGACCCGCAC.............................................................................................................................................................................2601.0011.00---------------------------1.00-----------
...........................................................................................................................................................................................................ATGTGACTACAATTCTGGATGATGC......................2520.500.50----------------0.50----------------------
..............................................................................................................................................................................................................TGACTACAATTCTGGATGATG.......................2120.500.50----------------0.50----------------------
...............................................................................................................................................................................................................GACTACAATTCTGGATGATGC......................2120.500.50----------------0.50----------------------
............................................................................................................................................................................................................TGTGACTACAATTCTGGATGA.........................2120.500.50--------------------------------------0.50
...................................................................................................................................................................................................................ACAATTCTGGATGATGCAAAAATT...............2420.500.50-------------------------------------0.50-
................................................................................................................................................................................................................ACTACAATTCTGGATGA.........................1720.500.50---0.50-----------------------------------
...........................................................................................................................................................................................................ATGTGACTACAATTCTGGATGATGCAAAA..................2920.500.50---------0.50-----------------------------
................................................................................................................................................................................................................ACTACAATTCTGGATGATGCAAAAATTTAT............3020.500.50-----------------------------------0.50---
..................................................TCCTGGGCAACATAGCGAGACCCTGTCTC...........................................................................................................................................................................2990.110.11-0.11-------------------------------------

Antisense strand
CACCTGTAATCTCAGCACTTCGGGAGGCTGTCGCGGGGAGGCCAGGAGTTTCCTGGGCAACATAGCGAGACCCTGTCTCTACAAAAACCCACAAAATTTATAAACCGTCTACAAATTAGTGGAAAGTTTTATTAAGACAAGTAGCCATAAATATTAAGCTGTCTTCATATGTTTAAGAAAAGATTGTTTTGTTCTTATAGGTTATGTGACTACAATTCTGGATGATGCAAAAATTTATTCGAGCCATGCT
.....................................................((((.........(((((...)))))........))))..........((((..(((((......)))))..))))(((.(((((.(((...............)))))))).)))....((((((.(((....))).)))))).....................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925PAZD5GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
........................................................ACAGGGTCTCGCTATGTTGC.............................................................................................................................................................................. 2003.003.00---1.00-------------2.00---------------------
....................................................................GACCCTGTCTCTACAACGGC.................................................................................................................................................................. 202.000.00-2.00-------------------------------------
...................................................................AGACCCTGTCTCTACAAAAGTCC................................................................................................................................................................ 232.000.00-2.00-------------------------------------
...................................................................AGACCCTGTCTCTACAAAAAGG................................................................................................................................................................. 221.000.00--1.00------------------------------------
.........................................................................................................................................................................................................TGCATCATCCAGAATTGTAGTCACATAA..................... 2811.001.00---------------1.00-----------------------
........................................................................................................................GGAAAGTTTTATTAAGATTC.............................................................................................................. 201.000.00---------1.00-----------------------------
..................................................................................AAAAACCCACAAAATTTATTTTT................................................................................................................................................. 231.000.00---------1.00-----------------------------
.......................................................................................................................................................................................................AGAATTGTAGTCACATAACC............................... 2011.001.00---------------1.00-----------------------
.....................................................................GTGGGTTTTTGTAGAGACAGGGT.............................................................................................................................................................. 2311.001.00------------------------------1.00--------
.................................................................CGAGACCCTGTCTCTACAATGTG.................................................................................................................................................................. 231.000.00-------------1.00-------------------------
...........................................................ACAGGGTCTCGCTATGT.............................................................................................................................................................................. 1701.001.00--1.00------------------------------------
....................................................CTGGGCAACATAGCGAGACCCTGTCTCTCTAG...................................................................................................................................................................... 321.000.00-1.00-------------------------------------
..............................................................................................................................................................................................................TGACTACAATTCTGGAGAGA........................ 201.000.00---------------------------------1.00-----
.......................................................ACAGGGTCTCGCTATGTTGCC.............................................................................................................................................................................. 2101.001.00----1.00----------------------------------
....................................................................GACCCTGTCTCTACAAAACGGC................................................................................................................................................................ 221.000.00-1.00-------------------------------------
...........................................................................................................................................................................................................CATCCAGAATTGTAGTCACAT.......................... 2120.500.50-------------------0.50-------------------
.................................................................................................................................................................................................................GCATCATCCAGAATTGTAG...................... 1920.500.50--0.50------------------------------------
......................................................................................................................................................................................................................CTCGAATAAATTTTTGCATCATCCAGAAT....... 2920.500.50------------------------------------0.50--
.....................................................................................................................................................................................................................TTTGCATCATCCAGAATT................... 1820.500.50-------------------0.50-------------------