ID: uc004ecp.3_intron_21_0_chrX_76909691_r.5p
GENE: (13)
chrX:76911850-76912099-


(1)
B-CELL 		(1)
BRAIN 		(5)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(2)
HELA 		(4)
LIVER 		(1)
OTHER 		(2)
RRP40.ip 		(5)
SKIN 		(1)
XRN.ip

Sense strand
GTTAGTGAAGAAGTTAGTGAATCCGAAGATGAACAGCGGCCCAGAACAAGGTATTATAATTGGTTTTTAAAAAATTTTAGGAATTAATCTGAATGACCATGCCTTCAAATGATTTATATGGTTACTGTTACCAATAAAGTTAAGTTAGTGTGATATATAATATTTTGATTTGAAACTAATTGTTATACTTAATAGTTTAAAAAGAATCTAAGCATATTTTATGTGTAGTTGAATTATGTATTCTAACCTG
......................................................................................................................................................................(((((......((((((((....))))))))......)))))..........................................
.............................................................................................................................................................158................................................209.......................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR040025(GSM532910)
G613T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
..........................................................................................................................................................................................ACTTAATAGTTTAAACTGT.............................................1920.000.0020.00------------------------
..........................................................................................................................................................................................ACTTAATAGTTTAAACTTT.............................................1919.000.0019.00------------------------
.........................................................................................................................................................................................TACTTAATAGTTTAAACTTT.............................................2013.000.0013.00------------------------
.........................................................................................................................................................................................TACTTAATAGTTTAAACTGT.............................................206.000.006.00------------------------
.................................CAGCGGCCCAGAACAAG........................................................................................................................................................................................................1715.005.00-3.00---1.00----------1.00--------
................GTGAATCCGAAGATGAACAGCGGCCCAGA.............................................................................................................................................................................................................2913.003.00--3.00----------------------
...........AGTTAGTGAATCCGAAGATGAACAGCGG...................................................................................................................................................................................................................2812.002.00-------2.00-----------------
..................................AGCGGCCCAGAACAAGGTCT....................................................................................................................................................................................................202.000.00--------1.00---------------1.00
..................................AGCGGCCCAGAACAAG........................................................................................................................................................................................................1612.002.00---1.00------------------1.00--
..............TAGTGAATCCGAAGATGAACAGC.....................................................................................................................................................................................................................2312.002.00------2.00------------------
...........AGTTAGTGAATCCGAAG..............................................................................................................................................................................................................................1711.001.00---------1.00---------------
...........................GATGAACAGCGGCCCAGAACAAGGTCTG...................................................................................................................................................................................................281.000.00-----1.00-------------------
.......................CGAAGATGAACAGCGGCGCA...............................................................................................................................................................................................................201.000.00-----------------------1.00-
........................................................................................................................................................................................ATACTTAATAGTTTAAACTGA.............................................211.000.001.00------------------------
..........................................................................................................................................................................................ACTTAATAGTTTAAACTAT.............................................191.000.001.00------------------------
................................ACAGCGGCCCAGAACAAG........................................................................................................................................................................................................1811.001.00-------------------1.00-----
.........................................................................................................................................................................................TACTTAATAGTTTAAACTTA.............................................201.000.001.00------------------------
..................................................................................................................................................................TTTTGATTTGAAACTGCG......................................................................181.000.00--------------1.00----------
.....................TCCGAAGATGAACAGCGGCCCAGAACAAG........................................................................................................................................................................................................2911.001.00---1.00---------------------
.............................TGAACAGCGGCCCAGAACAAG........................................................................................................................................................................................................2111.001.00------------------1.00------
.........................AAGATGAACAGCGGC..................................................................................................................................................................................................................1511.001.00----------1.00--------------
.........................AAGATGAACAGCGGCCCAG..............................................................................................................................................................................................................1911.001.00--------1.00----------------
................GTGAATCCGAAGATGAACAGCGGCC.................................................................................................................................................................................................................2511.001.00---------------------1.00---
..........................................................................................................................................................................................ACTTAATAGTTTAAACTCT.............................................191.000.001.00------------------------
.................................................................................AATTAATCTGAATGACACTG.....................................................................................................................................................201.000.00------------1.00------------
......................................................................................................................................................................................TTATACTTAATAGTTTAAACTGC.............................................231.000.001.00------------------------
....................ATCCGAAGATGAACAGCGGCCC................................................................................................................................................................................................................2211.001.00----1.00--------------------
...............AGTGAATCCGAAGATGAACAG......................................................................................................................................................................................................................2111.001.00-----------------1.00-------
........................GAAGATGAACAGCGGCCCAG..............................................................................................................................................................................................................2011.001.00----1.00--------------------
......................CCGAAGATGAACAGCGGCCCAGAACAA.........................................................................................................................................................................................................2711.001.00--------------------1.00----
......................CCGAAGATGAACAGCGGCCCAGAAC...........................................................................................................................................................................................................2511.001.00-----------1.00-------------
.......................CGAAGATGAACAGCGGCCCAGAACAAG........................................................................................................................................................................................................2711.001.00-------------1.00-----------
..........AAGTTAGTGAATCCGAAG..............................................................................................................................................................................................................................1811.001.00---------------1.00---------

Antisense strand
GTTAGTGAAGAAGTTAGTGAATCCGAAGATGAACAGCGGCCCAGAACAAGGTATTATAATTGGTTTTTAAAAAATTTTAGGAATTAATCTGAATGACCATGCCTTCAAATGATTTATATGGTTACTGTTACCAATAAAGTTAAGTTAGTGTGATATATAATATTTTGATTTGAAACTAATTGTTATACTTAATAGTTTAAAAAGAATCTAAGCATATTTTATGTGTAGTTGAATTATGTATTCTAACCTG
......................................................................................................................................................................(((((......((((((((....))))))))......)))))..........................................
.............................................................................................................................................................158................................................209.......................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR040025(GSM532910)
G613T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)