ID: uc004ebm.1_intron_2_0_chrX_73051110_r.3p
GENE: XIST(3)
chrX:73051060-73051309-


(1)
BREAST 		(10)
CELL-LINE 		(1)
CERVIX 		(2)
LIVER 		(1)
OTHER 		(2)
SKIN

Sense strand
GGAATGAATAGGATAATTTTTTTTTTTTTTGCTAAGTTGGTAGCCAGAATATAACAGCTCCGCACAACTGTAAATGTCCACTCTTCAATCCACATGAAGAAAAGGGTAAAAATATGGTTGAACTCAACCACTAGTTGCCCATTAGAACAGACTTTCCCAGTGTACTGCATTTCAATACTTTTTCTTTTATCTCTTTTCAGATCTTCCTCAGAAGAATAGGCTTGTTGTTTTACAGTGTTAGTGATCCATT
...............................................................((.((((..((.(((...((((((.......))))))...((((((.....((((((....))))))....)))))).........))).))..)))))).......................................................................................
...............................................................64..........................................................................................................................188............................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189787SRR189783SRR037937(GSM510475)
293cand2. (cell line)		SRR189784SRR189782SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		GSM532883(GSM532883)
G871N. (cervix)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTTCAG..................................................331233.00233.0079.0049.0067.0038.00-----------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTCCAG..................................................33124.000.0062.0058.001.00-3.00----------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTCAG...................................................3286.000.0031.0036.0012.007.00-----------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTCAG....................................................3147.000.008.006.0016.0017.00-----------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTTCA...................................................32125.0025.005.002.008.0010.00-----------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTCAG.....................................................3022.000.0013.008.00--1.00----------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTTCAA..................................................3319.0025.001.00-6.002.00-----------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTCCAG....................................................319.000.006.001.002.00------------------
.......................................................................................................................................................................CATTTCAATACTTTTTC..................................................................1747.507.503.502.75--1.25----------------
................................................................................................................................................................................ACTTTTTCTTTTATCTCTTTTCAG..................................................2415.005.004.001.00-------------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTTCAT..................................................3315.0025.003.00-1.001.00-----------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTTC....................................................3115.005.00-2.002.001.00-----------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTCAA...................................................324.000.001.001.001.001.00-----------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTTA....................................................3114.001.001.001.00-2.00-----------------
................................................................................................................................................................TGTACTGCATTTCAATACTTTTTC..................................................................2413.003.00----3.00----------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTCCAA..................................................333.000.001.002.00-------------------
........................................................................................................................................................................ATTTCAATACTTTTTCTTTTATCTCTTTTCAG..................................................3213.003.001.00--2.00-----------------
.......................................................................................................................................................................................................................ATAGGCTTGTTGTTTTACAGTGTTAGTGATCC...3213.003.00--------3.00------------
..................................................................................................................................................................TACTGCATTTCAATACTTTTCC..................................................................223.000.00----3.00----------------
............................................................................................................................................................................CAATACTTTTTCTTTTATCTCTTTTCAG..................................................2813.003.002.00-1.00------------------
.........................................................................................................................................................................TTTCAATACTTTTTCTTTTATCTCTTTTCAG..................................................3112.002.002.00--------------------
..................................................................................................................................................................TACTGCATTTCAATACTTTTTC..................................................................2212.002.00----2.00----------------
...............ATTTTTTTTTTTTTTGCTAAGCTGG..................................................................................................................................................................................................................252.000.00-----1.001.00--------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTAAA...................................................322.000.00--1.001.00-----------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTCCA...................................................322.000.001.001.00-------------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTCTTC....................................................312.000.001.00---1.00----------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTCCAT..................................................332.000.00-2.00-------------------
............................................................................................................................................................................CAATACTTTTTCTTTTATCTCTTTCCAG..................................................282.000.001.001.00-------------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTCAA....................................................312.000.001.00-1.00------------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTTCAG..........................................................252.000.002.00--------------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTCA....................................................312.000.001.00-1.00------------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTCAT...................................................322.000.001.00--1.00-----------------
.........................................................................................................................................................................TTTCAATACTTTTTCTTTTATCTCTTTCAG...................................................302.000.00-2.00-------------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTC.........................................................2612.002.00----2.00----------------
.........AGGATAATTTTTTTTTTTTTTGCC.........................................................................................................................................................................................................................2412.001.00------2.00--------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCCCAG.....................................................3012.002.002.00--------------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCAG.......................................................2812.002.002.00--------------------
............ATAATTTTTTTTTTTTTTGCCAAG......................................................................................................................................................................................................................241.000.00------1.00--------------
..............AATTTTTTTTTTTTTTGCGCCA......................................................................................................................................................................................................................221.000.00---------------1.00-----
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTCCC....................................................311.000.00-1.00-------------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTTCTTTG................................................3511.005.00---1.00-----------------
.......................TTTTTTTGCTAAGTTGGTAGCCAG...........................................................................................................................................................................................................2411.001.00-----1.00---------------
..............AATTTTTTTTTTTTTTGCGACC......................................................................................................................................................................................................................221.000.00-----1.00---------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTCAT.....................................................301.000.00-1.00-------------------
.........AGGATAATTTTTTTTTTTTTTGC..........................................................................................................................................................................................................................2311.001.00------1.00--------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTCCA....................................................311.000.00-1.00-------------------
..AATGAATAGGATAATTTTTTTTTTTT..............................................................................................................................................................................................................................2611.001.00------1.00--------------
.............................................................................................................................................................................AATACTTTTTCTTTTATCTCTTTTCAG..................................................2711.001.00---1.00-----------------
............................................................................................................................................................................CAATACTTTTTCTTTTTG............................................................181.000.00---1.00-----------------
.................................................................................................................................................................................CTTTTTCTTTTATCTCTTTCAG...................................................221.000.00-1.00-------------------
..AATGAATAGGATAATTTTTTTTT.................................................................................................................................................................................................................................2311.001.00----1.00----------------
..............AATTTTTTTTTTTTTTGCTAAGTCGG..................................................................................................................................................................................................................261.000.00-----1.00---------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTTAA...................................................3211.001.00--1.00------------------
........................TTTTTTGCTAAGTTGGTAGCCAG...........................................................................................................................................................................................................2311.001.00-----1.00---------------
.................................................................................................................................................................................................................AGAAGAATAGGCTTGTTTTAC....................211.000.00-----1.00---------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTCAAT..................................................331.000.00--1.00------------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTT.....................................................3011.001.00-1.00-------------------
.................................................................................................................................................................................CTTTTTCTTTTATCTCTAAG.....................................................201.000.00---1.00-----------------
.........................TTTTTGCTAAGTTGGTAGCC.............................................................................................................................................................................................................2011.001.00-----1.00---------------
...............ATTTTTTTTTTTTTTGCTAAGTTGG..................................................................................................................................................................................................................2511.001.00-----1.00---------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTTAT...................................................3211.001.00---1.00-----------------
...............ATTTTTTTTTTTTTTGCTAAGTTGGT.................................................................................................................................................................................................................2611.001.00-----1.00---------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTCC....................................................311.000.001.00--------------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTCGG....................................................311.000.00---1.00-----------------
........................................................................................................................................................................ATTTCAATACTTTTTCTTTTATCTCTTCAG....................................................301.000.00--1.00------------------
...............ATTTTTTTTTTTTTTGCTAAGTTGGC.................................................................................................................................................................................................................2611.001.00-----1.00---------------
............................................................................................................................................................................CAATACTTTTTCTTTTTGT...........................................................191.000.00----1.00----------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTCTC....................................................311.000.00-1.00-------------------
.........AGGATAATTTTTTTTTTTTGC............................................................................................................................................................................................................................211.000.00------1.00--------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTTTAG..................................................3311.001.00---1.00-----------------
...............................................AATATAACAGCTCCGCACAACTGCAA.................................................................................................................................................................................261.000.00------1.00--------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTTAAA..................................................3311.001.00--1.00------------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTCTCA...................................................321.000.001.00--------------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTCTAG..................................................331.000.001.00--------------------
........................................................................................................................................................................ATTTCAATACTTTTTCTTTTATCTCTCCTC....................................................301.000.00-1.00-------------------
....................................................................TGTAAATGTCCACTCTTTCAG.................................................................................................................................................................211.000.00----------1.00----------
..AATGAATAGGATAATTTTTTTTTTTG..............................................................................................................................................................................................................................261.000.00--1.00------------------
............................................................................................................................................................................CAATACTTTTTCTTTTATCTCCCAG.....................................................251.000.001.00--------------------
..............................................................................................................................................................................ATACTTTTTCTTTTATCTCTTTTCAG..................................................2611.001.001.00--------------------
.....................TTTTTTTTTGCTAAGACGA..................................................................................................................................................................................................................191.000.00--------------1.00------
....................................................................TGTAAATGTCCACTCTGAG...................................................................................................................................................................191.000.00----------1.00----------
........................................................................................................................................................................................................................TAGGCTTGTTGTTTTACAGT..............2011.001.00----------------1.00----
..............AATTTTTTTTTTTTTTGCTATGA.....................................................................................................................................................................................................................231.000.00-------1.00-------------
.................TTTTTTTTTTTTTGCTAAGTTGGCAG...............................................................................................................................................................................................................261.000.00-----1.00---------------
.................................................................................................................................................................................CTTTTTCTTTTATCTCTTTTCAG..................................................2311.001.00-1.00-------------------
........TAGGATAATTTTTTTTTTTGCC............................................................................................................................................................................................................................221.000.00------1.00--------------
...............ATTTTTTTTTTTTTTGCTAAGTTGGCAGC..............................................................................................................................................................................................................2911.001.00-----1.00---------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTCTC.....................................................301.000.00-1.00-------------------
..........................................................................................................................................................................TTCAATACTTTTTCTTTTGTTG..........................................................221.000.00-------1.00-------------
.........................................................................................................................................................................................................................AGGCTTGTTGTTTTACAGTGTTAGAG.......261.000.00------1.00--------------
......AATAGGATAATTTTTTTTTTTTTCC...........................................................................................................................................................................................................................251.000.00-----1.00---------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTCTT.....................................................301.000.00----1.00----------------
.........................TTTTTGCTAAGTTGGTAGCCAG...........................................................................................................................................................................................................2211.001.00------1.00--------------
.........AGGATAATTTTTTTTTTTGT.............................................................................................................................................................................................................................201.000.00-----1.00---------------
..................................................................................................................................................................TACTGCATTTCAATACTTTCTC..................................................................221.000.00----1.00----------------
........................................................................................................................................................................ATTTCAATACTTTTTCTTTTATCTCTTTCAG...................................................311.000.00-1.00-------------------
..AATGAATAGGATAATTTTTTTTTT................................................................................................................................................................................................................................2411.001.00-----1.00---------------
.....................TTTTTTTTTGCTAAGTTCTG.................................................................................................................................................................................................................201.000.00-----------1.00---------
............ATAATTTTTTTTTTTTTTGCTAAGGTG...................................................................................................................................................................................................................271.000.00----1.00----------------
................................................................................................................................................................................................................................TTGTTTTACAGTGTTAGTTTG.....211.000.00-----------------1.00---
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTA.....................................................301.000.00---1.00-----------------
.......................................................................................................................................................................................................................ATAGGCTTGTTGTTTTACAGT..............2111.001.00------------1.00--------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTC.....................................................301.000.00----1.00----------------
................TTTTTTTTTTTTTTGCTAAGTTGGTAGC..............................................................................................................................................................................................................2811.001.00------1.00--------------
........................................................................................................................................................................................................................TAGGCTTGTTGTTTTACAGTGTTAGTGACCCA..321.000.00------1.00--------------
.......ATAGGATAATTTTTTTTTTTGCT............................................................................................................................................................................................................................231.000.00------1.00--------------
...............................................................................................................................................................................TACTTTTTCTTTTATCTCTTTTCAG..................................................2511.001.00-1.00-------------------
......AATAGGATAATTTTTTTTTTTTGC............................................................................................................................................................................................................................241.000.00-----1.00---------------
..AATGAATAGGATAATTTTTTTTG.................................................................................................................................................................................................................................231.000.00-1.00-------------------
......................................................................................................................................................ACTTTCCCAGTGTACTGCATCCC.............................................................................231.000.00------1.00--------------
...............................................................................................................................................................................................................TCAGAAGAATAGGCTTGTTGTTCTAC.................261.000.00------1.00--------------
....TGAATAGGATAATTTTTTTTTTTTGC............................................................................................................................................................................................................................261.000.00------1.00--------------
..........................................................................................................................................................................TTCAATACTTTTTCTTTTATCTCTTTTCAG..................................................3011.001.001.00--------------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCCTTT.......................................................281.000.00---1.00-----------------
............ATAATTTTTTTTTTTTTTGCTAAGC.....................................................................................................................................................................................................................251.000.00----1.00----------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTCAAA..................................................331.000.00--1.00------------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCCAG......................................................2911.002.001.00--------------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTTTTC......................................................291.000.00--1.00------------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTCCAG...................................................321.000.001.00--------------------
.........................................................................................................................................................................................................................AGGCTTGTTGTTTTACAGTGTTAGTGACCC...301.000.00-----1.00---------------
...............................................................................................................................................................................TACTTTTTCTTTTATCTCTTTCCAG..................................................251.000.00------1.00--------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTTGAG..................................................3311.001.00---1.00-----------------
..................................................................................................................................................................................TTTTTCTTTTATCTCTTTTCAG..................................................2211.001.00-------------1.00-------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTTTCCGG..................................................331.000.00-1.00-------------------
............ATAATTTTTTTTTTTTTTGCTAAGTTGG..................................................................................................................................................................................................................2811.001.00-----1.00---------------
...............ATTTTTTTTTTTTTTGCTAAGTCGGT.................................................................................................................................................................................................................261.000.00-----1.00---------------
............................................................................................................................................................................CAATACTTTTTCTTTTATCTCTTTCAG...................................................271.000.00--1.00------------------
...............ATTTTTTTTTTTTTTGCTCTAG.....................................................................................................................................................................................................................221.000.00------1.00--------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTTTTA......................................................291.000.00--1.00------------------
.......................................................................................................................................................................CATTTCAATACTTTTTCTTTTATCTCTCAA.....................................................301.000.001.00--------------------
...................TTTTTTTTTTTGCTAAGTTGGC.................................................................................................................................................................................................................221.000.00-----1.00---------------
...............ATTTTTTTTTTTTTTGCTAAGTCGG..................................................................................................................................................................................................................251.000.00-----1.00---------------
...........................................................................................................................................................................................................TTCCTCAGAAGAATAGGCTTGTTGTC.....................261.000.00------1.00--------------
......AATAGGATAATTTTTTTTT.................................................................................................................................................................................................................................1950.600.60----0.60----------------
......................................................................................................................................................................................................................AATAGGCTTGTTGTTTT...................1720.500.50-------------------0.50-
..................TTTTTTTTTTTTGCTAAGTTGG..................................................................................................................................................................................................................2220.500.50------0.50--------------
......AATAGGATAATTTTTTTTTGC...............................................................................................................................................................................................................................2150.400.60-----0.40---------------
......AATAGGATAATTTTTTTT..................................................................................................................................................................................................................................1880.250.25----0.25----------------
......AATAGGATAATTTTTTTTTTG...............................................................................................................................................................................................................................2150.200.20-----0.20---------------
......AATAGGATAATTTTTTTTTT................................................................................................................................................................................................................................2050.200.20----0.20----------------
.................................................................................................................................................................................CTTTTTCTTTTATCTCTT.......................................................1880.120.12------------------0.12--

Antisense strand
GGAATGAATAGGATAATTTTTTTTTTTTTTGCTAAGTTGGTAGCCAGAATATAACAGCTCCGCACAACTGTAAATGTCCACTCTTCAATCCACATGAAGAAAAGGGTAAAAATATGGTTGAACTCAACCACTAGTTGCCCATTAGAACAGACTTTCCCAGTGTACTGCATTTCAATACTTTTTCTTTTATCTCTTTTCAGATCTTCCTCAGAAGAATAGGCTTGTTGTTTTACAGTGTTAGTGATCCATT
...............................................................((.((((..((.(((...((((((.......))))))...((((((.....((((((....))))))....)))))).........))).))..)))))).......................................................................................
...............................................................64..........................................................................................................................188............................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189787SRR189783SRR037937(GSM510475)
293cand2. (cell line)		SRR189784SRR189782SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		GSM532883(GSM532883)
G871N. (cervix)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................CAACTTAGCAAAAAAAAAAAAA................................................................................................................................................................................................................... 2231.671.67---------1.67-----------
................CAACTTAGCAAAAAAAAAAAAAA................................................................................................................................................................................................................... 2331.331.33---------1.33-----------
...................................................................................................AAAAGGGTAAAAATATAT..................................................................................................................................... 181.000.00----1.00----------------
.........................................................................................................GTAAAAATATGGTTGTTA............................................................................................................................... 181.000.00-----------1.00---------
.............................................................................................................................AACCACTAGTTGCCCATGT.......................................................................................................... 191.000.00-------1.00-------------
.............................................................................GTGGATTGAAGAGTGG............................................................................................................................................................. 1620.500.50------------------0.50--
................................................................................ATGTGGATTGAAGAG........................................................................................................................................................... 1550.200.20--------------------0.20