ID: uc004eaa.1_intron_6_0_chrX_70775236_f.3p
GENE: (7)
chrX:70775604-70775853+


(2)
BRAIN 		(2)
BREAST 		(6)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(5)
HELA 		(2)
LIVER 		(1)
OTHER 		(4)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
AAAAAGGAAAGTCTTTTGTACAAGTATTGAGATGGTATATTGGTTTACTTTAGAGTTTTGGTTGAGGGTAAGAATACCAAAAAATATCAATTTTCTGTAGCATTACCAGCCATTAGGCTTAATTAAACAATTATTAGAACAGTATCAGTGGAGGCTTTATGATTCTGTACAGTTTTTGAAGACTTTGTTTTGTTTTCTAGGTTGCTGAAGCAGAAGATTGTTATAATACAGCTCTCCGTCTGTGTCCCAC
......................................................................................................................................((((((((..((..((((((((.(((......))).))))))))..))..))))))))..........................................................
......................................................................................................................................135..............................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189782SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR040036(GSM532921)
G243N. (cervix)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR553576(SRX182782)
source: Testis. (testes)
......................................................................................................................................TAGAACAGTATCAGTGGAGGCTTTATGATTCTGTACAGTTTTTGAAGACTTTGTTTTGTTTTCTAG..................................................66120.0020.0011.009.00------------------------
..................................................................................................................................TTATTAGAACAGTATCAGTGGAGGCTTTATGATTCTGTACAGTTTTTGAAGACTTTGTTTTGTTTTCTA...................................................69113.0013.00-13.00------------------------
.................................................................................................................................ATTATTAGAACAGTATCAGTGGAGGCTTTATGATTCTGTACAGTTTTTGAAGACTTTGTTTTGTTTTCTAG..................................................71112.0012.0012.00-------------------------
................................................................................................................................................TCAGTGGAGGCTTTATGATTCTGTACAGTTTTTGAAGACTTTGTTTTGTTTTCTAG..................................................5617.007.002.004.00--1.00---------------------
............................................................................................................................................AGTATCAGTGGAGGCTTTATGATTCTGTACAGTTTTTGAAGACTTTGTTTTGTTTTCTAG..................................................6017.007.007.00-------------------------
.................................................................................................................................ATTATTAGAACAGTATCAGTGGAGGCTTTATGATTCTGTACAGTTTTTGAAGACTTTGTTTTGTTTTCTA...................................................7017.007.00-7.00------------------------
.......................................................................................................................................AGAACAGTATCAGTGGAGGCTTTATGATTCTGTACAGTTTTTGAAGACTTTGTTTTGTTTTCTAG..................................................6516.006.005.001.00------------------------
................................................................................................................................AATTATTAGAACAGTATCAGTGGAGGCTTTATGATTCTGTACAGTTTTTGAAGACTTTGTTTTGTTTTCTAG..................................................7214.004.004.00-------------------------
...............................................................................................................................................ATCAGTGGAGGCTTTATGATTCTGTACAGTTTTTGAAGACTTTGTTTTGTTTTCTAG..................................................5713.003.003.00-------------------------
...........................................................................................................................................CAGTATCAGTGGAGGCTTTATGATTCTGTACAGTTTTTGAAGACTTTGTTTTGTTTTCTAGT.................................................623.000.00-3.00------------------------
.......................................................................................................................................................AGGCTTTATGATTCTGTACAGTTTTTGAAGA....................................................................3113.003.00---3.00----------------------
.............................................................................................................................................GTATCAGTGGAGGCTTTATGATTCTGTACAGTTTTTGAAGACTTTGTTTTGTTTTCTAG..................................................5913.003.003.00-------------------------
............................................................................................................................................AGTATCAGTGGAGGCTTTATGATTCTGT..................................................................................2813.003.00-------2.00-----------1.00------
.............................................................................................................................................................................................................TGAAGCAGAAGATTGTATAG.........................203.000.00--2.00-----------------1.00-----
..................................................................................................................................TTATTAGAACAGTATCAGTGGAGGCTTTATGATTCTGTACAGTTTTTGAAGACTTTGTTTTGTTTTCTAG..................................................7012.002.00----2.00---------------------
...................................................................................................................................................GTGGAGGCTTTATGATTCTGTACAGTTTTTGAAGACTTTGTTTTGTTTTCTAGT.................................................542.000.00-2.00------------------------
.............................................................................................................................................................................................................TGAAGCAGAAGATTGTAGAC.........................201.000.00--1.00-----------------------
............................................................................................................................................................................................................CTGAAGCAGAAGATTGTTATAATACA....................2611.001.00--------------1.00-----------
...........................................................................................................................................CAGTATCAGTGGAGGCTTTAT..........................................................................................2111.001.00---------------1.00----------
...........................................................................................................................................................................................................GCTGAAGCAGAAGATTGTTATAA........................2311.001.00----------------1.00---------
..............................................................................................................................................TATCAGTGGAGGCTTTATGATTCTGTACAGTTTTTGAAGACTTTGTTTTGTTTTCTAG..................................................5811.001.00-1.00------------------------
................................................................................................................................AATTATTAGAACAGTATCAGTGGAGGCTTTATGATTCTGTACAGTTTTTGAAGACTTTGTTTTGTTTTCT....................................................7011.001.00--------1.00-----------------
............................................................................................................................................................................................................CTGAAGCAGAAGATTGTTAT..........................2011.001.00-----1.00--------------------
...........................................................................................................................................................................................................GCTGAAGCAGAAGATTGTT............................1911.001.00-----1.00--------------------
...................................................................................................................................................GTGGAGGCTTTATGATTCTGTACAGTTTTTGAAGACTTTGTTTTGTTTTCTA...................................................5211.001.00----------------------1.00---
.....................................................................................................................................................................................ACTTTGTTTTGTTTTCCCGG.................................................201.000.00------1.00-------------------
.....................................................................................................................................................................................ACTTTGTTTTGTTTTCGGTG.................................................201.000.00------1.00-------------------
...........................................................................................................................................CAGTATCAGTGGAGGCTTTATGATTCTGTACAGTTTTTGAAGACTTTGTTTTGTTTTCTAT..................................................611.000.00--------1.00-----------------
.......................................................................................................................................................AGGCTTTATGATTCTGTACAGTTTTTGCAGA....................................................................311.000.00---1.00----------------------
........................................................................................................................................................................................................GTTGCTGAAGCAGAAGA.................................1711.001.00---------1.00----------------
.........................................................................................................................................................................................................................TTGTTATAATACAGCTCTCCGT...........2211.001.00-------------1.00------------
.............................................................................................................................................................................................................TGAAGCAGAAGATTGCAGG..........................191.000.00-----------1.00--------------
.............................................................................................................................................................................................................TGAAGCAGAAGATTGTACAG.........................201.000.00--1.00-----------------------
..................................................................................AATATCAATTTTCTGTAGCATTA.................................................................................................................................................2311.001.00-----1.00--------------------
..............................................................................................................................................................................................................................ATAATACAGCTCTCCGTCTG........2011.001.00------------------1.00-------
.......................GTATTGAGATGGTATATTGGTTTACTTTAGAGTTT................................................................................................................................................................................................3511.001.00---------------------1.00----
........................................................................................................................................................................................................GTTGCTGAAGCAGAAGATTGTTATAATACAG...................3111.001.00----------1.00---------------
............................................................................CCAAAAAATATCAATTTT............................................................................................................................................................1840.250.25------------------------0.25-
.............................................................................................................................................................TATGATTCTGTACAGT.............................................................................1640.250.25-------------------------0.25

Antisense strand
AAAAAGGAAAGTCTTTTGTACAAGTATTGAGATGGTATATTGGTTTACTTTAGAGTTTTGGTTGAGGGTAAGAATACCAAAAAATATCAATTTTCTGTAGCATTACCAGCCATTAGGCTTAATTAAACAATTATTAGAACAGTATCAGTGGAGGCTTTATGATTCTGTACAGTTTTTGAAGACTTTGTTTTGTTTTCTAGGTTGCTGAAGCAGAAGATTGTTATAATACAGCTCTCCGTCTGTGTCCCAC
......................................................................................................................................((((((((..((..((((((((.(((......))).))))))))..))..))))))))..........................................................
......................................................................................................................................135..............................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189782SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR040036(GSM532921)
G243N. (cervix)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR553576(SRX182782)
source: Testis. (testes)
.AAAAGGAAAGTCTTTTGG....................................................................................................................................................................................................................................... 182.000.00--2.00-----------------------
...................................TATATTGGTTTACTTGGCT.................................................................................................................................................................................................... 191.000.00-----------------1.00--------
.....................................................................................................ATTACCAGCCATTAGTATT.................................................................................................................................. 191.000.00------------1.00-------------
................................................................................................................................................................................................................................ACGGAGAGCTGTATT........... 1520.500.50-----------------------0.50--