ID: uc004dtz.2_intron_1_0_chrX_55028063_f.3p
GENE: (2)
chrX:55028484-55028733+


(1)
AGO1.ip
(3)
AGO2.ip
(1)
AGO3.ip
(3)
B-CELL
(2)
BREAST
(10)
CELL-LINE
(3)
CERVIX
(3)
HEART
(6)
HELA
(2)
LIVER
(2)
OTHER
(9)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
TATCAATGTAAAACACTTAGAACATTCTGTGGCTTTTTTAGATGTAGGAACTGAGACTCCAGGGTTTGAATAAGGTTGCCCAAGAACCACACTTTATGAAGATGACTTAGATGACTTGTGTGGGGACAATTGGAGTGGGACAGGCTGTGCAACAGGCTATTGACTGCCAGGTCTGCTCAGAGTGCCCTGTCTGTTCCCAGGTGTAGCCACCTTCTGTAAGGACAATGCTACCCCAGTGGCTGCTGAAGAA
...................................................................................................................................((((..((.(((((((.(((((.(((........)))..)).))).))).....))))))..))))..((.....))..........................................
..................................................................................................................................131...........................................................................209.......................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553576(SRX182782)
source: Testis. (testes)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040040(GSM532925)
G612N. (cervix)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
GSM532876(GSM532876)
G547T. (cervix)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM339994(GSM339994)
hues6. (cell line)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR029130(GSM416759)
DLD2. (cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR040032(GSM532917)
G603N. (cervix)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
.......................................................................................................................................TGGGACAGGCTGTGCAACAGGC.............................................................................................22130.0030.006.002.004.005.00--1.00-2.00-1.00-2.001.001.001.00---------1.001.00----1.00----1.00----
.......................................................................................................................................TGGGACAGGCTGTGCAACAGGCA............................................................................................2316.0030.002.00-----2.00--------------1.00-1.00-----------------
.....................................................................................................................................AGTGGGACAGGCTGTGCAACAGGC.............................................................................................2415.005.00-2.00--1.00----1.00---------1.00---------------------
.......................................................................................................................................TGGGACAGGCTGTGCAACAGG..............................................................................................2113.003.00-1.00------------------1.00-------1.00------------
...............................................................................................................................AATTGGAGTGGGACAGGC.........................................................................................................1812.002.00-----2.00-----------------------------------
...............................................................................................................................................................................................................CACCTTCTGTAAGGACAATGC......................2111.001.00----------------------1.00------------------
......................................................................................................................TGTGGGGACAATTGGAGTGGGACAGGC.........................................................................................................2711.001.00-------1.00---------------------------------
.....................................................................................................................................AGTGGGACAGGCTGTGCAACAGGCTA...........................................................................................2611.001.00----1.00------------------------------------
...................................................................................................................................................................................................................TTCTGTAAGGACAATGCGGTA..................211.000.00-------------------------------------1.00---
.....................................................................................................................................................................................................................CTGTAAGGACAATGCTACCCCAGTGGCTGC.......3011.001.00----------1.00------------------------------
.....................................................................................................................................AGTGGGACAGGCTGTGCAACAGGGTA...........................................................................................261.000.00------------------------1.00----------------
.....................ACATTCTGTGGCTTTTGGC..................................................................................................................................................................................................................191.000.00-1.00---------------------------------------
......................................................................................................................................GTGGGACAGGCTGTGCAACAGG..............................................................................................2211.001.00------------------------------1.00----------
.....................................................................................................................................AGTGGGACAGGCTGTGCAAC.................................................................................................2011.001.00---------1.00-------------------------------
.......................................................................................................................................TGGGACAGGCTGTGCAACAGGT.............................................................................................2211.003.00--1.00--------------------------------------
.............................................................................................................................................................................................................................ACAATGCTACCCCAGTGGCTGCTG.....2411.001.00---------------------------------------1.00-
..........................................................................................................................................................................................CTGTCTGTTCCCAGGAGTC.............................................191.000.00----------------1.00------------------------
.......................................................................................................................................TGGGACAGGCTGTGCAACAGGA.............................................................................................2211.003.00---------------------------------1.00-------
......................................................................................................................................GTGGGACAGGCTGTGCAACAGGC.............................................................................................2311.001.001.00----------------------------------------
...............................................................................................................................................................................................................CACCTTCTGTAAGGACAATGCTACC..................2511.001.00-----------------------------------1.00-----
....................................................................................................................................................................................AGTGCCCTGTCTGTTCCCAGT.................................................211.000.00--------------------------------1.00--------
.....................................................................................................................................AGTGGGACAGGCTGTGCAACAGGT.............................................................................................241.000.00---------------------------1.00-------------
......................................................................................................................................................................................................................TGTAAGGACAATGCTACCCCAGTGGC..........2611.001.00-----------1.00-----------------------------
.....................................................................................................................................AGTGGGACAGGCTGTGCAACAAG..............................................................................................231.000.00-----------------1.00-----------------------
.......................................................................................................................................TGGGACAGGCTGTGCAACCGGC.............................................................................................221.000.00----1.00------------------------------------
..................................................................................................................................................................ACTGCCAGGTCTGCTCAGAGTGCCCCGTC...........................................................291.000.00-----------------------------1.00-----------
......................................................................................................................................................................................................................TGTAAGGACAATGCTACCCCAGTGGCTGC.......2911.001.00-----------1.00-----------------------------
...........................................................................................................................................................................................TGTCTGTTCCCAGGTGT..............................................1711.001.00------------------1.00----------------------
.....................................................................................................................................AGTGGGACAGGCTGTGCAACAGT..............................................................................................231.000.00--------------------------------------1.00--
........................TTCTGTGGCTTTTTTCGGT...............................................................................................................................................................................................................191.000.00-------1.00---------------------------------
.....................................................................................................................................AGTGGGACAGGCTGTGCAACAGGCATTG.........................................................................................2811.005.00-------1.00---------------------------------
.......................................................................................................................................TGGGACAGGCTGTGCAACAGGCG............................................................................................2311.0030.00--1.00--------------------------------------
.............................................AGGAACTGAGACTCCAGG...........................................................................................................................................................................................1820.500.50-------------0.50---------------------------
............................................................................................................................................CAGGCTGTGCAACAGG..............................................................................................1660.500.50---0.50-------------------------------------
...................................TTTTAGATGTAGGAACTG.....................................................................................................................................................................................................1820.500.50----------------------------------------0.50

Antisense strand
TATCAATGTAAAACACTTAGAACATTCTGTGGCTTTTTTAGATGTAGGAACTGAGACTCCAGGGTTTGAATAAGGTTGCCCAAGAACCACACTTTATGAAGATGACTTAGATGACTTGTGTGGGGACAATTGGAGTGGGACAGGCTGTGCAACAGGCTATTGACTGCCAGGTCTGCTCAGAGTGCCCTGTCTGTTCCCAGGTGTAGCCACCTTCTGTAAGGACAATGCTACCCCAGTGGCTGCTGAAGAA
...................................................................................................................................((((..((.(((((((.(((((.(((........)))..)).))).))).....))))))..))))..((.....))..........................................
..................................................................................................................................131...........................................................................209.......................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553576(SRX182782)
source: Testis. (testes)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040040(GSM532925)
G612N. (cervix)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
GSM532876(GSM532876)
G547T. (cervix)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM339994(GSM339994)
hues6. (cell line)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR029130(GSM416759)
DLD2. (cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR040032(GSM532917)
G603N. (cervix)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
.......................................................................................................................................................................................GCCCTGTCTGTTCCCATT................................................. 181.000.00-----1.00-----------------------------------
........................................................................................................................................................................................CCCTGTCTGTTCCCAGAGCT.............................................. 201.000.00----------------------------------1.00------