ID: uc004dsp.2_intron_57_0_chrX_53630463_r.3p
GENE: (26)
chrX:53630413-53630662-


(1)
BRAIN 		(2)
BREAST 		(8)
CELL-LINE 		(5)
CERVIX 		(1)
FIBROBLAST 		(5)
HEART 		(2)
HELA 		(3)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(17)
SKIN

Sense strand
AAATAGTTTGTAAATATTGTAAGAGGATACCTTGTGGAACTGTCGTCTTGAGTGTGGACATTTTGATGAGGTGGATAACTCTGAGAATAGCAATGAAGAAAAATCCCTTACCCTTATAAAACTGTTGAAGGTCAATTTTTTTTTTTAAGTATAATTGTTCAGAGAACATCCCAAAGGTGAAATTCTTGTTATGATTGCAGAGTGAAATTCGTTCCATCTCCGTAAACCAGTGGGGCTCTCAATTGGGTCT
...............................................................(((..(((.......(((((((........((((((((((......(((.(((.........))).))).....))))))))))..........)))))))..((((.....))))....)))..)))...........................................................
..................................................51...........................................................................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189785SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040039(GSM532924)
G531T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR040027(GSM532912)
G220T. (cervix)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM532886(GSM532886)
G850T. (cervix)
.........................................................................................................................................................................CCCAAAGGTGAAATTTTTG..............................................................1934.000.0030.002.00----1.00-------------1.00-----------------------------
...........................................................................................................................................................................................GTTATGATTGCAGAGCCC.............................................187.000.00-----1.00-1.00-------------1.00---------1.00--1.00------1.00-----1.00--
.........................................................................................................................................................................CCCAAAGGTGAAATTTTG...............................................................187.000.006.001.00------------------------------------------------
.........................................................................................................................................................................CCCAAAGGTGAAATTTG................................................................175.000.004.00-----1.00-------------------------------------------
.............................................................................................................................................................................AAGGTGAAATTCTTGGACC..........................................................194.000.00-----------------------------1.001.00----1.00--1.00-----------
...................................................GTGTGGACATTTTGATGAGGTGGATAACTC.........................................................................................................................................................................3013.003.00--3.00-----------------------------------------------
...........................................................................................................................................................................................GTTATGATTGCAGAGCC..............................................173.000.00----------1.00-1.00--------------------------------1.00----
...........................................................................................................................................................................................GTTATGATTGCAGAGCCCG............................................193.000.00-------1.00----------1.00--------------------1.00----------
.............................................................................................................................................................................AAGGTGAAATTCTTGGAC...........................................................182.000.00--------1.00--------------1.00--------------------------
.........................................................................................................................................................................CCCAAAGGTGAAATTTTCG..............................................................192.000.002.00-------------------------------------------------
................................................................GATGAGGTGGATAACTCTGAGAATAGCAATGA..........................................................................................................................................................3211.001.00-----------1.00--------------------------------------
...............................................................................................................................................................................................................................AAACCAGTGGGGCTCTCAAT.......2011.001.00---1.00----------------------------------------------
..............................................................................................................................................................................................................................TAAACCAGTGGGGCTCTCAAT.......2111.001.00---1.00----------------------------------------------
.............................................................................................................................................................................................................................GTAAACCAGTGGGGCTCTC..........1911.001.00--------1.00-----------------------------------------
....................................................TGTGGACATTTTGATGAGGTGGATAACTCT........................................................................................................................................................................3011.001.00----------------------------1.00---------------------
............................................................................................................................................................................AAAGGTGAAATTCTTGGAC...........................................................191.000.00-------------1.00------------------------------------
........................................................................................................................................................................TCCCAAAGGTGAAATTCTTGTTT...........................................................231.000.00-------------------------1.00------------------------
..................................TGGAACTGTCGTCTTGAGTGTGGACA..............................................................................................................................................................................................2611.001.00----1.00---------------------------------------------
......................................................................................................................................................................................TTCTTGTTATGATTGCAG..................................................1811.001.00---------------------------------1.00----------------
...............ATTGTAAGAGGATACCTTG........................................................................................................................................................................................................................1911.001.00---1.00----------------------------------------------
.........................................................................................................................................................................................................................CTCCGTAAACCAGTGGGGCTATC..........231.000.00--------------1.00-----------------------------------
.........................................................................................................................................................................CCCAAAGGTGAAATTGTCG..............................................................191.000.001.00-------------------------------------------------
..........................................................................................................................................................................................................TGAAATTCGTTCCATCTC..............................1811.001.00-------------------------------------------1.00------
......................................................TGGACATTTTGATGAGGT..................................................................................................................................................................................1811.001.00------------------------------------1.00-------------
...........................................................................................................................................................................................GTTATGATTGCAGAGCGC.............................................181.000.00--------------------------------1.00-----------------
.....................................................................................................AATCCCTTACCCTTATCTCA.................................................................................................................................201.000.00---------1.00----------------------------------------
........................................................................................................................................................................................................................TCTCCGTAAACCAGTGGGGCTCTCA.........2511.001.00-----1.00--------------------------------------------
..................GTAAGAGGATACCTTGTGGAACTGTCGTCTT.........................................................................................................................................................................................................3111.001.00----------------------1.00---------------------------
.................TGTAAGAGGATACCTTGTGGA....................................................................................................................................................................................................................2111.001.00------------------------------------------1.00-------
.............................................................................................................................................................................................................................GTAAACCAGTGGGGCTCTCA.........2011.001.00------------------------1.00-------------------------
............................................................................................................................................................................AAAGGTGAAATTCTTGTTATGATTGCAG..................................................2811.001.00-------------------1.00------------------------------
.........................................................................................................................................................................CCCAAAGGTGAAATTTAAC..............................................................191.000.001.00-------------------------------------------------
...............................................................................................................................................................................................................TTCGTTCCATCTCCGT...........................1611.001.00-------------------------------------1.00------------
..............................................................................................................................................................................................................................TAAACCAGTGGGGCTCTC..........1811.001.00-----------------1.00--------------------------------
..................................................................................GAGAATAGCAATGAAGAAAAATCCCTTACCC.........................................................................................................................................3111.001.00---------------------------1.00----------------------
......................................................................................................................................................................................................................................TGGGGCTCTCAATTGGGT..1811.001.00----------------------------------------------1.00---
...................................................................................................................................................................................AAATTCTTGTTATGATTGCAG..................................................2111.001.00---------------1.00----------------------------------
...................................................GTGTGGACATTTTGATGAG....................................................................................................................................................................................1911.001.00----------------------------------------1.00---------
......................GAGGATACCTTGTGGAACTGTCGTC...........................................................................................................................................................................................................2511.001.00----1.00---------------------------------------------
...................................................................................................................................TCAATTTTTTTTTTTATATT...................................................................................................201.000.00---------1.00----------------------------------------
..................................................................................GAGAATAGCAATGAAGT.......................................................................................................................................................1730.330.33-------------------------------------------------0.33
..................................................................................GAGAATAGCAATGAAG........................................................................................................................................................1630.330.33------------------------------------------------0.33-

Antisense strand
AAATAGTTTGTAAATATTGTAAGAGGATACCTTGTGGAACTGTCGTCTTGAGTGTGGACATTTTGATGAGGTGGATAACTCTGAGAATAGCAATGAAGAAAAATCCCTTACCCTTATAAAACTGTTGAAGGTCAATTTTTTTTTTTAAGTATAATTGTTCAGAGAACATCCCAAAGGTGAAATTCTTGTTATGATTGCAGAGTGAAATTCGTTCCATCTCCGTAAACCAGTGGGGCTCTCAATTGGGTCT
...............................................................(((..(((.......(((((((........((((((((((......(((.(((.........))).))).....))))))))))..........)))))))..((((.....))))....)))..)))...........................................................
..................................................51...........................................................................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189785SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040039(GSM532924)
G531T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR040027(GSM532912)
G220T. (cervix)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM532886(GSM532886)
G850T. (cervix)
............................................................................................................................................................GTTCAGAGAACATCCTCTG........................................................................... 192.000.00--------------------------1.00-----------------1.00-----
..............................................................................................................................................................TCAGAGAACATCCCAGGC.......................................................................... 181.000.00----------------1.00---------------------------------