ID: uc004dsn.2_intron_24_0_chrX_53584389_r.3p
GENE: (28)
chrX:53584339-53584588-


(1)
AGO3.ip 		(1)
B-CELL 		(2)
BRAIN 		(8)
BREAST 		(11)
CELL-LINE 		(6)
HEART 		(2)
HELA 		(1)
KIDNEY 		(9)
LIVER 		(2)
OTHER 		(6)
SKIN 		(1)
TESTES

Sense strand
TGAACCTGAGTATGTATAGAGAAATTGGTCATATATTTGCACAGTGAAATGATCACCTTCCTTTGGTCACATGGCCAAAGCATTCTCCATTAGATCACTGAACTCCTAGATGGTCTGGGTGGAGGATGGTGACTATTACAGTTGACCTCTATCTTAGGTGCTTGCAAAGTCCCACATTGGTCTATCCCTTCTTTTTGCAGTGTACTGCATCTAAGTCAAATGACTCCACTGAACAGAATCTCTCAGGTAA
.......................................................................(((.((...((((((((((((((((((((......))).)))))))).))))))))).)).)))...................................................................................................................
.....................................................................70...............................................................135.................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR037943(GSM510481)
293DcrTN. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189784SRR189785SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191494(GSM715604)
157genomic small RNA (size selected RNA from . (breast)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR191484(GSM715594)
12genomic small RNA (size selected RNA from t. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		TAX577579(Rovira)
total RNA. (breast)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR029125(GSM416754)
U2OS. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................................CCAAAGCATTCTCCATTTG.............................................................................................................................................................1919.000.0019.00-----------------------------------------------------
........................................................................................................................................................................................................................CAAATGACTCCACTGAACAGA.............2119.009.00--3.00-------2.00---1.00------------1.00-----1.00-----------1.00--------
..................................................................................................................................................................................................................................CACTGAACAGAATCTCTCAG....2017.007.00-7.00----------------------------------------------------
...........................................................................CAAAGCATTCTCCATCTG.............................................................................................................................................................186.000.006.00-----------------------------------------------------
...........................................................................CAAAGCATTCTCCATGTG.............................................................................................................................................................184.000.003.00---1.00-------------------------------------------------
...........................................................................CAAAGCATTCTCCATATG.............................................................................................................................................................184.000.004.00-----------------------------------------------------
...........................................................................CAAAGCATTCTCCATTGG.............................................................................................................................................................183.000.003.00-----------------------------------------------------
....................................................................................................................................................................................................................................CTGAACAGAATCTCTCAGATGG2223.000.50--1.001.00--1.00-----------------------------------------------
...........................................................................................................AGATGGTCTGGGTGGAGGATGGCG.......................................................................................................................242.000.00--------2.00---------------------------------------------
........................................................................................................................................................................................................................CAAATGACTCCACTGAACAG..............2012.002.00--1.00-------------------------------------------1.00-------
...........................................................................CAAAGCATTCTCCATTCG.............................................................................................................................................................182.000.002.00-----------------------------------------------------
..................................................................................................................................................................................................................................CACTGAACAGAATCTCTCAGATGG2412.007.00-------------1.00-------------------------1.00--------------
..........................................................................CCAAAGCATTCTCCATTCG.............................................................................................................................................................192.000.002.00-----------------------------------------------------
...................................................................................................................................................................................................................................ACTGAACAGAATCTCTCAGATGG232.000.00---1.00------------1.00-------------------------------------
..........................................................................CCAAAGCATTCTCCATTGG.............................................................................................................................................................192.000.002.00-----------------------------------------------------
.........................................................................................................................................................................................................................AAATGACTCCACTGAACAGA.............2012.002.00---------1.00-------------------------------1.00------------
........................................................................................................................................................................................................................CAAATGACTCCACTGAACAGAAT...........2312.002.00-------2.00----------------------------------------------
.....................................................................................................................................................................................................................AGTCAAATGACTCCACTGAACAGAA............2512.002.00---------1.00------1.00-------------------------------------
..........................................................................CCAAAGCATTCTCCATCTG.............................................................................................................................................................192.000.002.00-----------------------------------------------------
...........................................................................................................................................................................................................................ATGACTCCACTGAACAGAATCTCTCAGGT..2912.002.00---------------2.00--------------------------------------
.............................................................................................................ATGGTCTGGGTGGAGGATGGT........................................................................................................................2111.001.00---------1.00--------------------------------------------
.......................................................................................................................................................................................................................TCAAATGACTCCACTGAACAG..............2111.001.00-------------------------------------1.00----------------
...........................................................................CAAAGCATTCTCCATCAG.............................................................................................................................................................181.000.001.00-----------------------------------------------------
.................................................................................................................................................................................................................................CCACTGAACAGAATCTCTCAGA...2211.001.00-------1.00----------------------------------------------
........................................................................................................................................................................................................................CAAATGACTCCACTGAACAGAATC..........2411.001.00-----------------1.00------------------------------------
.....................................................................................................................................................................................................................AGTCAAATGACTCCACTGAA.................2011.001.00--------------------------------1.00---------------------
..........................................................................CCAAAGCATTCTCCATTTA.............................................................................................................................................................191.000.001.00-----------------------------------------------------
.....................................................................................................ACTCCTAGATGGTCTGGGTGGAGGATGGCGAG.....................................................................................................................321.000.00-----------1.00------------------------------------------
..............................................................................................................................................................................................................GCATCTAAGTCAAATGACTCCACTGAACAGA.............3111.001.00-----------------------------1.00------------------------
............................................................................................................................................................................................................................TGACTCCACTGAACAGAATCTCTCAGA...271.000.00----------------------------1.00-------------------------
..........................................................................CCAAAGCATTCTCCACTCT.............................................................................................................................................................191.000.001.00-----------------------------------------------------
..................................................................................TTCTCCATTAGATCACTGAACTCCTAG.............................................................................................................................................2711.001.00--1.00---------------------------------------------------
...........................................................................................................................................................................................................................ATGACTCCACTGAACAGAATCTCTCAGATGG311.000.00----------------------1.00-------------------------------
..........................................................................................................................................................................................................TACTGCATCTAAGTCAAATGAC..........................2211.001.00--------------1.00---------------------------------------
........................................................................................................................................................................................................................CAAATGACTCCACTGAACAGAATT..........2411.002.00------------------------------------------1.00-----------
..........................................................................................................................................................................................................................AATGACTCCACTGAACAGAATC..........2211.001.00---1.00--------------------------------------------------
.........................................................................................................................................................................TCCCACATTGGTCTAGCGG..............................................................191.000.00-----------------------------------------------1.00------
..........................................................................CCAAAGCATTCTCCATCCG.............................................................................................................................................................191.000.001.00-----------------------------------------------------
.........................................................................................................................................................................................................................AAATGACTCCACTGAACAGAATC..........2311.001.00------1.00-----------------------------------------------
..........................................................................CCAAAGCATTCTCCATCGG.............................................................................................................................................................191.000.001.00-----------------------------------------------------
...........................................................................CAAAGCATTCTCCATTTA.............................................................................................................................................................181.000.001.00-----------------------------------------------------
.................................................................................................................................................................................................................................CCACTGAACAGAATCTCTCAG....2111.001.00------------------1.00-----------------------------------
...........................................................................CAAAGCATTCTCCATTTTTG...........................................................................................................................................................201.000.001.00-----------------------------------------------------
.........................................................................................................................................................................................................................AAATGACTCCACTGAACAGAATA..........231.000.00---1.00--------------------------------------------------
...............................................................................................................................................................................................................CATCTAAGTCAAATGACTCCACTGAACAG..............2911.001.00-------------------------1.00----------------------------
...................................................................................................................................................................................................................................ACTGAACAGAATCTCTCAGAT..211.000.00---1.00--------------------------------------------------
...........................................................................CAAAGCATTCTCCATTTT.............................................................................................................................................................181.000.00-----1.00------------------------------------------------
...........................................................................CAAAGCATTCTCCATCGG.............................................................................................................................................................181.000.001.00-----------------------------------------------------
...........................................................................CAAAGCATTCTCCATTTGG............................................................................................................................................................191.000.001.00-----------------------------------------------------
........................................................................................................................................................................................................................CAAATGACTCCACTGAACAGAATCTCTCAGA...311.000.00--------------------------------------------1.00---------
......................................................................................................................................................................................................................................GAACAGAATCTCTCAGATG.191.000.00------1.00-----------------------------------------------
...ACCTGAGTATGTATAG.......................................................................................................................................................................................................................................1621.001.00-----------------------------------1.00------------------
.......................................................................................................................................................................................................GTGTACTGCATCTAAG...................................1611.001.00---------------------1.00--------------------------------
.....................................................................................................ACTCCTAGATGGTCTGGGTGGAGGACGG.........................................................................................................................281.000.00-----------1.00------------------------------------------
.........................................................................................................................................................................................................................AAATGACTCCACTGAACAGAATCT.........2411.001.00------------------------1.00-----------------------------
...........................................................................................................................................................................................................................ATGACTCCACTGAACAGAAGAA.........2211.001.00-------------------1.00----------------------------------
........................................................................................................................................................................................................................CAAATGACTCCACTGAACAGAATCTCTC......2811.001.00----------------------------------------1.00-------------
.........................................................................................................................................................................................................................AAATGACTCCACTGAACAGAA............2111.001.00-------------------------------1.00----------------------
..........................................................................CCAAAGCATTCTCCACTTG.............................................................................................................................................................191.000.001.00-----------------------------------------------------
...........................................................................CAAAGCATTCTCCATCCG.............................................................................................................................................................181.000.001.00-----------------------------------------------------
...........................................................................................................................................................................................................................ATGACTCCACTGAACAGAA............1911.001.00--------------------1.00---------------------------------
..........................................................................CCAAAGCATTCTCCATTGGTA...........................................................................................................................................................211.000.001.00-----------------------------------------------------
.............................................................................................................ATGGTCTGGGTGGAGGATGGTGACTACAG................................................................................................................291.000.00--------1.00---------------------------------------------
........................................................................................................................................................................................................................CAAATGACTCCACTGAACAGAT............2211.009.00--------------------------1.00---------------------------
...........................................................................CAAAGCATTCTCCATCG..............................................................................................................................................................171.000.00----1.00-------------------------------------------------
...........................................................................................................................................................................................................................ATGACTCCACTGAACAGAATCTC........2311.001.00---1.00--------------------------------------------------
.........................................................................................................................................................................................................................AAATGACTCCACTGAACAGAATAA.........241.000.00-------------1.00----------------------------------------
..............................................................................................................................................................................................................................ACTCCACTGAACAGAATCTCT.......2111.001.00------------------------------1.00-----------------------
.....................................................................................................................................................................................................................................TGAACAGAATCTCTCAG....1730.670.67------------------------------------------------0.67-----
.............................................................................................................................................................................................................................GACTCCACTGAACAGAA............1720.500.50-------------------------------------------------0.50----
....................................................................................................................................................................................................................................CTGAACAGAATCTCTCAG....1820.500.50--------------------------------------------------0.50---
..........................................................................................................................................................................................................................AATGACTCCACTGAACA...............1730.330.33-----------------0.33------------------------------------
.....................................................................................................................................................................................................................................TGAACAGAATCTCTCAGATGG2130.330.67---------------------------------------------------0.33--
.....................................................................................................................................................................................................................................TGAACAGAATCTCTCA.....1640.250.25----------------------------------------------------0.25-
........................................................................................................................................................................................................................CAAATGACTCCACTG...................1590.110.11-----------------------------------------------------0.11

Antisense strand
TGAACCTGAGTATGTATAGAGAAATTGGTCATATATTTGCACAGTGAAATGATCACCTTCCTTTGGTCACATGGCCAAAGCATTCTCCATTAGATCACTGAACTCCTAGATGGTCTGGGTGGAGGATGGTGACTATTACAGTTGACCTCTATCTTAGGTGCTTGCAAAGTCCCACATTGGTCTATCCCTTCTTTTTGCAGTGTACTGCATCTAAGTCAAATGACTCCACTGAACAGAATCTCTCAGGTAA
.......................................................................(((.((...((((((((((((((((((((......))).)))))))).))))))))).)).)))...................................................................................................................
.....................................................................70...............................................................135.................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR037943(GSM510481)
293DcrTN. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189784SRR189785SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191494(GSM715604)
157genomic small RNA (size selected RNA from . (breast)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR191484(GSM715594)
12genomic small RNA (size selected RNA from t. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		TAX577579(Rovira)
total RNA. (breast)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR029125(GSM416754)
U2OS. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................................................................................TCACCATCCTCCACCCAG...................................................................................................................... 1826.006.00----3.502.50------------------------------------------------
.................................................................................................................................................................................................................TCTAAGTCAAATGACTCAC...................... 192.000.00------------2.00-----------------------------------------
..................................................................................................................CTGGGTGGAGGATGGTGACA.................................................................................................................... 202.000.00-----------------------1.00--------------1.00---------------
........................................................................................................................................................................................................................................ACAGAATCTCTCAGGACG 181.000.00-------------------------------------------1.00----------
.............................................................................................................................................................GTGCTTGCAAAGTCCCACAGCA....................................................................... 221.000.00------------------------------------1.00-----------------
...........ATGTATAGAGAAATTGCA............................................................................................................................................................................................................................. 181.000.00----------------------------------1.00-------------------