ID: uc004dnb.2_intron_8_0_chrX_49066503_r
GENE: (39)
chrX:49066453-49066810-


(1)
B-CELL
(7)
BRAIN
(19)
BREAST
(6)
CELL-LINE
(6)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(2)
LIVER
(5)
OTHER
(8)
SKIN
(1)
TESTES
(1)
UTERUS

Sense strand
CGCCACACTCTTTGCCCTGGTCCGGACATCCCTGAAGATCAAAACAGAAGGTGTAGGGGAGGGGCAGGAGTGGGATCGTTCCTGGGGAGGGTGCAAGGAGCAAACTCATTGAATCATGGGCCCCACTCCTAGCTCTGAACCCCAGAATGGGTGACAGGATTCTCCAGGCCTGTTTCCCCCCACCCCGTCCAATGGGGGCGGTGTGCATCTGCGGTAGCAGCTTGTGAAGTTCCCCCCACCCAACAGTGAGGGGGCAGCTGTGGAGGTTCTTCCTATTGGCTCATGCCCCACATCCTCCTCCAACGCAGGGAACCTGGAGCAAGCCAACCAGGAGCTGCGGATTGTCATCAAAAAGATC
................................................................................................................................................................................................................(((((...((((((.........((((((((......))).))))).))))))(((((...........(((....))).........)))))..)))))..................................................
............................................................................................................................................................................................................205....................................................................................................308................................................
SizePerfect hitTotal NormPerfect NormSRR189782TAX577740(Rovira)
total RNA. (breast)
SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR189787SRR040016(GSM532901)
G645N. (cervix)
SRR189785TAX577579(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
TAX577588(Rovira)
total RNA. (breast)
SRR040029(GSM532914)
G026T. (cervix)
SRR189783SRR038855(GSM458538)
D10. (cell line)
TAX577590(Rovira)
total RNA. (breast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577453(Rovira)
total RNA. (breast)
SRR040035(GSM532920)
G001T. (cervix)
SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR191575(GSM715685)
85genomic small RNA (size selected RNA from t. (breast)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191452(GSM715562)
178genomic small RNA (size selected RNA from . (breast)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR191481(GSM715591)
43genomic small RNA (size selected RNA from t. (breast)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR191510(GSM715620)
158genomic small RNA (size selected RNA from . (breast)
SRR040039(GSM532924)
G531T. (cervix)
SRR040022(GSM532907)
G575N. (cervix)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR038857(GSM458540)
D20. (cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191473(GSM715583)
121genomic small RNA (size selected RNA from . (breast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTATAG.................................................................................................................................2013.000.006.002.00---------1.00-1.00-2.00--1.00---------------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTACAG.................................................................................................................................207.000.005.00-1.00------1.00------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................GGAGCTGCGGATTGTGGGT.........1914.001.00----------------1.00--1.00---------------------------1.00-1.00--------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTGAGGTT...............................................................................................................................223.000.00-----------2.001.00---------------------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTAT...................................................................................................................................183.000.00-1.00------1.00--------1.00----------------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTA....................................................................................................................................172.000.00-1.00----------------------------------------------1.00---------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTGCTG.................................................................................................................................202.000.00--1.00---------1.00---------------------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTATG..................................................................................................................................192.000.00--2.00-------------------------------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTGTAG.................................................................................................................................202.000.001.00-----------------1.00---------------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTGTGGG................................................................................................................................212.000.00----------1.00------------------------1.00----------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTATAT.................................................................................................................................202.000.00--1.00------------------------------------------------1.00------
................................................................................................................................................................................................................................................................................................CACATCCTCCTCCAAAG.....................................................172.000.00---------2.00------------------------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTGCTGT................................................................................................................................212.000.00-2.00--------------------------------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTATAA.................................................................................................................................202.000.00-------------1.00------1.00-------------------------------------
...........................................................AGGGGCAGGAGTGGGAGAG........................................................................................................................................................................................................................................................................................191.000.00---1.00------------------------------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTGTTTT................................................................................................................................211.000.00-1.00--------------------------------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTGATGCT...............................................................................................................................221.000.00------------------------1.00---------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTGGTGT................................................................................................................................211.000.00-------1.00--------------------------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTGCGGA................................................................................................................................211.000.00-------1.00--------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................GGAGCTGCGGATTGTGGG..........1811.001.00-------------------------------------1.00--------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTCTGT.................................................................................................................................201.000.00--------------1.00-------------------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTATTG.................................................................................................................................201.000.001.00---------------------------------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTCTTG.................................................................................................................................201.000.00--1.00-------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................GGAGCTGCGGATTGT.............1511.001.00---------------------------------------1.00------------------
...............................................................................................................................................................................CCCCCCACCCCGTCCGCCC....................................................................................................................................................................191.000.00-----------------------------------------------------1.00----
........TCTTTGCCCTGGTCCTTAG...........................................................................................................................................................................................................................................................................................................................................191.000.00---------------------1.00------------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTAGGG.................................................................................................................................201.000.001.00---------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................GGAGCTGCGGATTGTAAA..........1811.001.00----------------------------1.00-----------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGGGT...................................................................................................................................181.000.00-------------------------1.00--------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTCTCG.................................................................................................................................201.000.00------------1.00---------------------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTAGCG.................................................................................................................................201.000.001.00---------------------------------------------------------
...............................................................................................................................................................................................ATGGGGGCGGTGTGCTATC....................................................................................................................................................191.000.00---1.00------------------------------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTAAA..................................................................................................................................191.000.001.00---------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AACGCAGGGAACCTGGGGCT.....................................201.000.00---1.00------------------------------------------------------
............................................................GGGGCAGGAGTGGGATTTTT......................................................................................................................................................................................................................................................................................201.000.00----------------1.00-----------------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTGTGA.................................................................................................................................201.000.00----1.00-----------------------------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTCTCC.................................................................................................................................201.000.00--------1.00-------------------------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTGAAGGC...............................................................................................................................221.000.00-------1.00--------------------------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTGTGTT................................................................................................................................211.000.00----1.00-----------------------------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTGTTG.................................................................................................................................201.000.001.00---------------------------------------------------------
....................................GATCAAAACAGAAGGGCT................................................................................................................................................................................................................................................................................................................181.000.00---------------------1.00------------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTCTAG.................................................................................................................................201.000.001.00---------------------------------------------------------
.................................................................................................................................................................................................................TGCGGTAGCAGCTTGTCT...................................................................................................................................181.000.00------------------------------1.00---------------------------
........................................................................................................................................................................................................................................................AGGGGGCAGCTGTGGAGG............................................................................................1820.500.50---0.50------------------------------------------------------
...........................................................................................................................................................................................................................................................GGGCAGCTGTGGAGGT...........................................................................................1630.330.33---------------------------------------------------------0.33

Antisense strand
CGCCACACTCTTTGCCCTGGTCCGGACATCCCTGAAGATCAAAACAGAAGGTGTAGGGGAGGGGCAGGAGTGGGATCGTTCCTGGGGAGGGTGCAAGGAGCAAACTCATTGAATCATGGGCCCCACTCCTAGCTCTGAACCCCAGAATGGGTGACAGGATTCTCCAGGCCTGTTTCCCCCCACCCCGTCCAATGGGGGCGGTGTGCATCTGCGGTAGCAGCTTGTGAAGTTCCCCCCACCCAACAGTGAGGGGGCAGCTGTGGAGGTTCTTCCTATTGGCTCATGCCCCACATCCTCCTCCAACGCAGGGAACCTGGAGCAAGCCAACCAGGAGCTGCGGATTGTCATCAAAAAGATC
................................................................................................................................................................................................................(((((...((((((.........((((((((......))).))))).))))))(((((...........(((....))).........)))))..)))))..................................................
............................................................................................................................................................................................................205....................................................................................................308................................................
SizePerfect hitTotal NormPerfect NormSRR189782TAX577740(Rovira)
total RNA. (breast)
SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
SRR189787SRR040016(GSM532901)
G645N. (cervix)
SRR189785TAX577579(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
TAX577588(Rovira)
total RNA. (breast)
SRR040029(GSM532914)
G026T. (cervix)
SRR189783SRR038855(GSM458538)
D10. (cell line)
TAX577590(Rovira)
total RNA. (breast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577453(Rovira)
total RNA. (breast)
SRR040035(GSM532920)
G001T. (cervix)
SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR191575(GSM715685)
85genomic small RNA (size selected RNA from t. (breast)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191452(GSM715562)
178genomic small RNA (size selected RNA from . (breast)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR191481(GSM715591)
43genomic small RNA (size selected RNA from t. (breast)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR191510(GSM715620)
158genomic small RNA (size selected RNA from . (breast)
SRR040039(GSM532924)
G531T. (cervix)
SRR040022(GSM532907)
G575N. (cervix)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR038857(GSM458540)
D20. (cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191473(GSM715583)
121genomic small RNA (size selected RNA from . (breast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
..............................................................GGCAGGAGTGGGATCACCA..................................................................................................................................................................................................................................................................................... 197.000.00------3.00---------------------------1.00------1.001.00--1.00------------
............................................................GGGGCAGGAGTGGGATCC........................................................................................................................................................................................................................................................................................ 183.000.00----------1.00--------------------------------1.00--1.00-----------
...................TTCAGGGATGTCCGGAC.................................................................................................................................................................................................................................................................................................................................. 1713.003.00-----3.00----------------------------------------------------
............................................................GGGGCAGGAGTGGGATCCT....................................................................................................................................................................................................................................................................................... 192.000.00----------1.00---------------------------1.00-------------------
............................................................GGGGCAGGAGTGGGATCATT...................................................................................................................................................................................................................................................................................... 202.000.00-----------------------------1.00----------------------1.00-----
............................................................GGGGCAGGAGTGGGATCCTT...................................................................................................................................................................................................................................................................................... 201.000.00---------------------------1.00------------------------------
...............................................................................................................................................................................................................................................................................................................................CAAGCCAACCAGGAGTCA..................... 181.000.00---------------------------------1.00------------------------
.............................................................................................................................................CCAGAATGGGTGACATGTG...................................................................................................................................................................................................... 191.000.00--------------1.00-------------------------------------------
...............................................................................................................................................................................................................................................................................................................................CAAGCCAACCAGGAGCTCA.................... 191.000.00--------------------------------------------1.00-------------
..............................................GAAGGTGTAGGGGAGACC...................................................................................................................................................................................................................................................................................................... 181.000.00--------------------------1.00-------------------------------
..............................................................................................................................TCCTAGCTCTGAACCCTGT..................................................................................................................................................................................................................... 191.000.00------------------------------------------------------1.00---
............................................................GGGGCAGGAGTGGGATCTAG...................................................................................................................................................................................................................................................................................... 201.000.00-----------------1.00----------------------------------------
............................................................GGGGCAGGAGTGGGATCACC...................................................................................................................................................................................................................................................................................... 201.000.00--------1.00-------------------------------------------------
............................................................GGGGCAGGAGTGGGATCCCA...................................................................................................................................................................................................................................................................................... 201.000.00--------------------------------1.00-------------------------
............................................................GGGGCAGGAGTGGGATCAA....................................................................................................................................................................................................................................................................................... 191.000.00------------------------------------1.00---------------------
.............................................................GGGCAGGAGTGGGATGCA....................................................................................................................................................................................................................................................................................... 181.000.00-------------------------------------------------------1.00--
............................................................GGGGCAGGAGTGGGATCT........................................................................................................................................................................................................................................................................................ 181.000.00--------------------1.00-------------------------------------
...................................................................................................................................................................CCAGGCCTGTTTCCCGAGT................................................................................................................................................................................ 191.000.00----------------------------------------1.00-----------------
........................................................................................................................................................................................................................................................................................................................CCTGGAGCAAGCCAACCC............................ 181.000.00----1.00-----------------------------------------------------
...........................................................AGGGGCAGGAGTGGGATA......................................................................................................................................................................................................................................................................................... 181.000.00----------------------1.00-----------------------------------
.........................................................................................................................................................................................................................................................................................CATGCCCCACATCCTCCGT.......................................................... 191.000.00-------------------------------1.00--------------------------
............................................................................................................................................................................CATTGGACGGGGTGGGGGGAAA.................................................................................................................................................................... 2211.001.00--------------------------------------------------1.00-------
......................................................................................................................................................................................................................................................................................CGTTGGAGGAGGATGTGGGGCATGAGC..................................................... 2711.001.00-1.00--------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................TTTTGATGACAATCCGCAGCTCCTGG..... 2611.001.00-------------------1.00--------------------------------------
................................................................................................................................................................................CCCCCACCCCGTCCATGGA................................................................................................................................................................... 191.000.00-----------------------1.00----------------------------------
...................................................................................................................................................................................................................................................................................TTGGCTCATGCCCCAGGAG................................................................ 191.000.00--1.00-------------------------------------------------------
............................................................GGGGCAGGAGTGGGATCATA...................................................................................................................................................................................................................................................................................... 201.000.00--------------------------------------------------------1.00-