ID: uc004dmz.1_intron_1_0_chrX_49048221_r.3p
GENE: SYP(5)
chrX:49048171-49048420-


(1)
AGO2.ip 		(1)
AGO3.ip 		(3)
B-CELL 		(10)
BRAIN 		(5)
BREAST 		(4)
CELL-LINE 		(2)
CERVIX 		(3)
HEART 		(2)
HELA 		(1)
LIVER 		(2)
OTHER 		(9)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CAAATTCTTCTAACACGCCCACCCCGCCAGAGGTGATTTTTCTGCACATCGACGTTCTCGCACTGGGACTCAGAGAGTCTGGGTTTCAGAAACCCCCACCTTGCGGAGCCTACGGATTCATTCCCCGCATGCTCATTCCTGCACGCAGGGCCGCCAAGGCAATGGGCGGGGTACCACAGCCGAGCCTTGTCTCCCTGCAGGTGTTCGGCTTCCTGAACCTGGTGCTCTGGGTCGGCAACCTGTGGTTCGT
................................................................................................................................................((((((....((((((....(((.((...))...)))..))))))...))))))....................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040029(GSM532914)
G026T. (cervix)		SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040012(GSM532897)
G648N. (cervix)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
...................................................................................................................................................................................CCGAGCCTTGTCTCCCTGCAGT.................................................22142.001.0042.00---------------------------------------------
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGCAGT.................................................21118.005.00-4.003.00--1.00-1.00----1.00-1.00--1.00--------1.00--1.00----1.001.001.00-----1.00---
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGCAGA.................................................2119.005.00--1.007.001.00-----------------------------------------
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGCAG..................................................2015.005.00-4.00---------------------------------------1.00----
...................................................................................................................................................................................CCGAGCCTTGTCTCCCTGCAGTAA...............................................2413.001.003.00---------------------------------------------
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGCAGTAA...............................................2312.005.00-------------------------------------1.00-----1.00--
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGCATT.................................................212.000.00--1.00--1.00----------------------------------------
...................................................................................................................................................................................CCGAGCCTTGTCTCCCTGCAGTT................................................2312.001.002.00---------------------------------------------
.....................................................................................................................................................................................................................TGAACCTGGTGCTCTGGGTCGGCA.............2412.002.00-----1.00---------------------1.00------------------
...................................................................................................................................................................................CCGAGCCTTGTCTCCCTGCAGTA................................................2312.001.002.00---------------------------------------------
.............................................................................................................................................CACGCAGGGCCGCCAAGGCAAT.......................................................................................2212.002.001.00-----1.00---------------------------------------
...................................................................................................................................................................................CCGAGCCTTGTCTCCCTGC....................................................1912.002.002.00---------------------------------------------
......................................................................................................................................................................................................................GAACCTGGTGCTCTGGGTCGGCA.............2312.002.00----2.00-----------------------------------------
..............................................................................................................................................ACGCAGGGCCGCCAAGGCAATGG.....................................................................................2311.001.00-1.00--------------------------------------------
............................................................................................................................................................................................................................GGTGCTCTGGGTCGGCA.............1711.001.00----1.00-----------------------------------------
.............................................................................................................................................CACGCAGGGCCGCCAAGGCAATGGGT...................................................................................2611.001.001.00---------------------------------------------
...................................................................................................................................................................................CCGAGCCTTGTCTCCCTGCAGA.................................................2211.001.00----------------------------------------1.00-----
..............................................................................................................................................ACGCAGGGCCGCCAAGGCAATGGGC...................................................................................2511.001.00-1.00--------------------------------------------
...................................................................................................................................................................................................TGCAGGTGTTCGGCTTCA.....................................181.000.00----------------------1.00-----------------------
.............................................................................................................................................CACGCAGGGCCGCCAAGGCAATGG.....................................................................................2411.001.001.00---------------------------------------------
......................................................................................................................................................................................................................................GTCGGCAACCTGTGGTTCG.1911.001.00----------------------------1.00-----------------
.............................................................................................................................................CACGCAGGGCCGCCAAGGCAATGGGC...................................................................................2611.001.001.00---------------------------------------------
.............CACGCCCACCCCGCCCC............................................................................................................................................................................................................................171.000.00-------------1.00--------------------------------
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGCAGTC................................................2211.005.00-------------------1.00--------------------------
........................................................................................................................................................................................................................ACCTGGTGCTCTGGGTCGGCA.............2111.001.00--------------------1.00-------------------------
...............................................................................................................................................................................................................................GCTCTGGGTCGGCAACCTGTGGT....2311.001.00--1.00-------------------------------------------
.............................................................................................................................................CACGCAGGGCCGCCAAGGCAATGGGCT..................................................................................2711.001.00---------------------------------------1.00------
...........................................................................................................................................................................................................................TGGTGCTCTGGGTCGGCAACCTG........2311.001.00--------------------------------------1.00-------
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGCAGG.................................................2111.001.00------------------1.00---------------------------
.............................................................................................................................................CACGCAGGGCCGCCAAGGCAATG......................................................................................2311.001.001.00---------------------------------------------
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGCGG..................................................201.000.00-1.00--------------------------------------------
...................................................................................................................................................................................................................................TGGGTCGGCAACCTGTGGAAT..211.000.00--------------------------------1.00-------------
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGTAG..................................................201.000.00------------------------1.00---------------------
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGTAGT.................................................211.000.00------1.00---------------------------------------
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGCAGTAT...............................................2311.005.00------------------------------1.00---------------
..............................................................................................................................................ACGCAGGGCCGCCAAGGCAATGGGCCT.................................................................................2711.001.00---------------------------------1.00------------
......................................................................................................................................................................................................................GAACCTGGTGCTCTGGGTCGGC..............2211.001.00----1.00-----------------------------------------
....................................................................................................................................................................................CGAGCCTTGTCTCCCTGCAGAA................................................2211.005.00-1.00--------------------------------------------
.............................................................................................................................................CACGCAGGGCCGCCAAGGCAATGGG....................................................................................2511.001.001.00---------------------------------------------
...........................................................................................................................................................................................................................TGGTGCTCTGGGTCGGCAACCTGTGG.....2611.001.00--1.00-------------------------------------------
...................................................................................................................................................................................CCGAGCCTTGTCTCCCTGCAG..................................................2111.001.00----1.00-----------------------------------------
.............................................................................................................................................CACGCAGGGCCGCCAAGGAA.........................................................................................201.000.00-1.00--------------------------------------------
..............................................................................................................................................................................................................GGCTTCCTGAACCTGGTGCTCTGGGTCGGC..............3011.001.00--1.00-------------------------------------------
....................................................................................................................................................................................................................CTGAACCTGGTGCTCTGGGTCGG...............2311.001.00-----1.00----------------------------------------
...........................................................................................................................................................................................................................TGGTGCTCTGGGTCGGCAA............1911.001.00-------1.00--------------------------------------
.............................................................................................................................................CACGCAGGGCCGCCAAGGCAT........................................................................................211.000.00-1.00--------------------------------------------
.................................................................................................................................................................................................................................TCTGGGTCGGCAACCTGTGGTT...2211.001.00--1.00-------------------------------------------
.............................................................................................................................................................................................................CGGCTTCCTGAACCTGGTG..........................1920.500.50---------------------------------------------0.50

Antisense strand
CAAATTCTTCTAACACGCCCACCCCGCCAGAGGTGATTTTTCTGCACATCGACGTTCTCGCACTGGGACTCAGAGAGTCTGGGTTTCAGAAACCCCCACCTTGCGGAGCCTACGGATTCATTCCCCGCATGCTCATTCCTGCACGCAGGGCCGCCAAGGCAATGGGCGGGGTACCACAGCCGAGCCTTGTCTCCCTGCAGGTGTTCGGCTTCCTGAACCTGGTGCTCTGGGTCGGCAACCTGTGGTTCGT
................................................................................................................................................((((((....((((((....(((.((...))...)))..))))))...))))))....................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040029(GSM532914)
G026T. (cervix)		SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040012(GSM532897)
G648N. (cervix)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
............................................................................CGGCCCTGCGTGCAGGAATGAGCATGCGGGGAATGAATCCGTAGGCTCCGCAAGGTGGGGGTTTCTGAAACCCAGAC................................................................................................. 7712.002.00--------2.00-------------------------------------
....................................................................................................................................................................................CGAACACCTGCAGGGAGACAAGGCTCG........................................... 2711.001.00-------------------------1.00--------------------
............................................................................................................................................ATTGCCTTGGCGGCCCTGCGTGC....................................................................................... 2311.001.00-----------1.00----------------------------------
............................................CAGTGCGAGAACGTCGATGTG......................................................................................................................................................................................... 2111.001.00---------------------1.00------------------------
................................................................................................................................................................GCTCGGCTGTGGTACCCCGCCCATT................................................................. 2511.001.00--------------------------------------------1.00-
...........AACACGCCCACCCCGGC.............................................................................................................................................................................................................................. 171.000.00---------1.00------------------------------------
............ACACGCCCACCCCGCCGGT........................................................................................................................................................................................................................... 191.000.00---------------1.00------------------------------
..................................................TCTGAGTCCCAGTGCGAGAACGTC................................................................................................................................................................................ 2411.001.00----------------1.00-----------------------------
...........................................................................................................................................................................................................ACCAGGTTCAGGAAGCCGAA........................... 2011.001.00----------1.00-----------------------------------
...........AACACGCCCACCCCGCAC............................................................................................................................................................................................................................. 181.000.00-------------------------------1.00--------------
..................................GTCGATGTGCAGAAAAATC..................................................................................................................................................................................................... 1911.001.00-----------------------1.00----------------------