ID: uc004dkh.1_intron_0_0_chrX_48456003_f
GENE: (1)
chrX:48455953-48456395+


(2)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(2)
AGO2.ip
(14)
B-CELL
(6)
BRAIN
(9)
BREAST
(38)
CELL-LINE
(14)
CERVIX
(1)
FIBROBLAST
(6)
HEART
(6)
HELA
(1)
KIDNEY
(11)
LIVER
(3)
OTHER
(1)
RRP40.ip
(38)
SKIN
(1)
UTERUS
(2)
XRN.ip

Sense strand
GGTCTCAGGGCCGCTCCGGGGGGCCTCAAGAACCGGAGGCAGCCCCGGAGGTGGTCCCCGATCCCGGGCTATGCTCTTGGATCTGAGAAGGGAAGGCGGAGGGCGGCGGGGACAAGATGGGTGGAGAATGTCAAGCAAGGAATGCTAGGCGGGGGAGGGGCGTTGCTATGGCGACTGGGGAGGGGCGGTGTCTGTTCTGAATCGCTGTGTGTCACCCGGGCGCTGCCCAGGAAGGGCAGGGCTGGGGTGATGACCATGGTAACACCCGGGGGGGAGTTCGTGACATCTCCGGCGCGGAGGGACTCGATGTCTATGGCAATGGTCGCCTGGTGGAAGGGACGGAACTAGATCCCTTCGCTCGGGACGCTCACATTCCAGGCCCTTGTCCTGCAGGCTGCCGCGGGCGGACACGCCAGAGGAGGAGGCCGGGGAATGGCCGCGGT
.........................................................................................................................................................................................................................................(((((...((.(((((...((....))..))))).))...((((((.......(((((...)))))))))))..))))).........(((.(((......)))))).......................................................................................................
......................................................................................................................................................................................................................................231......................................................................................................................352.........................................................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR037941(GSM510479)
293DroshaTN. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR040007(GSM532892)
G601T. (cervix)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR040016(GSM532901)
G645N. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
TAX577590(Rovira)
total RNA. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR038860(GSM458543)
MM426. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR040034(GSM532919)
G001N. (cervix)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040026(GSM532911)
G220N. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR040019(GSM532904)
G701T. (cervix)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR029129(GSM416758)
SW480. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
GSM532874(GSM532874)
G699T. (cervix)
SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR040031(GSM532916)
G013T. (cervix)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040039(GSM532924)
G531T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR038859(GSM458542)
MM386. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040017(GSM532902)
G645T. (cervix)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040032(GSM532917)
G603N. (cervix)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029131(GSM416760)
MCF7. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040035(GSM532920)
G001T. (cervix)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
GSM532886(GSM532886)
G850T. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191571(GSM715681)
63genomic small RNA (size selected RNA from t. (breast)
...........................................................................................................................................................................................................................................GCAGGGCTGGGGTGATGACA............................................................................................................................................................................................20117.002.0016.001.00----------------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................GTGGAAGGGACGGAACTAG...............................................................................................19114.0014.00-4.001.008.00-----------------------------------------------------------------------------1.00--------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................GTGGAAGGGACGGAACTA................................................................................................1818.008.00------3.00---3.00-------------------1.00--------------------------------1.00--------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................GCAGGGCTGGGGTGATGACCAT..........................................................................................................................................................................................2216.006.00-----2.00--------------2.001.00------------------------------------1.00-------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................CGGCGCGGAGGGACTCGA........................................................................................................................................1815.005.00-2.00-------2.00-------1.00------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................AGATGGGTGGAGAATGTC.......................................................................................................................................................................................................................................................................................................................1814.004.00--------3.00------------------------------------------------------------------------------------------------1.00--------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................GTGGAAGGGACGGAACTAGA..............................................................................................2014.004.00------1.00------------------------------------1.00--------------------1.00------------------------------------------------------------1.00------------------------
..................................................................................................................................................................................................................................................TGGGGTGATGACCATGGTAACACCCGGGT............................................................................................................................................................................293.000.00------------------3.00-----------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................TCCGGCGCGGAGGGACTC..........................................................................................................................................1813.003.00-----2.00-------------------1.00----------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................GTCGCCTGGTGGAAGGGA........................................................................................................1813.003.00---------1.00---------------1.00-----------------------------------------------------------------1.00----------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................GCGGAGGGACTCGATGTCTA..................................................................................................................................2013.003.00---------2.00------------------------------------------------------------------------------------1.00-------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................GTGGAAGGGACGGAACTAGATCC...........................................................................................2313.003.00------3.00-----------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................TCGCCTGGTGGAAGGGACGG.....................................................................................................2012.002.00-1.00-------------------------------1.00--------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................GTGTGTCACCCGGGCGCT...........................................................................................................................................................................................................................1812.002.00------------------------------------------2.00-----------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................AATGGTCGCCTGGTGGAAGGGA........................................................................................................2212.002.00----------------------------------------------2.00-------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGAGGAGGAGGCCGGG.............2012.002.00--------------------------2.00---------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................CAGGGCTGGGGTGATGACCATG.........................................................................................................................................................................................2212.002.00----------------------1.00------------------------------------------1.00------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................GCAGGGCTGGGGTGATGAC.............................................................................................................................................................................................1912.002.00-----------------1.00---------------------------------------------------------------------------------1.00--------------------------------------------------
..................................................................................................................AGATGGGTGGAGAATGTCAAGCA..................................................................................................................................................................................................................................................................................................................2312.002.00---------------------------2.00--------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................CCTGGTGGAAGGGACGGAA...................................................................................................1912.002.00--------1.00------------------1.00--------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................GCCTGGTGGAAGGGACGGAACT.................................................................................................2212.002.00-2.00----------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................AGAAGGGAAGGCGGAGGGC...................................................................................................................................................................................................................................................................................................................................................1922.002.00----------------------------------------------------------------------------------------------------------------------------------------------1.000.50-0.50----
............................................................................................................................................AATGCTAGGCGGGGGAGGGGCGTTGC.....................................................................................................................................................................................................................................................................................2611.001.00-----------------1.00------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................GCGGAGGGACTCGATGTCTATGGCAATG..........................................................................................................................2811.001.00--------------------------------------------------------------------------------------------------------------------------------1.00---------------------
.............................................................................................................................................................................................................................................................................................................................................AAGGGACGGAACTAGAT.............................................................................................1711.001.00---------------------------------------------------------------------------------------------------------------------------------1.00--------------------
..........................................................................................................................................................................................................................................................TGACCATGGTAACACCC................................................................................................................................................................................1711.001.00------------------------------------------------------------1.00-----------------------------------------------------------------------------------------
...........................................................................................................................................................................CGACTGGGGAGGGGCGGT..............................................................................................................................................................................................................................................................1811.001.00----------------------------------------------------------------------------1.00-------------------------------------------------------------------------
..................................................................................................................................................................................................................................CCAGGAAGGGCAGGGGGAC......................................................................................................................................................................................................191.000.00----------------------------------------------------------------------1.00-------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................TCTCCGGCGCGGAGGGACTCGATG......................................................................................................................................2411.001.00--------1.00---------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................CTGGTGGAAGGGACGGAA...................................................................................................1811.001.00----------------------------------------------------------------------------------------------------------1.00-------------------------------------------
..............................................................................................GGCGGAGGGCGGCGGCGGA..........................................................................................................................................................................................................................................................................................................................................191.000.00----------------------1.00-------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................AGTTCGTGACATCTCCGGC......................................................................................................................................................1911.001.00-----------------1.00------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................CGCCTGGTGGAAGGGACGGA....................................................................................................2011.001.00-------------------------------------------------1.00----------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TCCCTTCGCTCGGGACCAGT..........................................................................201.000.00------------------1.00-----------------------------------------------------------------------------------------------------------------------------------
.......................................................................................AAGGGAAGGCGGAGGGAT..................................................................................................................................................................................................................................................................................................................................................181.000.00---------------------------------------------------------------------------------------1.00--------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................TGGAAGGGACGGAACTAGA..............................................................................................1911.001.00------------------------------------------------------------------------------------------------------------1.00-----------------------------------------
.........................................................................................................................................................................................................................................................................................................................................GTGGAAGGGACGGAACTAGAA.............................................................................................2111.004.00--------------------------------------------------1.00---------------------------------------------------------------------------------------------------
....................................AGGCAGCCCCGGAGGGG......................................................................................................................................................................................................................................................................................................................................................................................................171.000.00---------------1.00--------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................GGTGGAAGGGACGGAACT.................................................................................................1811.001.00-----------------------------------------------------------------1.00------------------------------------------------------------------------------------
.......................................................................................................................................................GGGGAGGGGCGTTGCCGC..................................................................................................................................................................................................................................................................................181.000.00-------1.00----------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................CGGCGCGGAGGGACTCG.........................................................................................................................................1711.001.00----------------------------------1.00-------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................CAGGGCTGGGGTGATGTT.............................................................................................................................................................................................181.000.00---------------------------------------------------------------------------------------------------------------------1.00--------------------------------
.....................................................GTCCCCGATCCCGGGCTATGCTCTTGGA..........................................................................................................................................................................................................................................................................................................................................................................2811.001.00-------------1.00----------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................TGGTGGAAGGGACGGAACTAGATCCC..........................................................................................2611.001.00-------------------------------------------------------------------------------------------------------------------------------1.00----------------------
...........................................................................................................................................................................................................................................GCAGGGCTGGGGTGATGATT............................................................................................................................................................................................201.000.00---------------------------------------------1.00--------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................GGGAGTTCGTGACATCTCCGGCGCGGAG................................................................................................................................................2811.001.00-----------------------------------------------------------------------1.00------------------------------------------------------------------------------
......................................GCAGCCCCGGAGGTGGAA...................................................................................................................................................................................................................................................................................................................................................................................................181.000.00-----------------------------1.00------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................CAGGAAGGGCAGGGCTGGGGTGATTT..............................................................................................................................................................................................261.000.00-------1.00----------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................GTTCGTGACATCTCCGGC......................................................................................................................................................1811.001.00---------------------------------------------1.00--------------------------------------------------------------------------------------------------------
..................................GGAGGCAGCCCCGGAGGTGGTCCCCG...............................................................................................................................................................................................................................................................................................................................................................................................2611.001.00---------------------------------------1.00--------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCAGAGGAGGAGGCC................1811.001.00-----------------------------1.00------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................CGGACACGCCAGAGGAGGAGGC.................2211.001.00-----------------------------------------------------------------------------1.00------------------------------------------------------------------------
.......................................................................................................CGGCGGGGACAAGATGGAC.................................................................................................................................................................................................................................................................................................................................191.000.00----------------------------------------------------------------------------------1.00-------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................TGGTCGCCTGGTGGAAGGGACGGA....................................................................................................2411.001.00--------------------------------1.00---------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................TGCAGGCTGCCGCGGGCGGACCC................................231.000.00-----------------------------------------------1.00------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................TGGTGGAAGGGACGGAATT.................................................................................................191.000.00----------------1.00-------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................CGCGGAGGGACTCGATGT.....................................................................................................................................1811.001.00-------------------------1.00----------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................ATGGTAACACCCGGGTGG..........................................................................................................................................................................181.000.00------------------------------------------------------------------------------------------------------1.00-----------------------------------------------
..........................................................................................................CGGGGACAAGATGGGTGGAGA............................................................................................................................................................................................................................................................................................................................2111.001.00-----------------------------------------------------------------------------------------------1.00------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................CTGGTGGAAGGGACGGAACTAGATCCC..........................................................................................2711.001.00---------------------------------------------------------------------------------------------------------------------------------------1.00--------------
.......................................................................................................................................................................................................................................................................................................................................TGGTGGAAGGGACGGGATG.................................................................................................191.000.00---------------1.00--------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................GGAACTAGATCCCTTCGCTCGGGACGC............................................................................2711.001.00--------------------------------------------------------------------------------------------------------------------------1.00---------------------------
...........................AAGAACCGGAGGCAGCCCCGGAGG........................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00--------------------------------------------------------------------------------------1.00---------------------------------------------------------------
............GCTCCGGGGGGCCTCAAGAACCG........................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00-----------1.00------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................AGATGGGTGGAGAATGTCAAGCAAG................................................................................................................................................................................................................................................................................................................2511.001.00-----------1.00------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................GTGGAAGGGACGGAACT.................................................................................................1711.001.00----------------------------------------------------------1.00-------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................GGTGGAAGGGACGGAACTAG...............................................................................................2011.001.00-1.00----------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................GGCGGAGGGCGGCGGCGT...........................................................................................................................................................................................................................................................................................................................................181.000.00----------------------------------------------------------------------------------------------------1.00-------------------------------------------------
.....................................................................................................................................................................................................................................GGAAGGGCAGGGCTGGGGTGT.................................................................................................................................................................................................211.000.00-------------------1.00----------------------------------------------------------------------------------------------------------------------------------
......................................................................................GAAGGGAAGGCGGAGGGCT..................................................................................................................................................................................................................................................................................................................................................1921.000.50--------------------------------------------------1.00---------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................TGCAGGCTGCCGCGGGCGGACAC................................2311.001.00-----------------------------------------------1.00------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................GCAGGGCTGGGGTGATGACAA...........................................................................................................................................................................................2111.002.00--------------------1.00---------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................GATGTCTATGGCAATGGT........................................................................................................................1811.001.00-----1.00------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................AATGGTCGCCTGGTGGAAGGGAA.......................................................................................................2311.002.00--1.00---------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................TCGCCTGGTGGAAGGGACG......................................................................................................1911.001.00-------------------------------------------1.00----------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................AAGGGCAGGGCTGGGGTGATGACCACGG........................................................................................................................................................................................281.000.00-------------------------------------------------------------------------------------------------------------1.00----------------------------------------
.........................................................................................................................................................................................................................................................................................................................................GTGGAAGGGACGGAAC..................................................................................................1611.001.00-------------------------------------------------------------------1.00----------------------------------------------------------------------------------
..............................................................................................................................................................................................................................CTGCCCAGGAAGGGCAGGGCTG.......................................................................................................................................................................................................2211.001.00------------------------------------1.00-----------------------------------------------------------------------------------------------------------------
....................................................................................GAGAAGGGAAGGCGGAGGGGTCT................................................................................................................................................................................................................................................................................................................................................231.000.00--------------------------------------------------------------------------------------------------------------------------------------1.00---------------
...........................................................................................................................................................................................................................................................................................................................GCAATGGTCGCCTGGTGGAAGGG.........................................................................................................2311.001.00-----------------------------------1.00------------------------------------------------------------------------------------------------------------------
......................................................................................GAAGGGAAGGCGGAGGGCATA................................................................................................................................................................................................................................................................................................................................................2121.000.50-----------------------------------------1.00------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................GCGCGGAGGGACTCGATGTC....................................................................................................................................2011.001.00------------------------------------------------------------------1.00-----------------------------------------------------------------------------------
...................................................................................................................................................................................................................................CAGGAAGGGCAGGGCTGGGG....................................................................................................................................................................................................2021.001.00-1.00----------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................AGGCGGGGGAGGGGC..........................................................................................................................................................................................................................................................................................1501.001.00-------------------------------------------------1.00----------------------------------------------------------------------------------------------------
................................CCGGAGGCAGCCCCGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................181.000.00---------------------------------------------------------------------------------------------------------------------------------------------1.00--------
.................................................................................................................................................................................................................................................................................................................................GTCGCCTGGTGGAAGGGACG......................................................................................................2011.001.00-----------------------------------------------------------------------------------------------------------1.00------------------------------------------
......................................................................................GAAGGGAAGGCGGAGGGA...................................................................................................................................................................................................................................................................................................................................................181.000.00---------------------------------------------------------------------------------------------1.00--------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................ATGGCAATGGTCGCCTGGTG...............................................................................................................2011.001.00----------------------------------1.00-------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................GGGACTCGATGTCTATGGCAATGGTCGC.....................................................................................................................2811.001.00-------------1.00----------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................TGGGGAGGGGCGGTGTCTAATT......................................................................................................................................................................................................................................................221.000.00----------------1.00-------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................TGGGGAGGGGCGGTGTATAG........................................................................................................................................................................................................................................................201.000.00---------------------------------------------------------------------------1.00--------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................CCGGCGCGGAGGGACTCGA........................................................................................................................................1911.001.00------------------------------------1.00-----------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................CAATGGTCGCCTGGTGGAAGGGACGGAAC..................................................................................................2911.001.00-----------1.00------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................AGATGGGTGGAGAATGTCAAGCAAGGAA.............................................................................................................................................................................................................................................................................................................2811.001.00-----------1.00------------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................ATGGCAATGGTCGCCTGGTGGAAGGGACG......................................................................................................2911.001.00-------------1.00----------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................TCCGGCGCGGAGGGACA...........................................................................................................................................171.000.00----------------------------------------------------1.00-------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................CCTGGTGGAAGGGACGGAACTA................................................................................................2211.001.00----------------1.00-------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................GGAGTTCGTGACATCTC..........................................................................................................................................................1711.001.00-----1.00------------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................CTGGTGGAAGGGACGGAACTAGAT.............................................................................................2411.001.00----------------------------------------1.00-------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................TGCAGGCTGCCGCGGGCGGACACGCCAGAGG........................3111.001.00---------------------------------------------------------------------1.00--------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................CAATGGTCGCCTGGTGGAAGGA.........................................................................................................221.000.00----------------1.00-------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................AGGAAGGGCAGGGCTGGGGTGATG...............................................................................................................................................................................................2411.001.00------------------------------------------------1.00-----------------------------------------------------------------------------------------------------
....................................................................................GAGAAGGGAAGGCGGAGGGG...................................................................................................................................................................................................................................................................................................................................................201.000.00------------------------------------------------------------------------------------------------1.00-----------------------------------------------------
............................................................................................................................................................................................................................................................................................................................CAATGGTCGCCTGGTGGAAGGGA........................................................................................................2311.001.00-------1.00----------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................GCAGGCTGCCGCGGGCGGACACGC..............................2411.001.00--------------------------------------------------------------------------------------------------------1.00---------------------------------------------
..............................................................................................................................................................................................................................CTGCCCAGGAAGGGCAGGGCTGG......................................................................................................................................................................................................2311.001.00-----------------------------------------------------------------------------------------------------------------------1.00------------------------------
....................................AGGCAGCCCCGGAGGGGTT....................................................................................................................................................................................................................................................................................................................................................................................................191.000.00---------------1.00--------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................GTCTATGGCAATGGTCGCCTGGTGGAAGGGACGG.....................................................................................................3411.001.00--------------------------------------------------------------------------------------------------------------------------------------------1.00---------
..............................................................................................................................................................................................................................................................................................................CTCGATGTCTATGGCAATGGTCGCCTGGTGGAAGGGACGGAACTAGA..............................................................................................4711.001.00--------------------------------------------------------------------------------------------------------------------1.00---------------------------------
.......................................................................TGCTCTTGGATCTGAGAAG.................................................................................................................................................................................................................................................................................................................................................................1911.001.00------------------------------------------------------------------------------------------------------------------------------------1.00-----------------
.......................................................................................................................................................................................................................................................................................................................TATGGCAATGGTCGCCTGGTGGAAGGGACGG.....................................................................................................3111.001.00---------------------------------------1.00--------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................GACGGAACTAGATCCCTTCGC.....................................................................................2111.001.00----------------------------------------1.00-------------------------------------------------------------------------------------------------------------
...................GGGGCCTCAAGAACCGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00--1.00---------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................AAGGGAAGGCGGAGGGC...................................................................................................................................................................................................................................................................................................................................................1720.500.50--------------------------------------------------------------------------------------------------------------------------------------------------0.50---
................................................................................................................................................................................................................................GCCCAGGAAGGGCAGGGCTGGG.....................................................................................................................................................................................................2220.500.50------------------------------------------------------------------0.50-----------------------------------------------------------------------------------
......................................................................................GAAGGGAAGGCGGAGGGC...................................................................................................................................................................................................................................................................................................................................................1820.500.50-----------------------------0.50------------------------------------------------------------------------------------------------------------------------
........................................................................................AGGGAAGGCGGAGGGC...................................................................................................................................................................................................................................................................................................................................................1630.330.33---------------------------------------------------------------------------------------------------------------------------------------------------0.33--
.....................................GGCAGCCCCGGAGGTG......................................................................................................................................................................................................................................................................................................................................................................................................1630.330.33-------------------------------------------------------------------0.33----------------------------------------------------------------------------------
.....................................................................................AGAAGGGAAGGCGGAGGG....................................................................................................................................................................................................................................................................................................................................................1830.330.33-----------------------------------------------------------------------------------------------------------------------------------------------0.33------
....................................................................................................................................................................................................................................AGGAAGGGCAGGGCTGGG.....................................................................................................................................................................................................1860.330.33------------------------------0.17--------------------------------------0.17--------------------------------------------------------------------------------
...................................................................................................................................................................................................................................CAGGAAGGGCAGGGCTGGG.....................................................................................................................................................................................................1950.200.20-0.20----------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................AGGAAGGGCAGGGCTGG......................................................................................................................................................................................................1790.110.11-----------------------------------------------------------------------------------------------------------------------------------------------------0.11
...............................................................................................................ACAAGATGGGTGGAG.............................................................................................................................................................................................................................................................................................................................1590.110.11-------------0.11----------------------------------------------------------------------------------------------------------------------------------------

Antisense strand
GGTCTCAGGGCCGCTCCGGGGGGCCTCAAGAACCGGAGGCAGCCCCGGAGGTGGTCCCCGATCCCGGGCTATGCTCTTGGATCTGAGAAGGGAAGGCGGAGGGCGGCGGGGACAAGATGGGTGGAGAATGTCAAGCAAGGAATGCTAGGCGGGGGAGGGGCGTTGCTATGGCGACTGGGGAGGGGCGGTGTCTGTTCTGAATCGCTGTGTGTCACCCGGGCGCTGCCCAGGAAGGGCAGGGCTGGGGTGATGACCATGGTAACACCCGGGGGGGAGTTCGTGACATCTCCGGCGCGGAGGGACTCGATGTCTATGGCAATGGTCGCCTGGTGGAAGGGACGGAACTAGATCCCTTCGCTCGGGACGCTCACATTCCAGGCCCTTGTCCTGCAGGCTGCCGCGGGCGGACACGCCAGAGGAGGAGGCCGGGGAATGGCCGCGGT
.........................................................................................................................................................................................................................................(((((...((.(((((...((....))..))))).))...((((((.......(((((...)))))))))))..))))).........(((.(((......)))))).......................................................................................................
......................................................................................................................................................................................................................................231......................................................................................................................352.........................................................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR037941(GSM510479)
293DroshaTN. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR040007(GSM532892)
G601T. (cervix)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR040016(GSM532901)
G645N. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
TAX577590(Rovira)
total RNA. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR038860(GSM458543)
MM426. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR040034(GSM532919)
G001N. (cervix)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040026(GSM532911)
G220N. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR040019(GSM532904)
G701T. (cervix)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR029129(GSM416758)
SW480. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
GSM532874(GSM532874)
G699T. (cervix)
SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR040031(GSM532916)
G013T. (cervix)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040039(GSM532924)
G531T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR038859(GSM458542)
MM386. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040017(GSM532902)
G645T. (cervix)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040032(GSM532917)
G603N. (cervix)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029131(GSM416760)
MCF7. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040035(GSM532920)
G001T. (cervix)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
GSM532886(GSM532886)
G850T. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191571(GSM715681)
63genomic small RNA (size selected RNA from t. (breast)
..CCCCCCGGAGCGGCCCTGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................... 21123.0023.00--------------1.00----1.00----3.00-1.00-1.00--1.00-1.00---1.00------1.00------1.00-----1.00-2.001.00-------1.00-----1.00-----1.00---1.00-----1.00-------------------1.00---------1.00-----------------------------
.......................................ATCGGGGACCACCTCCGGGGCTG............................................................................................................................................................................................................................................................................................................................................................................................. 23114.0014.00----8.00-------5.00---------------------------------------------------1.00-------------------------------------------------------------------------------------
...CTCAGGGCCGCTCCGGGGGGT................................................................................................................................................................................................................................................................................................................................................................................................................................... 2113.000.00-----------1.00---------1.00---------------1.00---1.00------1.00------1.001.00-----1.00----------------------------------1.00-----------------------1.00----1.00------1.00---1.00------------
.......................................CAGCCCCGGAGGTGGTCCCCGATT............................................................................................................................................................................................................................................................................................................................................................................................ 249.000.009.00-----------------------------------------------------------------------------------------------------------------------------------------------------
..TCTCAGGGCCGCTCCGGGGGGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................. 236.000.00-1.00------------------------------1.00-----2.00------------1.00---------1.00----------------------------------------------------------------------------------------
...CCCCCCGGAGCGGCCCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................... 2013.003.00------------------------------------------------------1.00-------------------------------------------1.00----1.00----------------------------------------------
.CCCCCCGGAGCGGCCCTGAGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................... 2213.003.00-------------------------------1.00--------------------1.001.00------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................GTAACACCCGGGGGGAGC....................................................................................................................................................................... 183.000.00-------2.00----------------------------------------------------------------------1.00-----------------------------------------------------------------------
.......................................CAGCCCCGGAGGTGGTCCCCGATG............................................................................................................................................................................................................................................................................................................................................................................................ 243.000.003.00-----------------------------------------------------------------------------------------------------------------------------------------------------
....TCAGGGCCGCTCCGGGGGGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................. 212.000.00----------2.00-------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................ACAGCGATTCAGAACAGACA........................................................................................................................................................................................................................................... 2012.002.00--2.00---------------------------------------------------------------------------------------------------------------------------------------------------
..CCCCGGAGCGGCCCTGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................... 1912.002.00------------------------------------------------------------------------1.00------------------------------------------1.00----------------------------------
....CCCCCCGGAGCGGCCCTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................... 1912.002.00-------------------1.00---------------------------------1.00------------------------------------------------------------------------------------------------
.GTCTCAGGGCCGCTCCGGGGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................... 232.000.00----------------------------------------------------------------------------------------------------------------1.00------------------1.00------------------
.......................................GGACCACCTCCGGGGCTG.................................................................................................................................................................................................................................................................................................................................................................................................. 1821.501.50----------------------------1.50-------------------------------------------------------------------------------------------------------------------------
...CTCAGGGCCGCTCCGGGGGGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................. 221.000.00-------------------------------------------------------1.00----------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................GTAACACCCGGGGGGA......................................................................................................................................................................... 161.000.00-------------------------------------------------------------------------------------1.00----------------------------------------------------------------
.................................................................................................................CATTCTCCACCCATCTT......................................................................................................................................................................................................................................................................................................................... 1711.001.00-----------------------1.00------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................CACAGCGATTCAGAACAGACAC.......................................................................................................................................................................................................................................... 2211.001.00--------------1.00---------------------------------------------------------------------------------------------------------------------------------------
..GCCCCCCGGAGCGGCCCTGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................... 2211.001.00-----------------------------------------------------------------------------------------1.00------------------------------------------------------------
...............................................................CCGGGCTATGCTCTTGGT.......................................................................................................................................................................................................................................................................................................................................................................... 181.000.00------------------------------------------------------------------------------------------------------------------1.00-----------------------------------
..................................................ATAGCCCGGGATCGGGGACCAC................................................................................................................................................................................................................................................................................................................................................................................... 2211.001.00----------------------------------------------------------------------------------------------------------------------1.00-------------------------------
.................................................................................................................................................................................................................................................................................GCCGGAGATGTCACGAACTC...................................................................................................................................................... 2011.001.00--1.00---------------------------------------------------------------------------------------------------------------------------------------------------
...CTCAGGGCCGCTCCGGGGGGCTA................................................................................................................................................................................................................................................................................................................................................................................................................................. 231.000.00-----------------------------------------------------------------------------------1.00------------------------------------------------------------------
..........................................................................................GTCCCCGCCGCCCTCCGCCTTCC.......................................................................................................................................................................................................................................................................................................................................... 2311.001.00-------------------------------------------------------------1.00----------------------------------------------------------------------------------------
.....................................GGCAGCCCCGGAGGTGGTCCCCGATAT........................................................................................................................................................................................................................................................................................................................................................................................... 271.000.00----------------------------------------------------------------------------------------1.00-------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................GCTCGGGACGCTCACATGGA................................................................... 201.000.00----------------------------------------------------------------------------------------------------------------------------1.00-------------------------
........GGCCGCTCCGGGGGGCCTCAATGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................... 251.000.00-1.00----------------------------------------------------------------------------------------------------------------------------------------------------
.......................................CAGCCCCGGAGGTGGTCCCCGATGT........................................................................................................................................................................................................................................................................................................................................................................................... 251.000.00-----------------------------------------------------------------------------------------------------1.00------------------------------------------------
.....CAGGGCCGCTCCGGGGGGTGA................................................................................................................................................................................................................................................................................................................................................................................................................................. 211.000.00---------------------------------------------------------------1.00--------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................GCCTGGTGGAAGGGACGCC.................................................................................................... 191.000.00-------------------------------------------------------------------------------1.00----------------------------------------------------------------------
..TCTCAGGGCCGCTCCGGGGGGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................. 231.000.00--------------------------------------------------------1.00---------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGCGTGTCCGC......................... 1511.001.00--------------1.00---------------------------------------------------------------------------------------------------------------------------------------
.GTCTCAGGGCCGCTCCGGGGGGT................................................................................................................................................................................................................................................................................................................................................................................................................................... 231.000.00---------------------1.00--------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................GGAGGGGCGGTGTCTG......................................................................................................................................................................................................................................................... 161.000.00----------------------1.00-------------------------------------------------------------------------------------------------------------------------------
......................................TCGGGGACCACCTCCGGGGCTGC.............................................................................................................................................................................................................................................................................................................................................................................................. 2311.001.00---------------------------------------------------------------------------------------------------------------1.00--------------------------------------
.....................................................................................................................................................................................CACAGCGATTCAGAACAGACACCGCCCC.......................................................................................................................................................................................................................................... 2811.001.00--------------------------------------------------------------------------------------------1.00---------------------------------------------------------
.......................................TCGGGGACCACCTCCGGGGCTG.............................................................................................................................................................................................................................................................................................................................................................................................. 2211.001.00---------------------------------------------------------1.00--------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................GCCTGGAATGTGAGCGTCC............................................................... 1911.001.00--1.00---------------------------------------------------------------------------------------------------------------------------------------------------
.......AGGCCCCCCGGAGCGGCCC................................................................................................................................................................................................................................................................................................................................................................................................................................. 1911.001.00-----------------------------------1.00------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................CCAGGAAGGGCAGGGCTCAGT.................................................................................................................................................................................................... 211.000.00---------------------------------------------------------------------------------------------------------------------------1.00--------------------------
....TCAGGGCCGCTCCGGGGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00----------------------------------------------------------------------------------------------------------------------------------------1.00-------------
.............................................................................................................................................................................................................................................................................................CATCGAGTCCCTCCGCGCCGGAGA...................................................................................................................................... 2411.001.00-------1.00----------------------------------------------------------------------------------------------------------------------------------------------
.....................................GATCGGGGACCACCTCCGGGGCTGCC............................................................................................................................................................................................................................................................................................................................................................................................ 2611.001.00-----------------------1.00------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................CTGGAATGTGAGCGTCCCGAGC................................................................. 2211.001.00------------------------------1.00-----------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTCTGGCGTGTCCG...................... 1711.001.00-----1.00------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................GTTGCTATGGCGACTGGGTCTG.................................................................................................................................................................................................................................................................... 221.000.00-------------------------------------------------------------------------1.00----------------------------------------------------------------------------
.......................................CAGCCCCGGAGGTGGTCCCCGATTTGT......................................................................................................................................................................................................................................................................................................................................................................................... 271.000.00-----------------------1.00------------------------------------------------------------------------------------------------------------------------------
...GCCCCCCGGAGCGGCCCTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................... 2111.001.00-----------------------------------------------------------------------------------------------------------------1.00------------------------------------
...CTCAGGGCCGCTCCGGGGGGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................. 221.000.00--------------1.00---------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................ACCCGGGCGCTGCCCCGTG................................................................................................................................................................................................................... 191.000.00---------------1.00--------------------------------------------------------------------------------------------------------------------------------------
....TCAGGGCCGCTCCGGGGGGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................. 211.000.00----------------------------------------------------------------------------------------------------------------------------------1.00-------------------
...CTCAGGGCCGCTCCGGGGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00-------------------------------------------------------------------------------------------------------------------------------------------1.00----------
..............GTTCTTGAGGCCCCCCGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................... 1911.001.00--------1.00---------------------------------------------------------------------------------------------------------------------------------------------
...CTCAGGGCCGCTCCGGGGGGTAA................................................................................................................................................................................................................................................................................................................................................................................................................................. 231.000.00-------------1.00----------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................CGCTCACATTCCAGGCACC............................................................ 191.000.00--1.00---------------------------------------------------------------------------------------------------------------------------------------------------
..TCTCAGGGCCGCTCCGGGGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................... 221.000.00--------------------------------------------------------------1.00---------------------------------------------------------------------------------------
.....CAGGGCCGCTCCGGGGGGCGA................................................................................................................................................................................................................................................................................................................................................................................................................................. 211.000.00------------------------------------------------------------------------------------------------------------------------------------------1.00-----------
....TCAGGGCCGCTCCGGGGGGTAAA................................................................................................................................................................................................................................................................................................................................................................................................................................ 231.000.00------------------------------------------------------1.00-----------------------------------------------------------------------------------------------
.....CCCCCCGGAGCGGCCCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................... 1811.001.00--------------------------------------------1.00---------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................CCCGGCCTCCTCCTCTGGC............. 1921.001.00--1.00---------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................GACAAGGGCCTGGAATGT........................................................ 1820.500.50--0.50---------------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................CTTCTCAGATCCAAGAG................................................................................................................................................................................................................................................................................................................................................................. 1720.500.50-----0.50------------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................TTGACATTCTCCACCC..................................................................................................................................................................................................................................................................................................................... 1620.500.50------------------------------------------------------------------------------------------------------------------------------------------------0.50-----
..........................................................................CTTCTCAGATCCAAGA................................................................................................................................................................................................................................................................................................................................................................. 1640.250.25--------------------------------------------------------------------0.25---------------------------------------------------------------------------------