ID: uc004dii.1_intron_3_0_chrX_47486732_r
GENE: CFP(3)
chrX:47486682-47486919-


(1)
AGO2.ip
(7)
B-CELL
(3)
BRAIN
(3)
BREAST
(7)
CELL-LINE
(2)
CERVIX
(1)
LIVER
(1)
OTHER
(8)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
AGGACAGGCACAGGAATCAGAGGCCTGTGACACCCAGCAGGTCTGCCCCAGTGAGTGAGGGAAGCCACAGGATGCTGATGGGTGCACCCAGCGTGGGTCTGCGGGGTTACAGCAGGGAACTGCCAGGCTGAGAGGACTTTAGCATGCATGACCACACCTGCATCCCTCCACCTCCCACCCCACCACAGCACACGGGGCCTGGGCCACCTGGGGCCCCTGGACCCCCTGCTCAGCCTCC
...............................................................................................................((((....))))..((.((.((((........(((((((....))..))))).......)))).)).))..........................................................
............................................................................................................109............................................................................188................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR189782SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR040035(GSM532920)
G001T. (cervix)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577743(Rovira)
total RNA. (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR189783SRR038854(GSM458537)
MM653. (cell line)
.................................................................................................................AGGGAACTGCCAGGCATC...........................................................................................................1819.000.002.002.00-4.003.002.00--1.00--2.00----------1.001.00---------1.00-----
..............................................................................................................AGCAGGGAACTGCCAGGCAT............................................................................................................20110.001.006.002.00----------1.00-------------------1.00------
...............................................................................................................GCAGGGAACTGCCAGGCAT............................................................................................................196.000.002.00-1.00-----1.00-2.00----------------------------
.................................................................................................................AGGGAACTGCCAGGCATCA..........................................................................................................193.000.00-------1.00----1.00-------1.00------------------
.................................................................................................................AGGGAACTGCCAGGCTC............................................................................................................173.000.00------2.00----------1.00---------------------
.................................................................................................................AGGGAACTGCCAGGCATAA..........................................................................................................192.000.00-1.00---1.00---------------------------------
.................................................................................................................AGGGAACTGCCAGGCATT...........................................................................................................181.000.00-----------------------------1.00---------
..............................................................................................................AGCAGGGAACTGCCAGGC..............................................................................................................1811.001.00-------------------1.00-------------------
..................................................................................................................................................................................................GGGCCTGGGCCACCTGGCC.........................191.000.00------------------------1.00--------------
......................................................................................................................................................................TCCACCTCCCACCCCATAGA....................................................201.000.00--------------------------1.00------------
...............................................................................................GGTCTGCGGGGTTACGAAC............................................................................................................................191.000.00--1.00------------------------------------
..............................................................................................................AGCAGGGAACTGCCAGGCTC............................................................................................................201.000.001.00--------------------------------------
..............................................................................................................AGCAGGGAACTGCCAGGCAC............................................................................................................2011.001.00-------1.00-------------------------------
..............................................................................................................AGCAGGGAACTGCCAGGCCT............................................................................................................2011.001.00---------------------------1.00-----------
........................................................................................................................................................................................................GGGCCACCTGGGGCCTGG....................181.000.00---------------------1.00-----------------
..................................................................ACAGGATGCTGATGGGTGC.........................................................................................................................................................1911.001.00------------------------------1.00--------
.................................................................................................................AGGGAACTGCCAGGCCC............................................................................................................171.000.00---------------1.00-----------------------
.................................................................................................................AGGGAACTGCCAGGCATA...........................................................................................................181.000.00-1.00-------------------------------------
..............................................................................................................AGCAGGGAACTGCCAGGCAATG..........................................................................................................2211.001.00--1.00------------------------------------
....CAGGCACAGGAATCAACCG.......................................................................................................................................................................................................................191.000.00--1.00------------------------------------
........................................GTCTGCCCCAGTGAGTGAG...................................................................................................................................................................................1911.001.00-------------------------1.00-------------
.................................CCAGCAGGTCTGCCCCA............................................................................................................................................................................................1720.500.50-----------------------------------0.50---
...........................................................................................................................................................ACCTGCATCCCTCCACCT.................................................................1820.500.50----------------------------------0.50----
...............................................................................................................GCAGGGAACTGCCAGG...............................................................................................................1640.250.25------------------------------------0.25--

Antisense strand
AGGACAGGCACAGGAATCAGAGGCCTGTGACACCCAGCAGGTCTGCCCCAGTGAGTGAGGGAAGCCACAGGATGCTGATGGGTGCACCCAGCGTGGGTCTGCGGGGTTACAGCAGGGAACTGCCAGGCTGAGAGGACTTTAGCATGCATGACCACACCTGCATCCCTCCACCTCCCACCCCACCACAGCACACGGGGCCTGGGCCACCTGGGGCCCCTGGACCCCCTGCTCAGCCTCC
...............................................................................................................((((....))))..((.((.((((........(((((((....))..))))).......)))).)).))..........................................................
............................................................................................................109............................................................................188................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR189782SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR040035(GSM532920)
G001T. (cervix)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577743(Rovira)
total RNA. (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR189783SRR038854(GSM458537)
MM653. (cell line)
....................................................................................................................................................................................................................GCCCCTGGACCCCCTATTT....... 191.000.00------------------1.00--------------------
.....................................................................................................................................................................CTCCACCTCCCACCCCATGGA.................................................... 211.000.00-------------1.00-------------------------
.....................................................................................................................................................................CTCCACCTCCCACCCCAT....................................................... 181.000.00----------------------------1.00----------
...........................................................................................CGTGGGTCTGCGGGGTTATA............................................................................................................................... 201.000.00-------------------------------1.00-------
................................................................CCACAGGATGCTGATTTT............................................................................................................................................................ 181.000.00----------------1.00----------------------
.....................................................................................................................................................................CTCCACCTCCCACCCCATA...................................................... 191.000.00---------1.00-----------------------------
..............................................................................................................................................................TGCATCCCTCCACCTCCTAG............................................................ 201.000.00--------------1.00------------------------
....................................................................................................................................................................CCTCCACCTCCCACCCCAATTT.................................................... 221.000.00---------1.00-----------------------------
............................................................................................................................................................................TCCCACCCCACCACAGCACA.............................................. 201.000.001.00--------------------------------------
........................................................................................................................................................................GTGGTGGGGTGGGAGGTG.................................................... 1850.200.20-------------------------------------0.20-
...................................................................................................................................................................GGGGTGGGAGGTGGAGGG......................................................... 1890.110.11--------------------------------------0.11